Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Forward (+)

62048711 .. 62049868

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGAAAGAAGAAGTGACTGAAGAAGGAGAGGTGTTCTCTCATGATCAGCAACCTAGAGACTACAGCGAACCGGCACCGGCACCGCTCTTTGATGCCGGAGAGCTCAGCCTCTGGTCCTTTTACAGAGCCGTGATTGCCGAGTTCATCGCCAGCCTTCTGTTTTTGTACATCACAGTCGCTACAGTAATAGGGTATCAAAAAGAATCGAACCCATGCGACACTATTGGAGTCTTGGGGATTGCATGGTCTTTCGGAGGCATGATTTTCATCCTTGTATATTCCACTGCTGGAATTTCGGGTGGTCACATAAATCCAGCGGTGACGTTCGGATTGTTCTTGGCAAGGAAGGTTTCGTTGGTAAGGGCAGTGGCATACATAGTAGCACAGTGCTTAGGAGCAATATGTGGAGTTGGGTTGGTAAAGGGAGTGATAAAGCATTACTATGAAAGCTCACCAGGTGGAGGTGCCAATACGGTGGCTGCTGGCTACTCTAATGGAACCGCTTTGGGAGCTGAGATTATCGGAACTTTTGTGCTGGTCTACACCGTCTTCTCTGCCACCGATCCTAAGAGAAACGCACGAGATTCTCACGTACCTGTTTTGGCCCCGTTGCCGATTGGGTTTGCGGTGTTTGTGGTGCACTTGGCCACGATTCCCATCACAGGGACGGGGATCAACCCTGCTCGGAGCTTGGGAGCAGCCTGGATATTCTGGGTTGGGCCCCTTGTTGGGGCACTGGCTGCCGCAATTTACCATGAGCACATATTGAGAGCCACCGCCATAAAGGCTTTGGGATCTTTCACAGCCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

271

Amino Acids

28.58

Weight (kDa)

6.37

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	36 - 253	2.2e-73	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	76, 82, 467
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	7 cut(s)	86, 320, 504, 629, 747, 780, 811
AclWI	GGATC	3 cut(s)	560, 683, 805
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	170, 597
AfiI	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 731, 732, 733
AjnI	CCWGG	2 cut(s)	457, 704
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	4 cut(s)	106, 453, 515, 693
AluI	AGCT	4 cut(s)	106, 453, 515, 693
Alw21I	GWGCWC	3 cut(s)	108, 645, 765
Alw26I	GTCTC	1 cut(s)	54
Alw44I	GTGCAC	1 cut(s)	641
AlwI	GGATC	3 cut(s)	560, 683, 805
AlwNI	CAGNNNCTG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	606, 648, 722
ApaI	GGGCCC	1 cut(s)	726
ApaLI	GTGCAC	1 cut(s)	641
ApeKI	GCWGC	3 cut(s)	482, 701, 743
ApoI	RAATTY	1 cut(s)	294
AspS9I	GGNCC	4 cut(s)	117, 607, 722, 723
AsuHPI	GGTGA	2 cut(s)	334, 447
AvaII	GGWCC	1 cut(s)	117
BaeGI	GKGCMC	3 cut(s)	645, 726, 739
BalI	TGGCCA	1 cut(s)	650
BanI	GGYRCC	3 cut(s)	76, 82, 467
BanII	GRGCYC	2 cut(s)	108, 726
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	3 cut(s)	108, 645, 765
BbvI	GCAGC	3 cut(s)	469, 713, 730
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	2 cut(s)	459, 706
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	2 cut(s)	64, 183
BglI	GCCNNNNNGGC	1 cut(s)	788
BisI	GCNGC	4 cut(s)	483, 702, 744, 747
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	4 cut(s)	484, 703, 745, 748
Bme1390I	CCNGG	2 cut(s)	459, 706
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	4 cut(s)	117, 607, 722, 723
BmiI	GGNNCC	7 cut(s)	78, 84, 469, 502, 609, 724, 725
BmrFI	CCNGG	2 cut(s)	459, 706
BmsI	GCATC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	544
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bpu10I	CCTNAGC	1 cut(s)	394
Bpu1102I	GCTNAGC	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	595
BsaBI	GATNNNNATC	2 cut(s)	269, 659
Bsc4I	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 731, 732, 733
Bse118I	RCCGGY	2 cut(s)	73, 79
Bse1I	ACTGG	1 cut(s)	744
Bse8I	GATNNNNATC	2 cut(s)	269, 659
BseBI	CCWGG	2 cut(s)	459, 706
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	2 cut(s)	269, 659
BseLI	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 731, 732, 733
BseMII	CTCAG	2 cut(s)	121, 507
BseNI	ACTGG	1 cut(s)	744
BseSI	GKGCMC	3 cut(s)	645, 726, 739
BseXI	GCAGC	3 cut(s)	469, 713, 730
BshFI	GGCC	3 cut(s)	608, 650, 724
BshNI	GGYRCC	3 cut(s)	76, 82, 467
BsiHKAI	GWGCWC	3 cut(s)	108, 645, 765
BsiSI	CCGG	3 cut(s)	74, 80, 99
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	6 cut(s)	464, 665, 666, 731, 732, 733
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	3 cut(s)	608, 650, 724
Bsp120I	GGGCCC	1 cut(s)	722
Bsp1286I	GDGCHC	5 cut(s)	108, 645, 726, 739, 765
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	46, 565, 675, 797
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	7 cut(s)	86, 320, 504, 629, 747, 780, 811
BspANI	GGCC	3 cut(s)	608, 650, 724
BspCNI	CTCAG	2 cut(s)	120, 508
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	7 cut(s)	78, 84, 469, 502, 609, 724, 725
BspPI	GGATC	3 cut(s)	560, 683, 805
BspT107I	GGYRCC	3 cut(s)	76, 82, 467
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	2 cut(s)	73, 79
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	744
BssAI	RCCGGY	2 cut(s)	73, 79
BssMI	GATC	4 cut(s)	46, 565, 675, 797
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	459, 706
Bst4CI	ACNGT	5 cut(s)	178, 187, 390, 478, 550
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	595
BstC8I	GCNNGC	3 cut(s)	154, 487, 811
BstDEI	CTNAG	4 cut(s)	107, 394, 516, 570
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	4 cut(s)	49, 568, 678, 800
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	46, 565, 675, 797
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 512, 743, 788
BstNI	CCWGG	2 cut(s)	459, 706
BstSCI	CCNGG	2 cut(s)	457, 704
BstSFI	CTRYAG	2 cut(s)	64, 183
BstSLI	GKGCMC	3 cut(s)	645, 726, 739
BstV1I	GCAGC	3 cut(s)	469, 713, 730
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	797
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	797
BsuRI	GGCC	3 cut(s)	608, 650, 724
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	270
BtsI	GCAGTG	2 cut(s)	285, 375
BtsIMutI	CAGTG	4 cut(s)	285, 375, 395, 737
Cac8I	GCNNGC	3 cut(s)	154, 487, 811
CaiI	CAGNNNCTG	1 cut(s)	114
CciI	TCATGA	1 cut(s)	43
Cfr10I	RCCGGY	2 cut(s)	73, 79
Cfr13I	GGNCC	4 cut(s)	117, 607, 722, 723
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	169, 596
CviAII	CATG	5 cut(s)	44, 216, 246, 262, 758
CviQI	GTAC	2 cut(s)	169, 596
DdeI	CTNAG	4 cut(s)	107, 394, 516, 570
DpnI	GATC	4 cut(s)	48, 567, 677, 799
DpnII	GATC	4 cut(s)	46, 565, 675, 797
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	648
Ecl136II	GAGCTC	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	108, 726
Eco47I	GGWCC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	457, 704
EcoT38I	GRGCYC	2 cut(s)	108, 726
FaeI	CATG	5 cut(s)	47, 219, 249, 265, 761
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	5 cut(s)	43, 215, 245, 261, 757
FbaI	TGATCA	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	4 cut(s)	483, 702, 744, 747
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	2 cut(s)	108, 726
Fsp4HI	GCNGC	4 cut(s)	483, 702, 744, 747
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	4 cut(s)	483, 702, 744, 747
HaeIII	GGCC	3 cut(s)	608, 650, 724
HapII	CCGG	3 cut(s)	74, 80, 99
Hin1II	CATG	5 cut(s)	47, 219, 249, 265, 761
HinfI	GANTC	4 cut(s)	206, 231, 587, 655
HpaII	CCGG	3 cut(s)	74, 80, 99
HphI	GGTGA	2 cut(s)	334, 447
Hpy166II	GTNNAC	2 cut(s)	544, 643
Hpy188I	TCNGA	4 cut(s)	257, 332, 527, 690
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	544, 643
HpyAV	CCTTC	3 cut(s)	20, 167, 343
HpyCH4III	ACNGT	5 cut(s)	178, 187, 390, 478, 550
HpyCH4IV	ACGT	2 cut(s)	326, 594
HpyCH4V	TGCA	2 cut(s)	245, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 512, 743, 788
HpyF3I	CTNAG	4 cut(s)	107, 394, 516, 570
HpySE526I	ACGT	2 cut(s)	326, 594
Hsp92II	CATG	5 cut(s)	47, 219, 249, 265, 761
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	46, 565, 675, 797
LmnI	GCTCC	4 cut(s)	398, 512, 690, 698
Lsp1109I	GCAGC	3 cut(s)	469, 713, 730
LweI	GCATC	1 cut(s)	85
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	326, 594
MaeIII	GTNAC	3 cut(s)	16, 305, 322
MalI	GATC	4 cut(s)	48, 567, 677, 799
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	4 cut(s)	46, 565, 675, 797
MboII	GAAGA	3 cut(s)	23, 35, 544
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	5 cut(s)	108, 645, 726, 739, 765
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	2 cut(s)	294, 750
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	25, 122, 251, 458
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	2 cut(s)	320, 813
MspI	CCGG	3 cut(s)	74, 80, 99
MspR9I	CCNGG	2 cut(s)	459, 706
MvaI	CCWGG	2 cut(s)	459, 706
MwoI	GCNNNNNNNGC	4 cut(s)	137, 512, 743, 788
NdeII	GATC	4 cut(s)	46, 565, 675, 797
NlaIII	CATG	5 cut(s)	47, 219, 249, 265, 761
NlaIV	GGNNCC	7 cut(s)	78, 84, 469, 502, 609, 724, 725
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	16, 305, 322
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	3 cut(s)	206, 587, 655
PkrI	GCNGC	4 cut(s)	484, 703, 745, 748
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	595
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	457, 704
PspGI	CCWGG	2 cut(s)	457, 704
PspN4I	GGNNCC	7 cut(s)	78, 84, 469, 502, 609, 724, 725
PspOMI	GGGCCC	1 cut(s)	722
PspPI	GGNCC	4 cut(s)	117, 607, 722, 723
PstNI	CAGNNNCTG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	2 cut(s)	170, 597
RsaNI	GTAC	2 cut(s)	169, 596
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	108
SatI	GCNGC	4 cut(s)	483, 702, 744, 747
Sau3AI	GATC	4 cut(s)	46, 565, 675, 797
Sau96I	GGNCC	4 cut(s)	117, 607, 722, 723
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	459, 706
SduI	GDGCHC	5 cut(s)	108, 645, 726, 739, 765
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	2 cut(s)	64, 183
SinI	GGWCC	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	294, 750
SsiI	CCGC	7 cut(s)	86, 320, 504, 629, 747, 780, 811
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	457, 704
TaaI	ACNGT	5 cut(s)	178, 187, 390, 478, 550
TaiI	ACGT	2 cut(s)	329, 597
TaqI	TCGA	2 cut(s)	5, 209
TasI	AATT	2 cut(s)	294, 750
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	3 cut(s)	206, 587, 655
TscAI	CASTG	4 cut(s)	292, 375, 395, 744
TseFI	GTSAC	3 cut(s)	16, 305, 322
TseI	GCWGC	3 cut(s)	482, 701, 743
Tsp45I	GTSAC	3 cut(s)	16, 305, 322
TspDTI	ATGAA	3 cut(s)	136, 259, 462
TspRI	CASTG	4 cut(s)	292, 375, 395, 744
VneI	GTGCAC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.