Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002776.1

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Reverse (-)

86909 .. 88011

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002776.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgttgaaggaagtgagtgaagaaggtttagaggttcacgaagagcagcagcgtgagaaggactatgtagagccaccacaggttcctctcttggagctgggagagcttcaacgatggtcgttttacagagccgtgatagcagagtttgtcgccactcttctcttcctatatgtcacggttgccaccatcatcggacacaagaaggaagctgctcagtgtgacggcgtgggtgttcttggcattaattgcctgggccttcggtggcatgatcttcatcctgctttactccatcgctggaatctcagtataggcggtcacatcaaccctgcggtgactttcgggctgttggttgcgaggagggtgtcactgctccaaacagtggcttacattgttgcacaatgcttaggaggcatatgcggcgtagggttagtgaaagctttgatgaagcattactacctcacgcatggaggtggtgccaactcggttgctcctgattattccaaaggcgctgctttgggagctgaaatagttggcacttttcttctggtctacaggtttgctgtgtttatggttcacctggccaccatacctattactgggactgggatcaactctgctaggagttttgctgctgctgtaatctacaacaatgacaaagtctgggacgccagtggatattctgggtcggaccattcattggagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

235

Amino Acids

25.55

Weight (kDa)

6.19

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	2 cut(s)	379, 697
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	3 cut(s)	312, 329, 417
AclWI	GGATC	1 cut(s)	614
AcoI	YGGCCR	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	666
AfiI	CCNNNNNNNGG	3 cut(s)	379, 596, 697
AgsI	TTSAA	2 cut(s)	7, 110
AjnI	CCWGG	2 cut(s)	249, 576
AluBI	AGCT	6 cut(s)	97, 106, 209, 437, 521, 703
AluI	AGCT	6 cut(s)	97, 106, 209, 437, 521, 703
Alw21I	GWGCWC	1 cut(s)	705
AlwI	GGATC	1 cut(s)	614
AoxI	GGCC	2 cut(s)	253, 579
ApeKI	GCWGC	6 cut(s)	46, 49, 209, 509, 629, 632
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	253, 688
AsuHPI	GGTGA	2 cut(s)	343, 566
AvaII	GGWCC	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	705
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	6 cut(s)	58, 61, 196, 496, 616, 619
BccI	CCATC	3 cut(s)	108, 194, 297
BceAI	ACGGC	2 cut(s)	116, 238
BciT130I	CCWGG	2 cut(s)	251, 578
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	510
BisI	GCNGC	7 cut(s)	47, 50, 210, 418, 510, 630, 633
BlsI	GCNGC	7 cut(s)	48, 51, 211, 419, 511, 631, 634
Bme1390I	CCNGG	2 cut(s)	251, 578
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	253, 688
BmiI	GGNNCC	2 cut(s)	84, 475
BmrFI	CCNGG	2 cut(s)	251, 578
BmrI	ACTGGG	2 cut(s)	606, 612
BmuI	ACTGGG	2 cut(s)	606, 612
Bpu10I	CCTNAGC	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	666
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 596, 697
Bse1I	ACTGG	3 cut(s)	601, 607, 669
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	251, 578
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	379, 596, 697
BseMII	CTCAG	2 cut(s)	227, 316
BseNI	ACTGG	3 cut(s)	601, 607, 669
BseRI	GAGGAG	1 cut(s)	370
BseXI	GCAGC	6 cut(s)	58, 61, 196, 496, 616, 619
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	255, 581
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	705
BslFI	GGGAC	2 cut(s)	613, 677
BslI	CCNNNNNNNGG	3 cut(s)	379, 596, 697
BsmFI	GGGAC	2 cut(s)	613, 677
BsnI	GGCC	2 cut(s)	255, 581
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	2 cut(s)	268, 606
BspACI	CCGC	3 cut(s)	312, 329, 417
BspANI	GGCC	2 cut(s)	255, 581
BspCNI	CTCAG	2 cut(s)	226, 315
BspLI	GGNNCC	2 cut(s)	84, 475
BspPI	GGATC	1 cut(s)	614
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	601, 607, 669
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	268, 606
BssNI	GRCGYC	1 cut(s)	666
Bst2UI	CCWGG	2 cut(s)	251, 578
Bst4CI	ACNGT	2 cut(s)	178, 379
Bst6I	CTCTTC	3 cut(s)	36, 162, 167
BstACI	GRCGYC	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	213, 302, 403
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	271, 609
BstMBI	GATC	2 cut(s)	268, 606
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 137, 246, 408, 417, 518
BstNI	CCWGG	2 cut(s)	251, 578
BstSCI	CCNGG	2 cut(s)	249, 576
BstSFI	CTRYAG	1 cut(s)	550
BstV1I	GCAGC	6 cut(s)	58, 61, 196, 496, 616, 619
BsuRI	GGCC	2 cut(s)	255, 581
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	4 cut(s)	221, 365, 384, 676
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	253, 688
CseI	GACGC	1 cut(s)	674
CviAII	CATG	2 cut(s)	266, 464
DdeI	CTNAG	3 cut(s)	213, 302, 403
DpnI	GATC	2 cut(s)	270, 608
DpnII	GATC	2 cut(s)	268, 606
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	36, 162, 167
EarI	CTCTTC	3 cut(s)	36, 162, 167
Ecl136II	GAGCTC	1 cut(s)	703
Eco24I	GRGCYC	1 cut(s)	705
Eco47I	GGWCC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	703
EcoICRI	GAGCTC	1 cut(s)	703
EcoRII	CCWGG	2 cut(s)	249, 576
EcoT38I	GRGCYC	1 cut(s)	705
FaeI	CATG	2 cut(s)	269, 467
FaqI	GGGAC	2 cut(s)	613, 677
FatI	CATG	2 cut(s)	265, 463
FauNDI	CATATG	1 cut(s)	413
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	7 cut(s)	47, 50, 210, 418, 510, 630, 633
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	7 cut(s)	47, 50, 210, 418, 510, 630, 633
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	7 cut(s)	47, 50, 210, 418, 510, 630, 633
GsaI	CCCAGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	255, 581
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	666
Hin1II	CATG	2 cut(s)	269, 467
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	1 cut(s)	298
HphI	GGTGA	2 cut(s)	343, 566
Hpy166II	GTNNAC	3 cut(s)	37, 550, 574
Hpy188I	TCNGA	3 cut(s)	194, 688, 707
Hpy188III	TCNNGA	2 cut(s)	38, 491
Hpy8I	GTNNAC	3 cut(s)	37, 550, 574
HpyAV	CCTTC	4 cut(s)	17, 52, 196, 266
HpyCH4III	ACNGT	2 cut(s)	178, 379
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 137, 246, 408, 417, 518
HpyF3I	CTNAG	3 cut(s)	213, 302, 403
Hsp92I	GRCGYC	1 cut(s)	666
Hsp92II	CATG	2 cut(s)	269, 467
HspAI	GCGC	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	268, 606
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	5 cut(s)	94, 375, 493, 518, 700
Lsp1109I	GCAGC	6 cut(s)	58, 61, 196, 496, 616, 619
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	5 cut(s)	172, 218, 314, 331, 363
MalI	GATC	2 cut(s)	270, 608
MboI	GATC	2 cut(s)	268, 606
MboII	GAAGA	6 cut(s)	32, 53, 149, 154, 263, 533
MhlI	GDGCHC	1 cut(s)	705
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	1 cut(s)	244
MluNI	TGGCCA	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	7 cut(s)	25, 96, 348, 351, 401, 461, 467
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	251, 578
MvaI	CCWGG	2 cut(s)	251, 578
MwoI	GCNNNNNNNGC	6 cut(s)	103, 137, 246, 408, 417, 518
NdeI	CATATG	1 cut(s)	413
NdeII	GATC	2 cut(s)	268, 606
NlaIII	CATG	2 cut(s)	269, 467
NlaIV	GGNNCC	2 cut(s)	84, 475
NmuCI	GTSAC	5 cut(s)	172, 218, 314, 331, 363
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	656
PflMI	CCANNNNNTGG	2 cut(s)	379, 697
PkrI	GCNGC	7 cut(s)	48, 51, 211, 419, 511, 631, 634
PshBI	ATTAAT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	705
Psp6I	CCWGG	2 cut(s)	249, 576
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	249, 576
PspN4I	GGNNCC	2 cut(s)	84, 475
PspPI	GGNCC	2 cut(s)	253, 688
PsyI	GACNNNGTC	1 cut(s)	656
RseI	CAYNNNNRTG	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	7 cut(s)	47, 50, 210, 418, 510, 630, 633
Sau3AI	GATC	2 cut(s)	268, 606
Sau96I	GGNCC	2 cut(s)	253, 688
ScrFI	CCNGG	2 cut(s)	251, 578
SduI	GDGCHC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	550
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	3 cut(s)	312, 329, 417
SspMI	CTAG	1 cut(s)	618
SstI	GAGCTC	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	249, 576
TaaI	ACNGT	2 cut(s)	178, 379
TasI	AATT	1 cut(s)	244
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	4 cut(s)	221, 372, 384, 676
TseFI	GTSAC	5 cut(s)	172, 218, 314, 331, 363
TseI	GCWGC	6 cut(s)	46, 49, 209, 509, 629, 632
Tsp45I	GTSAC	5 cut(s)	172, 218, 314, 331, 363
TspDTI	ATGAA	3 cut(s)	263, 458, 684
TspRI	CASTG	4 cut(s)	221, 372, 384, 676
Tth111I	GACNNNGTC	1 cut(s)	656
Van91I	CCANNNNNTGG	2 cut(s)	379, 697
VpaK11BI	GGWCC	1 cut(s)	688
VspI	ATTAAT	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.