Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Forward (+)

7301334 .. 7303509

Gene Structure 2176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTCAAAAGAAGTGAGTGAAGAAGGAAGACATGGCAAAGACTACGTGGATCCACCTCCAGCTCCACTTCTAGACATGGCTGAGCTTAAGCTCTGGTCTTTTTACAGAGCTATCATCGCAGAGTTCATCGCCACTCTCCTCTTCCTCTATGTAACCGTAGCTACAGTCATTGGCCACAAGAACCAAACCGGTCCTTGTGGCGGTGTTGGTTTACTCGGCATTGCGTGGGCCTTTGGTGGCATGATCTTTGTCCTCGTCTATTGCACCGCCGGTATCTCCGGAGGTCACATTAACCCAGCTGTGACATTTGGTCTGTTCTTGGCTCGTAAAGTGTCGCTCCCTAGAGCAGTTGCTTACATGGTGGCTCAGTGTCTTGGAGCCATTTGTGGAGTTGGACTCGTTAAGGCCTTTATGATGACTCCATATAAACGTCTCGGAGGCGGAGCTAACACCGTAGCTGATGGTTATAGCACCGGAACTGCTCTTGGTGCTGAGATTATTGGCACATTTGTCTTGGTTTACACTGTCTTCTCCGCCACTGACCCCAAAAGAAGTGCCCGTGACTCTCACGTCCCGGTTTTGGCTCCGTTACCTATAGGGTTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATAACTGGAACTGGGATTAATCCAGCCAGAAGCTTTGGTGCTGCTGTTATCTACAACAATGAGAAAGCTTGGGACGACCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCATTAGCAGCAGCAGCATACCATCAATATATCTTGAGAGCTGCAGCAATCAAAGCTTTGGCTTCATTCCGCAGCAACCCAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1624 MIP

Protein Analysis

278

Amino Acids

29.5

Weight (kDa)

9.02

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	28 - 257	7.7e-84	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	5 cut(s)	201, 267, 441, 534, 817
AclWI	GGATC	3 cut(s)	44, 57, 728
AcoI	YGGCCR	1 cut(s)	172
AfiI	CCNNNNNNNGG	4 cut(s)	200, 580, 641, 743
AflII	CTTAAG	1 cut(s)	86
AgeI	ACCGGT	1 cut(s)	188
AhdI	GACNNNNNGTC	1 cut(s)	309
AjiI	CACGTC	1 cut(s)	571
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	3 cut(s)	44, 57, 728
Aor13HI	TCCGGA	1 cut(s)	278
AoxI	GGCC	3 cut(s)	172, 228, 405
ApeKI	GCWGC	7 cut(s)	677, 755, 758, 761, 788, 791, 819
AseI	ATTAAT	1 cut(s)	654
AsiGI	ACCGGT	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	191, 228, 734
AsuC2I	CCSGG	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	191, 734
BaeGI	GKGCMC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	34, 520
BbvI	GCAGC	7 cut(s)	664, 767, 770, 773, 775, 803, 831
BccI	CCATC	2 cut(s)	455, 777
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	2 cut(s)	71, 342
BfmI	CTRYAG	3 cut(s)	162, 594, 789
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	7 cut(s)	678, 756, 759, 762, 789, 792, 820
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	7 cut(s)	679, 757, 760, 763, 790, 793, 821
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	2 cut(s)	191, 734
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	3 cut(s)	191, 228, 734
BmiI	GGNNCC	3 cut(s)	51, 379, 585
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	657
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	2 cut(s)	34, 520
BplI	GAGNNNNNCTC	2 cut(s)	381, 413
BpmI	CTGGAG	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	46
BsaWI	WCCGGW	3 cut(s)	188, 278, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 580, 641, 743
Bse118I	RCCGGY	2 cut(s)	188, 269
Bse1I	ACTGG	2 cut(s)	646, 652
Bse3DI	GCAATG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	278
BseLI	CCNNNNNNNGG	4 cut(s)	200, 580, 641, 743
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	3 cut(s)	72, 380, 483
BseNI	ACTGG	2 cut(s)	646, 652
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	7 cut(s)	664, 767, 770, 773, 775, 803, 831
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	3 cut(s)	174, 230, 407
BshTI	ACCGGT	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	189, 270, 279, 474, 575
BslFI	GGGAC	2 cut(s)	557, 722
BslI	CCNNNNNNNGG	4 cut(s)	200, 580, 641, 743
BsmAI	GTCTC	1 cut(s)	437
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	557, 722
BsnI	GGCC	3 cut(s)	174, 230, 407
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	49, 243, 720
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	5 cut(s)	201, 267, 441, 534, 817
BspANI	GGCC	3 cut(s)	174, 230, 407
BspCNI	CTCAG	3 cut(s)	73, 379, 484
BspEI	TCCGGA	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	51, 379, 585
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	3 cut(s)	44, 57, 728
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	188, 269
BsrI	ACTGG	2 cut(s)	646, 652
BssAI	RCCGGY	2 cut(s)	188, 269
BssMI	GATC	3 cut(s)	49, 243, 720
Bst4CI	ACNGT	4 cut(s)	157, 166, 454, 526
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	46
BstDEI	CTNAG	3 cut(s)	81, 366, 492
BstKTI	GATC	3 cut(s)	52, 246, 723
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	3 cut(s)	49, 243, 720
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 488, 755, 761, 800
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	3 cut(s)	162, 594, 789
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	7 cut(s)	664, 767, 770, 773, 775, 803, 831
BstV2I	GAAGAC	2 cut(s)	34, 520
BstX2I	RGATCY	2 cut(s)	49, 720
BstYI	RGATCY	2 cut(s)	49, 720
BsuRI	GGCC	3 cut(s)	174, 230, 407
BtgZI	GCGATG	2 cut(s)	100, 112
BtrI	CACGTC	1 cut(s)	571
BtsIMutI	CAGTG	3 cut(s)	374, 522, 537
Cfr10I	RCCGGY	2 cut(s)	188, 269
Cfr13I	GGNCC	3 cut(s)	191, 228, 734
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	5 cut(s)	32, 76, 241, 358, 613
DdeI	CTNAG	3 cut(s)	81, 366, 492
DpnI	GATC	3 cut(s)	51, 245, 722
DpnII	GATC	3 cut(s)	49, 243, 720
DrdI	GACNNNNNNGTC	1 cut(s)	569
DriI	GACNNNNNGTC	1 cut(s)	309
DseDI	GACNNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	2 cut(s)	456, 523
Eco147I	AGGCCT	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	191, 734
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	5 cut(s)	35, 79, 244, 361, 616
FaqI	GGGAC	2 cut(s)	557, 722
FatI	CATG	5 cut(s)	31, 75, 240, 357, 612
Fnu4HI	GCNGC	7 cut(s)	678, 756, 759, 762, 789, 792, 820
Fsp4HI	GCNGC	7 cut(s)	678, 756, 759, 762, 789, 792, 820
FspBI	CTAG	2 cut(s)	71, 342
GluI	GCNGC	7 cut(s)	678, 756, 759, 762, 789, 792, 820
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	174, 230, 407
HapII	CCGG	5 cut(s)	189, 270, 279, 474, 575
Hin1II	CATG	5 cut(s)	35, 79, 244, 361, 616
HindIII	AAGCTT	3 cut(s)	667, 702, 801
HinfI	GANTC	3 cut(s)	396, 418, 563
HpaII	CCGG	5 cut(s)	189, 270, 279, 474, 575
Hpy166II	GTNNAC	2 cut(s)	212, 520
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	3 cut(s)	71, 279, 781
Hpy8I	GTNNAC	2 cut(s)	212, 520
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	4 cut(s)	157, 166, 454, 526
HpyCH4IV	ACGT	3 cut(s)	45, 430, 570
HpyCH4V	TGCA	3 cut(s)	264, 619, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 488, 755, 761, 800
HpyF3I	CTNAG	3 cut(s)	81, 366, 492
HpySE526I	ACGT	3 cut(s)	45, 430, 570
Hsp92II	CATG	5 cut(s)	35, 79, 244, 361, 616
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	49, 243, 720
LmnI	GCTCC	6 cut(s)	67, 342, 377, 443, 589, 746
Lsp1109I	GCAGC	7 cut(s)	664, 767, 770, 773, 775, 803, 831
MaeI	CTAG	2 cut(s)	71, 342
MaeII	ACGT	3 cut(s)	45, 430, 570
MaeIII	GTNAC	5 cut(s)	151, 284, 301, 560, 588
MalI	GATC	3 cut(s)	51, 245, 722
MboI	GATC	3 cut(s)	49, 243, 720
MboII	GAAGA	4 cut(s)	32, 39, 133, 520
MfeI	CAATTG	1 cut(s)	832
MflI	RGATCY	2 cut(s)	49, 720
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	1 cut(s)	832
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	3 cut(s)	390, 412, 557
MmeI	TCCRAC	2 cut(s)	373, 712
MnlI	CCTC	6 cut(s)	66, 149, 155, 263, 275, 431
Mox20I	TGGCCA	1 cut(s)	174
MroI	TCCGGA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	4 cut(s)	87, 291, 402, 654
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	5 cut(s)	189, 270, 279, 474, 575
MspR9I	CCNGG	1 cut(s)	575
MunI	CAATTG	1 cut(s)	832
MwoI	GCNNNNNNNGC	5 cut(s)	116, 488, 755, 761, 800
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	3 cut(s)	49, 243, 720
NlaIII	CATG	5 cut(s)	35, 79, 244, 361, 616
NlaIV	GGNNCC	3 cut(s)	51, 379, 585
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	3 cut(s)	284, 301, 560
PceI	AGGCCT	1 cut(s)	407
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	7 cut(s)	679, 757, 760, 763, 790, 793, 821
PleI	GAGTC	3 cut(s)	390, 412, 557
PpsI	GAGTC	3 cut(s)	390, 412, 557
Ppu21I	YACGTR	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	654
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	51, 379, 585
PspPI	GGNCC	3 cut(s)	191, 228, 734
PstI	CTGCAG	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	49, 720
PvuII	CAGCTG	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	87, 291, 402, 654
SatI	GCNGC	7 cut(s)	678, 756, 759, 762, 789, 792, 820
Sau3AI	GATC	3 cut(s)	49, 243, 720
Sau96I	GGNCC	3 cut(s)	191, 228, 734
SchI	GAGTC	3 cut(s)	390, 412, 557
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	559
SfcI	CTRYAG	3 cut(s)	162, 594, 789
SinI	GGWCC	2 cut(s)	191, 734
SmlI	CTYRAG	2 cut(s)	86, 781
SmoI	CTYRAG	2 cut(s)	86, 781
Sse9I	AATT	1 cut(s)	832
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	5 cut(s)	201, 267, 441, 534, 817
SspMI	CTAG	2 cut(s)	71, 342
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	4 cut(s)	157, 166, 454, 526
TaiI	ACGT	3 cut(s)	48, 433, 573
TasI	AATT	1 cut(s)	832
Tru1I	TTAA	4 cut(s)	87, 291, 402, 654
Tru9I	TTAA	4 cut(s)	87, 291, 402, 654
TscAI	CASTG	3 cut(s)	374, 529, 544
TseFI	GTSAC	3 cut(s)	284, 301, 560
TseI	GCWGC	7 cut(s)	677, 755, 758, 761, 788, 791, 819
Tsp45I	GTSAC	3 cut(s)	284, 301, 560
TspDTI	ATGAA	3 cut(s)	115, 601, 801
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	3 cut(s)	374, 529, 544
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	191, 734
VspI	ATTAAT	1 cut(s)	654
XbaI	TCTAGA	1 cut(s)	70
XspI	CTAG	2 cut(s)	71, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.