Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Forward (+)

14221277 .. 14222427

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCTAAGGAAGTAATCGAGGAGGGACAGGCCCGCCACCATGGGAAGGACTACGTTGACCCACCGCCAGCTCCTCTCTTTGACACGGACGAGCTCAAGCGCTGGTCCTTCTATAGGGCCCTCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTAGCCACCGTCATCGGCCACAAGTCCTCACCCGGCGACTGCGGCGGCGTTGGCCTTCTGGGCATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGTACCGCCGGAATCTCTGGTGGCCACATTAACCCAGCCGTTACGTTTGGCCTTTTCTTGGCCCGCAAGGTCTCGCTGATCAGAGCCGTGGCTTACATCGTTGCCCAGTGCTTGGGAGCCATCGCAGGCGTTGGGCTGGTGAAGGCCTTCCAGAAGCACAACTACAACTCCCTCGGCGGCGGCGCCAACTCCGTGTCTCCTGGCTACAGCAAGGGCACTGCTCTGGGTGCTGAGATCATCGGCACCTTCGTCCTCGTTTACACCGTCTTCTCAGCCACTGACCCCAAAAGGAGCGCACGTGACTCCCACGTGCCTGTTTTGGCTCCACTGCCCATTGGGTTTGCTGTGTTTGTTGTGCACCTGGCAACAATCCCCATCACCGGAACTGGAATCAACCCAGCAAGGAGCTTCGGCGCTGCTGTGATATACAACAATGAGAAAGTCTGGGATGACCACTGGATCTTCTGGGTCGGACCATTTGTGGGAGCACTGGGAGCGGCGGCGTACCACCAGTACATCCTGAGGGCGGCGGCGATCAAGGCGTTGGGATCATTCCGCAGCAACCCCACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

282

Amino Acids

29.81

Weight (kDa)

9.08

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	452, 512
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	767
AccI	GTMKAC	1 cut(s)	267
AclWI	GGATC	2 cut(s)	737, 826
AcoI	YGGCCR	2 cut(s)	181, 292
AcvI	CACGTG	2 cut(s)	569, 580
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	3 cut(s)	274, 776, 785
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	7 cut(s)	46, 114, 328, 382, 650, 752, 796
AjnI	CCWGG	3 cut(s)	233, 469, 630
AluBI	AGCT	3 cut(s)	71, 94, 678
AluI	AGCT	3 cut(s)	71, 94, 678
Alw21I	GWGCWC	3 cut(s)	96, 630, 760
Alw26I	GTCTC	2 cut(s)	346, 471
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	2 cut(s)	737, 826
AlwNI	CAGNNNCTG	1 cut(s)	548
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	9 cut(s)	30, 117, 181, 217, 237, 292, 319, 330, 414
ApaI	GGGCCC	1 cut(s)	121
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	2 cut(s)	686, 828
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	4 cut(s)	102, 455, 566, 686
AspS9I	GGNCC	7 cut(s)	31, 105, 117, 118, 237, 331, 743
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	4 cut(s)	154, 186, 421, 640
AvaII	GGWCC	2 cut(s)	105, 743
AxyI	CCTNAGG	1 cut(s)	791
BaeGI	GKGCMC	3 cut(s)	121, 488, 630
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	2 cut(s)	452, 512
BanII	GRGCYC	2 cut(s)	96, 121
BarI	GAAGNNNNNNTAC	2 cut(s)	416, 448
BbrPI	CACGTG	2 cut(s)	569, 580
BbsI	GAAGAC	1 cut(s)	529
Bbv12I	GWGCWC	3 cut(s)	96, 630, 760
BbvI	GCAGC	2 cut(s)	673, 840
BccI	CCATC	2 cut(s)	398, 653
BceAI	ACGGC	2 cut(s)	293, 341
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	3 cut(s)	235, 471, 632
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	346, 471
BfmI	CTRYAG	2 cut(s)	112, 475
BfoI	RGCGCY	3 cut(s)	103, 456, 687
BglI	GCCNNNNNGGC	1 cut(s)	225
Bme1390I	CCNGG	4 cut(s)	198, 235, 471, 632
Bme18I	GGWCC	2 cut(s)	105, 743
BmgT120I	GGNCC	7 cut(s)	31, 105, 117, 118, 237, 331, 743
BmiI	GGNNCC	5 cut(s)	119, 388, 454, 514, 594
BmrFI	CCNGG	4 cut(s)	198, 235, 471, 632
BmrI	ACTGGG	2 cut(s)	370, 770
BmsI	GCATC	1 cut(s)	237
BmuI	ACTGGG	2 cut(s)	370, 770
BpiI	GAAGAC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	2 cut(s)	569, 580
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	4 cut(s)	40, 234, 357, 442
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	4 cut(s)	422, 452, 553, 583
Bsc4I	CCNNNNNNNGG	7 cut(s)	46, 114, 328, 382, 650, 752, 796
Bse1I	ACTGG	5 cut(s)	376, 661, 731, 765, 781
Bse21I	CCTNAGG	1 cut(s)	791
BseBI	CCWGG	3 cut(s)	235, 471, 632
BseDI	CCNNGG	4 cut(s)	40, 234, 357, 442
BseGI	GGATG	2 cut(s)	724, 786
BseLI	CCNNNNNNNGG	7 cut(s)	46, 114, 328, 382, 650, 752, 796
BseMII	CTCAG	3 cut(s)	492, 555, 782
BseNI	ACTGG	5 cut(s)	376, 661, 731, 765, 781
BseRI	GAGGAG	3 cut(s)	35, 63, 137
BseSI	GKGCMC	3 cut(s)	121, 488, 630
BseXI	GCAGC	2 cut(s)	673, 840
BseYI	CCCAGC	2 cut(s)	304, 667
BshFI	GGCC	9 cut(s)	32, 119, 183, 219, 239, 294, 321, 332, 416
BshNI	GGYRCC	2 cut(s)	452, 512
BsiHKAI	GWGCWC	3 cut(s)	96, 630, 760
BsiSI	CCGG	3 cut(s)	198, 279, 651
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	7 cut(s)	46, 114, 328, 382, 650, 752, 796
BsmAI	GTCTC	2 cut(s)	346, 471
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	9 cut(s)	32, 119, 183, 219, 239, 294, 321, 332, 416
Bso31I	GGTCTC	1 cut(s)	346
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	5 cut(s)	96, 121, 488, 630, 760
Bsp143I	GATC	5 cut(s)	348, 504, 729, 804, 818
Bsp19I	CCATGG	1 cut(s)	40
BspANI	GGCC	9 cut(s)	32, 119, 183, 219, 239, 294, 321, 332, 416
BspCNI	CTCAG	3 cut(s)	493, 554, 783
BspLI	GGNNCC	5 cut(s)	119, 388, 454, 514, 594
BspPI	GGATC	2 cut(s)	737, 826
BspT107I	GGYRCC	2 cut(s)	452, 512
BspTNI	GGTCTC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	767
BsrI	ACTGG	5 cut(s)	376, 661, 731, 765, 781
BssECI	CCNNGG	4 cut(s)	40, 234, 357, 442
BssMI	GATC	5 cut(s)	348, 504, 729, 804, 818
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	3 cut(s)	235, 471, 632
Bst4CI	ACNGT	4 cut(s)	166, 175, 272, 535
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	453
BstBAI	YACGTR	2 cut(s)	569, 580
BstC8I	GCNNGC	4 cut(s)	34, 69, 334, 397
BstDEI	CTNAG	4 cut(s)	6, 501, 541, 791
BstDSI	CCRYGG	2 cut(s)	40, 357
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	724, 786
BstH2I	RGCGCY	3 cut(s)	103, 456, 687
BstHHI	GCGC	4 cut(s)	102, 455, 566, 686
BstKTI	GATC	5 cut(s)	351, 507, 732, 807, 821
BstMAI	GTCTC	2 cut(s)	346, 471
BstMBI	GATC	5 cut(s)	348, 504, 729, 804, 818
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 207, 216, 225, 497, 764, 809
BstNI	CCWGG	3 cut(s)	235, 471, 632
BstSCI	CCNGG	4 cut(s)	196, 233, 469, 630
BstSFI	CTRYAG	2 cut(s)	112, 475
BstSLI	GKGCMC	3 cut(s)	121, 488, 630
BstV1I	GCAGC	2 cut(s)	673, 840
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
Bsu36I	CCTNAGG	1 cut(s)	791
BsuRI	GGCC	9 cut(s)	32, 119, 183, 219, 239, 294, 321, 332, 416
BtgI	CCRYGG	2 cut(s)	40, 357
BtgZI	GCGATG	4 cut(s)	109, 121, 214, 376
BtsCI	GGATG	2 cut(s)	724, 786
BtsI	GCAGTG	2 cut(s)	486, 596
BtsIMutI	CAGTG	6 cut(s)	383, 486, 546, 596, 724, 758
Cac8I	GCNNGC	4 cut(s)	34, 69, 334, 397
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	4 cut(s)	102, 455, 566, 686
Cfr13I	GGNCC	7 cut(s)	31, 105, 117, 118, 237, 331, 743
Csp6I	GTAC	3 cut(s)	273, 775, 784
CviAII	CATG	2 cut(s)	41, 250
CviQI	GTAC	3 cut(s)	273, 775, 784
DdeI	CTNAG	4 cut(s)	6, 501, 541, 791
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	5 cut(s)	350, 506, 731, 806, 820
DpnII	GATC	5 cut(s)	348, 504, 729, 804, 818
EaeI	YGGCCR	2 cut(s)	181, 292
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	2 cut(s)	96, 121
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	105, 743
Eco47III	AGCGCT	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	94
Eco72I	CACGTG	2 cut(s)	569, 580
Eco81I	CCTNAGG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	2 cut(s)	117, 118
EcoRII	CCWGG	3 cut(s)	233, 469, 630
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	96, 121
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	44, 253
FaiI	YATR	4 cut(s)	42, 114, 251, 697
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	40, 249
FauI	CCCGC	2 cut(s)	41, 341
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	267
FokI	GGATG	2 cut(s)	731, 773
FriOI	GRGCYC	2 cut(s)	96, 121
GlaI	GCGC	4 cut(s)	101, 454, 565, 685
GsaI	CCCAGC	2 cut(s)	308, 671
HaeII	RGCGCY	3 cut(s)	103, 456, 687
HaeIII	GGCC	9 cut(s)	32, 119, 183, 219, 239, 294, 321, 332, 416
HapII	CCGG	3 cut(s)	198, 279, 651
HhaI	GCGC	4 cut(s)	102, 455, 566, 686
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	2 cut(s)	44, 253
Hin6I	GCGC	4 cut(s)	100, 453, 564, 684
HinP1I	GCGC	4 cut(s)	100, 453, 564, 684
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	282, 572, 660
HpaII	CCGG	3 cut(s)	198, 279, 651
HphI	GGTGA	4 cut(s)	154, 186, 421, 640
Hpy166II	GTNNAC	4 cut(s)	58, 268, 529, 628
Hpy188I	TCNGA	2 cut(s)	353, 743
Hpy188III	TCNNGA	2 cut(s)	421, 790
Hpy8I	GTNNAC	4 cut(s)	58, 268, 529, 628
HpyAV	CCTTC	7 cut(s)	40, 118, 230, 250, 406, 427, 526
HpyCH4III	ACNGT	4 cut(s)	166, 175, 272, 535
HpyCH4IV	ACGT	5 cut(s)	54, 159, 314, 568, 579
HpyCH4V	TGCA	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 207, 216, 225, 497, 764, 809
HpyF3I	CTNAG	4 cut(s)	6, 501, 541, 791
HpySE526I	ACGT	5 cut(s)	54, 159, 314, 568, 579
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	44, 253
HspAI	GCGC	4 cut(s)	100, 453, 564, 684
KasI	GGCGCC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	5 cut(s)	348, 504, 729, 804, 818
LmnI	GCTCC	7 cut(s)	76, 386, 561, 598, 675, 755, 764
Lsp1109I	GCAGC	2 cut(s)	673, 840
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	5 cut(s)	54, 159, 314, 568, 579
MaeIII	GTNAC	3 cut(s)	160, 310, 569
MalI	GATC	5 cut(s)	350, 506, 731, 806, 820
MbiI	CCGCTC	1 cut(s)	767
MboI	GATC	5 cut(s)	348, 504, 729, 804, 818
MboII	GAAGA	3 cut(s)	142, 529, 724
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	5 cut(s)	96, 121, 488, 630, 760
MlsI	TGGCCA	1 cut(s)	294
MluNI	TGGCCA	1 cut(s)	294
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	721
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	3 cut(s)	198, 279, 651
MspR9I	CCNGG	4 cut(s)	198, 235, 471, 632
MvaI	CCWGG	3 cut(s)	235, 471, 632
MwoI	GCNNNNNNNGC	7 cut(s)	125, 207, 216, 225, 497, 764, 809
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	5 cut(s)	348, 504, 729, 804, 818
NlaIII	CATG	2 cut(s)	44, 253
NlaIV	GGNNCC	5 cut(s)	119, 388, 454, 514, 594
NmeAIII	GCCGAG	2 cut(s)	154, 423
NmuCI	GTSAC	2 cut(s)	160, 569
PceI	AGGCCT	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	516, 531
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	282, 660
PflMI	CCANNNNNTGG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	566
PluTI	GGCGCC	1 cut(s)	456
PmaCI	CACGTG	2 cut(s)	569, 580
PmlI	CACGTG	2 cut(s)	569, 580
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	2 cut(s)	569, 580
Psp124BI	GAGCTC	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	233, 469, 630
PspCI	CACGTG	2 cut(s)	569, 580
PspFI	CCCAGC	2 cut(s)	304, 667
PspGI	CCWGG	3 cut(s)	233, 469, 630
PspN4I	GGNNCC	5 cut(s)	119, 388, 454, 514, 594
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	7 cut(s)	31, 105, 117, 118, 237, 331, 743
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	729
RsaI	GTAC	3 cut(s)	274, 776, 785
RsaNI	GTAC	3 cut(s)	273, 775, 784
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	348, 504, 729, 804, 818
Sau96I	GGNCC	7 cut(s)	31, 105, 117, 118, 237, 331, 743
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	4 cut(s)	198, 235, 471, 632
SduI	GDGCHC	5 cut(s)	96, 121, 488, 630, 760
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	2 cut(s)	112, 475
SfoI	GGCGCC	1 cut(s)	454
SinI	GGWCC	2 cut(s)	105, 743
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	416
SspDI	GGCGCC	1 cut(s)	452
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	4 cut(s)	196, 233, 469, 630
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	4 cut(s)	166, 175, 272, 535
TaiI	ACGT	5 cut(s)	57, 162, 317, 571, 582
TaqI	TCGA	1 cut(s)	18
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	9 cut(s)	210, 213, 249, 450, 453, 770, 773, 800, 803
TfiI	GAWTC	2 cut(s)	282, 660
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	6 cut(s)	383, 493, 553, 603, 731, 765
TseFI	GTSAC	2 cut(s)	160, 569
TseI	GCWGC	2 cut(s)	686, 828
Tsp45I	GTSAC	2 cut(s)	160, 569
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	2 cut(s)	101, 451
TspRI	CASTG	6 cut(s)	383, 493, 553, 603, 731, 765
Van91I	CCANNNNNTGG	1 cut(s)	382
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	105, 743
XagI	CCTNNNNNAGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.