Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Forward (+)

16708361 .. 16710407

Gene Structure 2047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCGAAAGAAGTGAGCGAAGAAGGCAAAACCCACCATGGAAAAGACTACGTGGATCCTCCACCAGCTCCTCTTCTCGACATGGGTGAGCTCAAATCCTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATCGCTACACTCCTCTTCCTCTACGTCACCGTCGCTACTGTCATCGGCCACAAGAAGCAAACCGGTCCTTGTGACGGCGTTGGTTTACTTGGTATCGCTTGGGCTTTCGGTGGTATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCTGTGACTTTCGGTCTGTTCTTGGCCCGTAAGGTCTCTTTGGTGCGAGCTCTTGGTTACATGATAGCTCAGTGTCTTGGAGCCATTTGTGGTGTGGGTTTCGTGAAAGCTTTCATGAAAACTCCTTACAACACTCTTGGTGGAGGAGCTAACACCGTAGCTGACGGTTACAGCAAAGGAACTGCTCTCGGAGCTGAGATTATTGGAACTTTCGTCCTTGTTTACACCGTTTTCTCTGCAACTGACCCTAAGAGAAGCGCTCGTGACTCTCACATCCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCATGGTGCATTTGGCTACTATCCCCATTACTGGAACTGGTATCAACCCAGCTAGAAGCTTTGGTGCTGCTGTTATCTACAACAACGAGAAGGCGTGGGATGACCAATGGATCTTTTGGGTTGGTCCGTTCTTGGGAGCACTAGCTGCAGCAGCTTACCACCAATACATATTGAGAGCTTCAGCAATTAAGGCCTTGGGCTCGTTCCGAAGCAACGCAACCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

280

Amino Acids

29.74

Weight (kDa)

8.97

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	30 - 259	2e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	3 cut(s)	50, 63, 734
AcoI	YGGCCR	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	780
AfeI	AGCGCT	1 cut(s)	562
AfiI	CCNNNNNNNGG	4 cut(s)	206, 586, 647, 749
AgeI	ACCGGT	1 cut(s)	194
AhdI	GACNNNNNGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	98
Alw21I	GWGCWC	4 cut(s)	93, 118, 355, 757
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	3 cut(s)	50, 63, 734
Aor51HI	AGCGCT	1 cut(s)	562
AoxI	GGCC	3 cut(s)	178, 327, 807
ApeKI	GCWGC	4 cut(s)	683, 761, 764, 767
AsiGI	ACCGGT	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	3 cut(s)	197, 328, 740
AsuHPI	GGTGA	2 cut(s)	98, 151
AvaII	GGWCC	2 cut(s)	197, 740
BamHI	GGATCC	1 cut(s)	55
BanII	GRGCYC	4 cut(s)	93, 118, 355, 818
BauI	CACGAG	1 cut(s)	564
Bbv12I	GWGCWC	4 cut(s)	93, 118, 355, 757
BbvI	GCAGC	4 cut(s)	670, 748, 776, 779
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	2 cut(s)	669, 758
BfmI	CTRYAG	2 cut(s)	109, 762
BfoI	RGCGCY	1 cut(s)	564
BisI	GCNGC	4 cut(s)	684, 762, 765, 768
BlsI	GCNGC	4 cut(s)	685, 763, 766, 769
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	197, 740
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	197, 328, 740
BmiI	GGNNCC	3 cut(s)	57, 385, 591
BmrFI	CCNGG	1 cut(s)	100
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
BsaAI	YACGTR	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	37, 810
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 586, 647, 749
Bse118I	RCCGGY	2 cut(s)	194, 275
Bse1I	ACTGG	2 cut(s)	652, 658
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	37, 810
BseGI	GGATG	2 cut(s)	576, 721
BseLI	CCNNNNNNNGG	4 cut(s)	206, 586, 647, 749
BseMII	CTCAG	3 cut(s)	117, 386, 489
BseNI	ACTGG	2 cut(s)	652, 658
BseRI	GAGGAG	3 cut(s)	60, 134, 462
BseXI	GCAGC	4 cut(s)	670, 748, 776, 779
BseYI	CCCAGC	2 cut(s)	301, 664
BsgI	GTGCAG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	180, 329, 809
BshTI	ACCGGT	1 cut(s)	194
BsiHKAI	GWGCWC	4 cut(s)	93, 118, 355, 757
BsiSI	CCGG	2 cut(s)	195, 276
BslI	CCNNNNNNNGG	4 cut(s)	206, 586, 647, 749
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	180, 329, 809
Bso31I	GGTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	5 cut(s)	93, 118, 355, 757, 818
Bsp143I	GATC	3 cut(s)	55, 249, 726
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	3 cut(s)	180, 329, 809
BspCNI	CTCAG	3 cut(s)	118, 385, 490
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	57, 385, 591
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	3 cut(s)	50, 63, 734
BspTNI	GGTCTC	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	194, 275
BsrI	ACTGG	2 cut(s)	652, 658
BssAI	RCCGGY	2 cut(s)	194, 275
BssECI	CCNNGG	2 cut(s)	37, 810
BssMI	GATC	3 cut(s)	55, 249, 726
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	37, 810
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	5 cut(s)	163, 172, 460, 470, 532
Bst6I	CTCTTC	2 cut(s)	78, 152
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	4 cut(s)	126, 372, 498, 552
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	576, 721
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	3 cut(s)	58, 252, 729
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	55, 249, 726
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 122, 494, 761, 767, 806
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	2 cut(s)	109, 762
BstV1I	GCAGC	4 cut(s)	670, 748, 776, 779
BstX2I	RGATCY	2 cut(s)	55, 726
BstYI	RGATCY	2 cut(s)	55, 726
BsuRI	GGCC	3 cut(s)	180, 329, 809
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	2 cut(s)	106, 118
BtsCI	GGATG	2 cut(s)	576, 721
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	2 cut(s)	194, 275
Cfr13I	GGNCC	3 cut(s)	197, 328, 740
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	5 cut(s)	38, 82, 364, 418, 619
DdeI	CTNAG	4 cut(s)	126, 372, 498, 552
DpnI	GATC	3 cut(s)	57, 251, 728
DpnII	GATC	3 cut(s)	55, 249, 726
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	78, 152
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EarI	CTCTTC	2 cut(s)	78, 152
Ecl136II	GAGCTC	3 cut(s)	91, 116, 353
Eco130I	CCWWGG	2 cut(s)	37, 810
Eco147I	AGGCCT	1 cut(s)	809
Eco24I	GRGCYC	4 cut(s)	93, 118, 355, 818
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	197, 740
Eco47III	AGCGCT	1 cut(s)	562
Eco53kI	GAGCTC	3 cut(s)	91, 116, 353
Eco57I	CTGAAG	1 cut(s)	780
EcoICRI	GAGCTC	3 cut(s)	91, 116, 353
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	37, 810
EcoT38I	GRGCYC	4 cut(s)	93, 118, 355, 818
ErhI	CCWWGG	2 cut(s)	37, 810
FaeI	CATG	5 cut(s)	41, 85, 367, 421, 622
FaiI	YATR	7 cut(s)	39, 83, 248, 365, 419, 620, 785
FatI	CATG	5 cut(s)	37, 81, 363, 417, 618
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	684, 762, 765, 768
FokI	GGATG	2 cut(s)	563, 728
FriOI	GRGCYC	4 cut(s)	93, 118, 355, 818
Fsp4HI	GCNGC	4 cut(s)	684, 762, 765, 768
FspBI	CTAG	2 cut(s)	669, 758
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	4 cut(s)	684, 762, 765, 768
GsaI	CCCAGC	2 cut(s)	305, 668
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	180, 329, 809
HapII	CCGG	2 cut(s)	195, 276
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	5 cut(s)	41, 85, 367, 421, 622
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	2 cut(s)	411, 673
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	2 cut(s)	195, 276
HphI	GGTGA	2 cut(s)	98, 151
Hpy166II	GTNNAC	3 cut(s)	218, 265, 526
Hpy188I	TCNGA	2 cut(s)	494, 824
Hpy188III	TCNNGA	4 cut(s)	77, 406, 418, 566
Hpy8I	GTNNAC	3 cut(s)	218, 265, 526
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	17, 700
HpyCH4III	ACNGT	5 cut(s)	163, 172, 460, 470, 532
HpyCH4IV	ACGT	2 cut(s)	51, 156
HpyCH4V	TGCA	4 cut(s)	270, 542, 625, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 122, 494, 761, 767, 806
HpyF3I	CTNAG	4 cut(s)	126, 372, 498, 552
HpySE526I	ACGT	2 cut(s)	51, 156
Hsp92II	CATG	5 cut(s)	41, 85, 367, 421, 622
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	55, 249, 726
LmnI	GCTCC	6 cut(s)	73, 383, 449, 494, 595, 752
Lsp1109I	GCAGC	4 cut(s)	670, 748, 776, 779
MaeI	CTAG	2 cut(s)	669, 758
MaeII	ACGT	2 cut(s)	51, 156
MaeIII	GTNAC	7 cut(s)	157, 203, 290, 307, 359, 470, 566
MalI	GATC	3 cut(s)	57, 251, 728
MboI	GATC	3 cut(s)	55, 249, 726
MboII	GAAGA	4 cut(s)	32, 65, 139, 244
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	2 cut(s)	55, 726
MhlI	GDGCHC	5 cut(s)	93, 118, 355, 757, 818
MluCI	AATT	3 cut(s)	600, 801, 838
MlyI	GAGTC	1 cut(s)	563
MnlI	CCTC	6 cut(s)	69, 81, 155, 161, 269, 440
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	3 cut(s)	297, 804, 841
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	2 cut(s)	195, 276
MspR9I	CCNGG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	6 cut(s)	24, 122, 494, 761, 767, 806
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	55, 249, 726
NlaIII	CATG	5 cut(s)	41, 85, 367, 421, 622
NlaIV	GGNNCC	3 cut(s)	57, 385, 591
NmuCI	GTSAC	5 cut(s)	157, 203, 290, 307, 566
PagI	TCATGA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	809
PdmI	GAANNNNTTC	1 cut(s)	413
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	4 cut(s)	685, 763, 766, 769
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
Ppu21I	YACGTR	1 cut(s)	52
Psp124BI	GAGCTC	3 cut(s)	93, 118, 355
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	2 cut(s)	301, 664
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	57, 385, 591
PspPI	GGNCC	3 cut(s)	197, 328, 740
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	55, 726
PvuII	CAGCTG	1 cut(s)	305
SacI	GAGCTC	3 cut(s)	93, 118, 355
SaqAI	TTAA	3 cut(s)	297, 804, 841
SatI	GCNGC	4 cut(s)	684, 762, 765, 768
Sau3AI	GATC	3 cut(s)	55, 249, 726
Sau96I	GGNCC	3 cut(s)	197, 328, 740
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	5 cut(s)	93, 118, 355, 757, 818
SfcI	CTRYAG	2 cut(s)	109, 762
SinI	GGWCC	2 cut(s)	197, 740
Sse9I	AATT	3 cut(s)	600, 801, 838
SseBI	AGGCCT	1 cut(s)	809
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	2 cut(s)	669, 758
SstI	GAGCTC	3 cut(s)	93, 118, 355
StuI	AGGCCT	1 cut(s)	809
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	2 cut(s)	37, 810
TaaI	ACNGT	5 cut(s)	163, 172, 460, 470, 532
TaiI	ACGT	2 cut(s)	54, 159
TaqI	TCGA	2 cut(s)	5, 78
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	3 cut(s)	600, 801, 838
Tru1I	TTAA	3 cut(s)	297, 804, 841
Tru9I	TTAA	3 cut(s)	297, 804, 841
TscAI	CASTG	1 cut(s)	380
TseFI	GTSAC	5 cut(s)	157, 203, 290, 307, 566
TseI	GCWGC	4 cut(s)	683, 761, 764, 767
Tsp45I	GTSAC	5 cut(s)	157, 203, 290, 307, 566
TspDTI	ATGAA	4 cut(s)	121, 406, 434, 607
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	197, 740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	2 cut(s)	669, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.