Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005271

Physical Location & Seq

Genomic Coordinates Forward (+)

11927314 .. 11929103

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0150100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCAGAAGTTGTGTGTTAGTCCCAACCACAGCAAAATTCGGAGTTCGTATTGGGTCATTACCGTTGGATCACTGTTTCAATTGAAACCAACGGCCCAGATTAAAGGACCGTTGGAGTCAAAATCACTTAAGAAGCCAACGATGAGGAGAGAAGTGTCCTGCCGCCCACTCAATGTCGCTACGCGACAAAATCCTGCTGCAGGTCGGCCACGTGGCGCTTCTGGATTGTGCTGGCAGCTCCATGACTTTGGGCAAGAAAAAAGTCATGGCCTTGCCCTTTTATTTGCCCTTGGTCATGCAAAGCCAACTCTTGGCTGGGGAAGCTTGGGCCGGTGGAAGCTGAAAATAGCTTTAGCTGGGCAACACATCATCATTTCTAAGTCCATGCCCGGTCAAGTGCAAACCGCTGCACTTGCTCTTATAGCAGGAATTTTGGCTTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

148

Amino Acids

16.04

Weight (kDa)

10.88

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02990
fragaria_vesca	FvH4_4g31291 FvH4_5g24800
malus_domestica	MD13G1071600.v1.1 MD16G1072300.v1.1 MD16G1072400.v1.1
prunus_persica	Prupe.1G275300_v2.0.a1
pyrus_communis	pycom13g06420 pycom16g06270
rosa_chinensis	RchiOBHm_Chr4g0439741 RchiOBHm_Chr7g0215091 RchiOBHm_Chr7g0215101
rosa_laevigata	RLG00000002691 RLG00000006240
rosa_multiflora	Rmu_sc0001239.1_g000001 Rmu_sc0010226.1_g000008 Rmu_ssc0000029.1_g000010
rosa_roxburghii	Rroxscaffold_5G00380680
rosa_rugosa	Rorug04G0321200 Rorug07G0150100
rosa_samantha	Rh4AG372200 Rh4BG384300 Rh4CG399000 Rh4DG378700 Rh7AG287100 Rh7BG278700 Rh7CG306800
rosa_wichuraiana	Rw4G031780 Rw7G024480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccII	CGCG	1 cut(s)	184
AciI	CCGC	2 cut(s)	163, 405
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	36, 429
AcvI	CACGTG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	200, 311
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	80, 85
AluBI	AGCT	5 cut(s)	238, 324, 340, 350, 356
AluI	AGCT	5 cut(s)	238, 324, 340, 350, 356
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	4 cut(s)	93, 206, 268, 328
ApeKI	GCWGC	3 cut(s)	197, 235, 407
ApoI	RAATTY	2 cut(s)	36, 429
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	94, 107, 328
AsuC2I	CCSGG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	107
BbrPI	CACGTG	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	184, 247, 394
BceAI	ACGGC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	4 cut(s)	163, 198, 236, 408
BlsI	GCNGC	4 cut(s)	164, 199, 237, 409
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	94, 107, 328
BmrFI	CCNGG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 311
Bse118I	RCCGGY	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	200, 311
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	184, 247, 394
BseYI	CCCAGC	2 cut(s)	315, 356
BsgI	GTGCAG	1 cut(s)	393
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	95, 208, 270, 330
BsiSI	CCGG	2 cut(s)	331, 390
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	200, 311
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	95, 208, 270, 330
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	2 cut(s)	163, 405
BspANI	GGCC	4 cut(s)	95, 208, 270, 330
BspFNI	CGCG	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	76
BspTI	CTTAAG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	289
Bst4CI	ACNGT	3 cut(s)	64, 75, 111
BstAFI	CTTAAG	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	378
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 413, 422
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	184, 247, 394
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	4 cut(s)	95, 208, 270, 330
BtsIMutI	CAGTG	1 cut(s)	71
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	330
Cfr13I	GGNCC	3 cut(s)	94, 107, 328
CviAII	CATG	4 cut(s)	242, 266, 296, 385
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	107
Eco72I	CACGTG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	4 cut(s)	245, 269, 299, 388
FaiI	YATR	5 cut(s)	243, 267, 297, 386, 422
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	4 cut(s)	241, 265, 295, 384
Fnu4HI	GCNGC	4 cut(s)	163, 198, 236, 408
Fsp4HI	GCNGC	4 cut(s)	163, 198, 236, 408
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	163, 198, 236, 408
GsaI	CCCAGC	2 cut(s)	319, 360
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	4 cut(s)	95, 208, 270, 330
HapII	CCGG	2 cut(s)	331, 390
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	245, 269, 299, 388
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	2 cut(s)	331, 390
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	222
HpyCH4III	ACNGT	3 cut(s)	64, 75, 111
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	4, 200, 299, 400, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 413, 422
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	245, 269, 299, 388
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	3 cut(s)	184, 247, 394
MaeII	ACGT	1 cut(s)	211
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MfeI	CAATTG	1 cut(s)	80
MluCI	AATT	4 cut(s)	36, 80, 429, 442
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	46, 93
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	4 cut(s)	102, 129, 441, 445
MspA1I	CMGCKG	1 cut(s)	407
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	2 cut(s)	331, 390
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	3 cut(s)	321, 413, 422
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	245, 269, 299, 388
PacI	TTAATTAA	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	164, 199, 237, 409
PleI	GAGTC	1 cut(s)	124
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	212
PspCI	CACGTG	1 cut(s)	212
PspFI	CCCAGC	2 cut(s)	315, 356
PspPI	GGNCC	3 cut(s)	94, 107, 328
PstI	CTGCAG	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	102, 129, 441, 445
SatI	GCNGC	4 cut(s)	163, 198, 236, 408
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	3 cut(s)	94, 107, 328
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	7 cut(s)	205, 214, 240, 326, 342, 352, 358
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	36, 80, 429, 442
SsiI	CCGC	2 cut(s)	163, 405
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	64, 75, 111
TaiI	ACGT	1 cut(s)	214
TasI	AATT	4 cut(s)	36, 80, 429, 442
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	4 cut(s)	102, 129, 441, 445
Tru9I	TTAA	4 cut(s)	102, 129, 441, 445
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	3 cut(s)	197, 235, 407
TspRI	CASTG	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	311
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	107
XagI	CCTNNNNNAGG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	36, 429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.