Rh2AG121900

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003977
Physical Location & Seq
Reverse (-)
11038797 .. 11039460
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG121900.1

Sequence Viewer

Length: 603 bp
ATGTTGAAGGAAGTGAGTGAAGAAGGTTTAAAGGTTCACGAAGAGCAGCAGCGTGAGAAGGACTATGTAGCGCCACCACAGGTTCCTCTCTTGGAGCTGGGAGAGCTTCAACGATGGTCGTTTTACAGAGCCGTGATAGCGGAGTTTGTCGCCACTCTTCTCTTCCAATATGTCACGGTTGCCACCATCATCGGACACAAGAAGGAAGCTGCTCAGTGTGACGGCGTTGGTGTTCTTGGCATTAATTGCCTGGGCCTTCGGTGGCATGATCTTCATCCTGGTTTACTCCATCGCTGGAATCTCAGATATTTGATAAGAGAACATTATTCTAGTATACGCGGCCACATCAACCCTGCGGTGACTTTCGGGCTGTTGGTTGCGAGGAGGGTGTCACTGCTCCGAACAGTGGCTTACATTGTTGCACAATGCTTAGGAGGCATATGCGGCGTAGGGTTAGTGAAAGCTTTGATGAAGCATTACTACCTCACGCATGGAGGTGGTGCCAACTCGGTTGCTCCTGATTATTCCAAAGGCGCTGCTTTGGGAGCTGAAATAGTTGGCACTTTTCTTCTGGTCTACAGTCTTCTCTGGAACAGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

200

Amino Acids

22.25

Weight (kDa)

8.8

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 35 - 195 8.1e-32 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccI GTMKAC 2 cut(s) 334, 576
AccII CGCG 1 cut(s) 339
AciI CCGC 4 cut(s) 140, 339, 356, 444
AcoI YGGCCR 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 2 cut(s) 7, 110
AjnI CCWGG 2 cut(s) 249, 277
AluBI AGCT 5 cut(s) 97, 106, 209, 464, 548
AluI AGCT 5 cut(s) 97, 106, 209, 464, 548
AoxI GGCC 2 cut(s) 253, 340
ApeKI GCWGC 4 cut(s) 46, 49, 209, 536
AseI ATTAAT 1 cut(s) 243
AspLEI GCGC 2 cut(s) 73, 536
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 370
BanI GGYRCC 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BbsI GAAGAC 1 cut(s) 575
BbvI GCAGC 4 cut(s) 58, 61, 196, 523
BccI CCATC 3 cut(s) 108, 194, 297
BceAI ACGGC 2 cut(s) 116, 238
BciT130I CCWGG 2 cut(s) 251, 279
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 577
BfoI RGCGCY 2 cut(s) 74, 537
BisI GCNGC 6 cut(s) 47, 50, 210, 340, 445, 537
BlsI GCNGC 6 cut(s) 48, 51, 211, 341, 446, 538
Bme1390I CCNGG 2 cut(s) 251, 279
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 84, 502
BmrFI CCNGG 2 cut(s) 251, 279
BmsI GCATC 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 575
Bpu10I CCTNAGC 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 251, 279
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 227, 316
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 4 cut(s) 58, 61, 196, 523
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 2 cut(s) 255, 342
BshNI GGYRCC 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 406
BsnI GGCC 2 cut(s) 255, 342
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 4 cut(s) 140, 339, 356, 444
BspANI GGCC 2 cut(s) 255, 342
BspCNI CTCAG 2 cut(s) 226, 315
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 84, 502
BspQI GCTCTTC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 268
BssNAI GTATAC 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 251, 279
Bst4CI ACNGT 3 cut(s) 178, 406, 581
Bst6I CTCTTC 3 cut(s) 36, 162, 167
BstAPI GCANNNNNTGC 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 213, 302, 430
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 1 cut(s) 339
BstH2I RGCGCY 2 cut(s) 74, 537
BstHHI GCGC 2 cut(s) 73, 536
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 6 cut(s) 103, 137, 246, 435, 444, 545
BstNI CCWGG 2 cut(s) 251, 279
BstSCI CCNGG 2 cut(s) 249, 277
BstSFI CTRYAG 1 cut(s) 577
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 4 cut(s) 58, 61, 196, 523
BstV2I GAAGAC 1 cut(s) 575
BstZ17I GTATAC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 255, 342
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 3 cut(s) 221, 392, 411
CfoI GCGC 2 cut(s) 73, 536
Cfr13I GGNCC 1 cut(s) 253
CviAII CATG 2 cut(s) 266, 491
DdeI CTNAG 3 cut(s) 213, 302, 430
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DraI TTTAAA 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 3 cut(s) 36, 162, 167
EarI CTCTTC 3 cut(s) 36, 162, 167
EcoRII CCWGG 2 cut(s) 249, 277
FaeI CATG 2 cut(s) 269, 494
FaiI YATR 7 cut(s) 66, 171, 267, 335, 440, 442, 492
FatI CATG 2 cut(s) 265, 490
FauNDI CATATG 1 cut(s) 440
FblI GTMKAC 2 cut(s) 334, 576
Fnu4HI GCNGC 6 cut(s) 47, 50, 210, 340, 445, 537
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 6 cut(s) 47, 50, 210, 340, 445, 537
FspBI CTAG 1 cut(s) 330
GlaI GCGC 2 cut(s) 72, 535
GluI GCNGC 6 cut(s) 47, 50, 210, 340, 445, 537
GsaI CCCAGC 1 cut(s) 101
HaeII RGCGCY 2 cut(s) 74, 537
HaeIII GGCC 2 cut(s) 255, 342
HhaI GCGC 2 cut(s) 73, 536
Hin1II CATG 2 cut(s) 269, 494
Hin6I GCGC 2 cut(s) 71, 534
HinP1I GCGC 2 cut(s) 71, 534
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 1 cut(s) 298
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 4 cut(s) 37, 284, 335, 577
Hpy188I TCNGA 3 cut(s) 194, 305, 401
Hpy188III TCNNGA 3 cut(s) 38, 518, 589
Hpy8I GTNNAC 4 cut(s) 37, 284, 335, 577
HpyAV CCTTC 4 cut(s) 17, 52, 196, 266
HpyCH4III ACNGT 3 cut(s) 178, 406, 581
HpyCH4V TGCA 1 cut(s) 422
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 137, 246, 435, 444, 545
HpyF3I CTNAG 3 cut(s) 213, 302, 430
Hsp92II CATG 2 cut(s) 269, 494
HspAI GCGC 2 cut(s) 71, 534
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 4 cut(s) 94, 402, 520, 545
Lsp1109I GCAGC 4 cut(s) 58, 61, 196, 523
LweI GCATC 1 cut(s) 587
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 4 cut(s) 172, 218, 358, 390
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 7 cut(s) 32, 53, 149, 154, 263, 560, 575
MluCI AATT 1 cut(s) 244
MnlI CCTC 6 cut(s) 96, 375, 378, 428, 488, 494
MseI TTAA 2 cut(s) 29, 243
MslI CAYNNNNRTG 1 cut(s) 495
MspR9I CCNGG 2 cut(s) 251, 279
MvaI CCWGG 2 cut(s) 251, 279
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 6 cut(s) 103, 137, 246, 435, 444, 545
NdeI CATATG 1 cut(s) 440
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 269, 494
NlaIV GGNNCC 2 cut(s) 84, 502
NmuCI GTSAC 4 cut(s) 172, 218, 358, 390
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 6 cut(s) 48, 51, 211, 341, 446, 538
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 249, 277
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 2 cut(s) 249, 277
PspN4I GGNNCC 2 cut(s) 84, 502
PspPI GGNCC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 495
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 29, 243
SatI GCNGC 6 cut(s) 47, 50, 210, 340, 445, 537
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 2 cut(s) 251, 279
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 577
SmiMI CAYNNNNRTG 1 cut(s) 495
Sse9I AATT 1 cut(s) 244
SsiI CCGC 4 cut(s) 140, 339, 356, 444
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 249, 277
TaaI ACNGT 3 cut(s) 178, 406, 581
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 342, 447
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 29, 243
Tru9I TTAA 2 cut(s) 29, 243
TscAI CASTG 3 cut(s) 221, 399, 411
TseFI GTSAC 4 cut(s) 172, 218, 358, 390
TseI GCWGC 4 cut(s) 46, 49, 209, 536
Tsp45I GTSAC 4 cut(s) 172, 218, 358, 390
TspDTI ATGAA 2 cut(s) 263, 485
TspRI CASTG 3 cut(s) 221, 399, 411
VspI ATTAAT 1 cut(s) 243
XmiI GTMKAC 2 cut(s) 334, 576
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.