Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Reverse (-)

6628151 .. 6629658

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCGAAAGAAGAAGTGACTGAAGAAGGAGAGGTGTTCTCTCATGGTCAGCAACCTAGAGACTACAGCGAACCGGCACCGGCACCGCTCTTTGATGCCGGAGATCTCAGCCTCTGGTCCTTTTACAGAGCCGTGATTGCCGAGTTCATCGCCAGCCTTCTGTTTTTGTACATCACAGTCGCTACAGTAATAGGGTATCAAAAAGAATCGAACCCATGCGACACTATTGGAGTCTTGGGGATTGCATGGTCTTTCGGAGGCATGATTTTCATCCTTGTATATTCCACTGCTGGAATTTCGGGTGGTCACATAAATCCGGCGGTGACGTTCGGATTGTTCTTGGCAAGGAAGGTTTCGTTGGTAAGGGCAGTGGCATACATAGTGGCACAGTGCTTGGGAGCAATATGTGGAGTTGGATTGGTAAAGGGAGTGATGAAGCATTACTATGAAAGCTCACCAGGTGGAGGTGCCAATACTGTGGCTGCTGGCTACTCTAATGGAACCGCTTTGGGAGCTGAGATTATCGGAACTTTTGTGCTGGTCTACACCATCTTCTCTGCCACCGATCCTAAGAGAAACGCACGAGATTCTCACGTACCTGTTTTGGCCCCGTTGCCGATTGGGTTTGCGGTGTTTGTGGTGCACTTGGCCACGATTCCCATCACAGGGACCGGGATCAACCCTGCTCGGAGCTTGGGAGCAGCCGTCATCTTCGACAACCATAAAGTTTGGGATGATCAGTGGATATTCTGGGTTGGGCCCCTTGTTGGGGCACTGGCTGCCGCAATTTACCATGAGCACATATTGAGAGCCGCCGCCATAAAGGCTTTGGGATCTTTCACATCCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

283

Amino Acids

30.02

Weight (kDa)

6.22

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	37 - 265	4.3e-81	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	76, 82, 467
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	8 cut(s)	86, 320, 504, 629, 783, 813, 816, 847
AclWI	GGATC	3 cut(s)	560, 683, 841
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	170, 597
AfiI	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 767, 768, 769
AjnI	CCWGG	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	3 cut(s)	453, 515, 693
AluI	AGCT	3 cut(s)	453, 515, 693
Alw21I	GWGCWC	2 cut(s)	645, 801
Alw26I	GTCTC	1 cut(s)	54
Alw44I	GTGCAC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	560, 683, 841
AlwNI	CAGNNNCTG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	606, 648, 758
ApaI	GGGCCC	1 cut(s)	762
ApaLI	GTGCAC	1 cut(s)	641
ApeKI	GCWGC	3 cut(s)	482, 701, 779
ApoI	RAATTY	1 cut(s)	294
AspS9I	GGNCC	5 cut(s)	117, 607, 669, 758, 759
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	334, 447
AvaII	GGWCC	2 cut(s)	117, 669
BaeGI	GKGCMC	3 cut(s)	645, 762, 775
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	3 cut(s)	76, 82, 467
BanII	GRGCYC	1 cut(s)	762
BauI	CACGAG	1 cut(s)	582
Bbv12I	GWGCWC	2 cut(s)	645, 801
BbvI	GCAGC	3 cut(s)	469, 713, 766
BccI	CCATC	2 cut(s)	557, 668
BceAI	ACGGC	2 cut(s)	116, 689
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	2 cut(s)	64, 183
BglI	GCCNNNNNGGC	1 cut(s)	824
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	6 cut(s)	483, 702, 780, 783, 813, 816
BlsI	GCNGC	6 cut(s)	484, 703, 781, 784, 814, 817
Bme1390I	CCNGG	2 cut(s)	459, 673
Bme18I	GGWCC	2 cut(s)	117, 669
BmgT120I	GGNCC	5 cut(s)	117, 607, 669, 758, 759
BmiI	GGNNCC	8 cut(s)	78, 84, 469, 502, 609, 670, 760, 761
BmrFI	CCNGG	2 cut(s)	459, 673
BmsI	GCATC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpuMI	CCSGG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	595
BsaBI	GATNNNNATC	2 cut(s)	269, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 767, 768, 769
Bse118I	RCCGGY	2 cut(s)	73, 79
Bse1I	ACTGG	1 cut(s)	780
Bse8I	GATNNNNATC	2 cut(s)	269, 659
BseBI	CCWGG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	270, 739, 842
BseJI	GATNNNNATC	2 cut(s)	269, 659
BseLI	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 767, 768, 769
BseMII	CTCAG	2 cut(s)	121, 507
BseNI	ACTGG	1 cut(s)	780
BseSI	GKGCMC	3 cut(s)	645, 762, 775
BseXI	GCAGC	3 cut(s)	469, 713, 766
BshFI	GGCC	3 cut(s)	608, 650, 760
BshNI	GGYRCC	3 cut(s)	76, 82, 467
BsiHKAI	GWGCWC	2 cut(s)	645, 801
BsiSI	CCGG	5 cut(s)	74, 80, 99, 317, 672
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 767, 768, 769
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	3 cut(s)	608, 650, 760
Bsp120I	GGGCCC	1 cut(s)	758
Bsp1286I	GDGCHC	4 cut(s)	645, 762, 775, 801
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	103, 565, 675, 736, 833
BspACI	CCGC	8 cut(s)	86, 320, 504, 629, 783, 813, 816, 847
BspANI	GGCC	3 cut(s)	608, 650, 760
BspCNI	CTCAG	2 cut(s)	120, 508
BspLI	GGNNCC	8 cut(s)	78, 84, 469, 502, 609, 670, 760, 761
BspPI	GGATC	3 cut(s)	560, 683, 841
BspT107I	GGYRCC	3 cut(s)	76, 82, 467
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	2 cut(s)	73, 79
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	780
BssAI	RCCGGY	2 cut(s)	73, 79
BssMI	GATC	5 cut(s)	103, 565, 675, 736, 833
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	4 cut(s)	178, 187, 390, 478
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	595
BstC8I	GCNNGC	2 cut(s)	154, 487
BstDEI	CTNAG	3 cut(s)	107, 516, 570
BstF5I	GGATG	3 cut(s)	270, 739, 842
BstKTI	GATC	5 cut(s)	106, 568, 678, 739, 836
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	5 cut(s)	103, 565, 675, 736, 833
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 512, 779, 824
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	457, 671
BstSFI	CTRYAG	2 cut(s)	64, 183
BstSLI	GKGCMC	3 cut(s)	645, 762, 775
BstV1I	GCAGC	3 cut(s)	469, 713, 766
BstX2I	RGATCY	2 cut(s)	103, 833
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	2 cut(s)	103, 833
BsuRI	GGCC	3 cut(s)	608, 650, 760
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	270, 739, 842
BtsI	GCAGTG	2 cut(s)	285, 375
BtsIMutI	CAGTG	5 cut(s)	285, 375, 395, 746, 773
Cac8I	GCNNGC	2 cut(s)	154, 487
CaiI	CAGNNNCTG	1 cut(s)	114
Cfr10I	RCCGGY	2 cut(s)	73, 79
Cfr13I	GGNCC	5 cut(s)	117, 607, 669, 758, 759
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	169, 596
CviAII	CATG	5 cut(s)	44, 216, 246, 262, 794
CviQI	GTAC	2 cut(s)	169, 596
DdeI	CTNAG	3 cut(s)	107, 516, 570
DpnI	GATC	5 cut(s)	105, 567, 677, 738, 835
DpnII	GATC	5 cut(s)	103, 565, 675, 736, 833
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	117, 669
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	762
FaeI	CATG	5 cut(s)	47, 219, 249, 265, 797
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	5 cut(s)	43, 215, 245, 261, 793
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	6 cut(s)	483, 702, 780, 783, 813, 816
FokI	GGATG	3 cut(s)	257, 746, 829
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	6 cut(s)	483, 702, 780, 783, 813, 816
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	6 cut(s)	483, 702, 780, 783, 813, 816
HaeIII	GGCC	3 cut(s)	608, 650, 760
HapII	CCGG	5 cut(s)	74, 80, 99, 317, 672
Hin1II	CATG	5 cut(s)	47, 219, 249, 265, 797
HinfI	GANTC	4 cut(s)	206, 231, 587, 655
HpaII	CCGG	5 cut(s)	74, 80, 99, 317, 672
HphI	GGTGA	2 cut(s)	334, 447
Hpy166II	GTNNAC	2 cut(s)	544, 643
Hpy188I	TCNGA	4 cut(s)	257, 332, 527, 690
Hpy8I	GTNNAC	2 cut(s)	544, 643
HpyAV	CCTTC	3 cut(s)	20, 167, 343
HpyCH4III	ACNGT	4 cut(s)	178, 187, 390, 478
HpyCH4IV	ACGT	2 cut(s)	326, 594
HpyCH4V	TGCA	2 cut(s)	245, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 512, 779, 824
HpyF3I	CTNAG	3 cut(s)	107, 516, 570
HpySE526I	ACGT	2 cut(s)	326, 594
Hsp92II	CATG	5 cut(s)	47, 219, 249, 265, 797
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	103, 565, 675, 736, 833
LmnI	GCTCC	4 cut(s)	398, 512, 690, 698
Lsp1109I	GCAGC	3 cut(s)	469, 713, 766
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	326, 594
MaeIII	GTNAC	3 cut(s)	16, 305, 322
MalI	GATC	5 cut(s)	105, 567, 677, 738, 835
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	5 cut(s)	103, 565, 675, 736, 833
MboII	GAAGA	4 cut(s)	23, 35, 544, 703
MflI	RGATCY	2 cut(s)	103, 833
MhlI	GDGCHC	4 cut(s)	645, 762, 775, 801
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	2 cut(s)	294, 786
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	25, 122, 251, 458
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	849
MspI	CCGG	5 cut(s)	74, 80, 99, 317, 672
MspR9I	CCNGG	2 cut(s)	459, 673
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	137, 512, 779, 824
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	5 cut(s)	103, 565, 675, 736, 833
NlaIII	CATG	5 cut(s)	47, 219, 249, 265, 797
NlaIV	GGNNCC	8 cut(s)	78, 84, 469, 502, 609, 670, 760, 761
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	16, 305, 322
PfeI	GAWTC	3 cut(s)	206, 587, 655
PkrI	GCNGC	6 cut(s)	484, 703, 781, 784, 814, 817
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	8 cut(s)	78, 84, 469, 502, 609, 670, 760, 761
PspOMI	GGGCCC	1 cut(s)	758
PspPI	GGNCC	5 cut(s)	117, 607, 669, 758, 759
PstNI	CAGNNNCTG	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	103, 833
RsaI	GTAC	2 cut(s)	170, 597
RsaNI	GTAC	2 cut(s)	169, 596
RseI	CAYNNNNRTG	1 cut(s)	444
SatI	GCNGC	6 cut(s)	483, 702, 780, 783, 813, 816
Sau3AI	GATC	5 cut(s)	103, 565, 675, 736, 833
Sau96I	GGNCC	5 cut(s)	117, 607, 669, 758, 759
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	459, 673
SduI	GDGCHC	4 cut(s)	645, 762, 775, 801
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	2 cut(s)	64, 183
SinI	GGWCC	2 cut(s)	117, 669
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	294, 786
SsiI	CCGC	8 cut(s)	86, 320, 504, 629, 783, 813, 816, 847
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	457, 671
TaaI	ACNGT	4 cut(s)	178, 187, 390, 478
TaiI	ACGT	2 cut(s)	329, 597
TaqI	TCGA	3 cut(s)	5, 209, 714
TasI	AATT	2 cut(s)	294, 786
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	785, 815, 818
TfiI	GAWTC	3 cut(s)	206, 587, 655
TscAI	CASTG	5 cut(s)	292, 375, 395, 746, 780
TseFI	GTSAC	3 cut(s)	16, 305, 322
TseI	GCWGC	3 cut(s)	482, 701, 779
Tsp45I	GTSAC	3 cut(s)	16, 305, 322
TspDTI	ATGAA	4 cut(s)	136, 259, 449, 462
TspRI	CASTG	5 cut(s)	292, 375, 395, 746, 780
VneI	GTGCAC	1 cut(s)	641
VpaK11BI	GGWCC	2 cut(s)	117, 669
XapI	RAATTY	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.