Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00162

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Reverse (-)

64244 .. 65386

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTGAAGGAAGTGAGTGAAGAAGGTTTAGAGGTTCACGAAGAGCAGCAGCGTGAGAAGGACTATGTAGAGCCACCACAGGTTCCTCTCTTGGAGCTGGGAGAGCTTCAACGATGGTCGTTTTACGCTGCTCAGTGTGACGGCGTTGGTGTTCTTGGCATTAATTGCCTGGGCCTTCGGCGTGGCATGATCTTCATCCTGCTTTACTCCATCGCTGGAATCTCAGGCGGTCACATCAACCCTGCGGTGACTTTCGGGCTGTTGGTTGCGAGGAGGGTGTCACTGCTCCGAACATTGGCTTACATTGTTGCACAATGCTTAGGAGGCATATGCGGCGTAGGGTTTGTGAAAGCTTTGATGAAGCATTACTACCTCACGCATGGAGGTGGTGCCAACTCGGTTGCTCCTGATTATTCCAAAGGCGCTGCTTTGGGAGCTGAAATAGTTGGCACTTTTCTTCTGGTATTGGTTCCATTACCAATAGGGTTTGCTGTGTTTATGGTTCACCTGGCCACCATACCTATTACTGGGACTGGGATCAACTCTGCTAGGAGTTTTGCTGCTGCTGTAATCTACAACAATGACAAAGTCTGGGACGACCAGTGGATATTCTGGGTCGGACCATTCATTGGAGCTCTGATAGCAGCAGCTTATAACCGGTACGTACTGATAGCAGCAGCTAGTAAAGCCTTCAGATCGTTCCACAACAATACCACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

240

Amino Acids

25.95

Weight (kDa)

7.0

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	63 - 157	6.3e-29	Major intrinsic protein
MIP	PF00230	156 - 217	4e-21	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	629
AciI	CCGC	3 cut(s)	228, 245, 333
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	510
AcuI	CTGAAG	1 cut(s)	676
AfaI	GTAC	2 cut(s)	662, 666
AfiI	CCNNNNNNNGG	3 cut(s)	295, 527, 629
AgeI	ACCGGT	1 cut(s)	657
AgsI	TTSAA	2 cut(s)	7, 110
AjnI	CCWGG	2 cut(s)	168, 507
AluBI	AGCT	7 cut(s)	97, 106, 353, 437, 635, 650, 680
AluI	AGCT	7 cut(s)	97, 106, 353, 437, 635, 650, 680
Alw21I	GWGCWC	1 cut(s)	637
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	2 cut(s)	172, 510
AseI	ATTAAT	1 cut(s)	162
AsiGI	ACCGGT	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	2 cut(s)	172, 620
AsuHPI	GGTGA	2 cut(s)	259, 497
AvaII	GGWCC	1 cut(s)	620
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	637
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
Bbv12I	GWGCWC	1 cut(s)	637
BccI	CCATC	2 cut(s)	108, 218
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	170, 509
BfaI	CTAG	2 cut(s)	549, 681
BfoI	RGCGCY	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	170, 509
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	2 cut(s)	172, 620
BmiI	GGNNCC	3 cut(s)	84, 391, 471
BmrFI	CCNGG	2 cut(s)	170, 509
BmrI	ACTGGG	2 cut(s)	537, 543
BmuI	ACTGGG	2 cut(s)	537, 543
Bpu10I	CCTNAGC	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 527, 629
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	3 cut(s)	532, 538, 601
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	170, 509
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	295, 527, 629
BseMII	CTCAG	2 cut(s)	146, 237
BseNI	ACTGG	3 cut(s)	532, 538, 601
BseRI	GAGGAG	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	174, 512
BshNI	GGYRCC	1 cut(s)	389
BshTI	ACCGGT	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	658
BslFI	GGGAC	2 cut(s)	544, 608
BslI	CCNNNNNNNGG	3 cut(s)	295, 527, 629
BsmFI	GGGAC	2 cut(s)	544, 608
BsnI	GGCC	2 cut(s)	174, 512
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	189, 537, 695
BspACI	CCGC	3 cut(s)	228, 245, 333
BspANI	GGCC	2 cut(s)	174, 512
BspCNI	CTCAG	2 cut(s)	145, 236
BspLI	GGNNCC	3 cut(s)	84, 391, 471
BspPI	GGATC	1 cut(s)	545
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	657
BsrI	ACTGG	3 cut(s)	532, 538, 601
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	189, 537, 695
Bst2UI	CCWGG	2 cut(s)	170, 509
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	664
BstDEI	CTNAG	3 cut(s)	132, 223, 319
BstF5I	GGATG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	192, 540, 698
BstMBI	GATC	3 cut(s)	189, 537, 695
BstMWI	GCNNNNNNNGC	7 cut(s)	103, 165, 324, 333, 434, 641, 686
BstNI	CCWGG	2 cut(s)	170, 509
BstSCI	CCNGG	2 cut(s)	168, 507
BstSNI	TACGTA	1 cut(s)	664
BsuRI	GGCC	2 cut(s)	174, 512
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	3 cut(s)	140, 281, 608
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	2 cut(s)	172, 620
Csp6I	GTAC	2 cut(s)	661, 665
CspAI	ACCGGT	1 cut(s)	657
CviAII	CATG	2 cut(s)	187, 380
CviQI	GTAC	2 cut(s)	661, 665
DdeI	CTNAG	3 cut(s)	132, 223, 319
DpnI	GATC	3 cut(s)	191, 539, 697
DpnII	GATC	3 cut(s)	189, 537, 695
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	635
Eco105I	TACGTA	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	620
Eco53kI	GAGCTC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	676
EcoICRI	GAGCTC	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	168, 507
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	2 cut(s)	190, 383
FaiI	YATR	8 cut(s)	66, 188, 329, 331, 381, 500, 518, 654
FaqI	GGGAC	2 cut(s)	544, 608
FatI	CATG	2 cut(s)	186, 379
FauNDI	CATATG	1 cut(s)	329
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	637
FspBI	CTAG	2 cut(s)	549, 681
GlaI	GCGC	1 cut(s)	424
GsaI	CCCAGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	174, 512
HapII	CCGG	1 cut(s)	658
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	190, 383
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	658
HphI	GGTGA	2 cut(s)	259, 497
Hpy166II	GTNNAC	2 cut(s)	37, 505
Hpy188I	TCNGA	4 cut(s)	290, 620, 639, 695
Hpy188III	TCNNGA	2 cut(s)	38, 407
Hpy8I	GTNNAC	2 cut(s)	37, 505
HpyAV	CCTTC	4 cut(s)	17, 52, 185, 700
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	7 cut(s)	103, 165, 324, 333, 434, 641, 686
HpyF3I	CTNAG	3 cut(s)	132, 223, 319
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	190, 383
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	189, 537, 695
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	5 cut(s)	94, 291, 409, 434, 632
MaeI	CTAG	2 cut(s)	549, 681
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	4 cut(s)	137, 230, 247, 279
MalI	GATC	3 cut(s)	191, 539, 697
MboI	GATC	3 cut(s)	189, 537, 695
MboII	GAAGA	4 cut(s)	32, 53, 184, 449
MhlI	GDGCHC	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	1 cut(s)	163
MluNI	TGGCCA	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	7 cut(s)	25, 96, 264, 267, 317, 377, 383
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	512
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	2 cut(s)	170, 509
MvaI	CCWGG	2 cut(s)	170, 509
MwoI	GCNNNNNNNGC	7 cut(s)	103, 165, 324, 333, 434, 641, 686
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	3 cut(s)	189, 537, 695
NlaIII	CATG	2 cut(s)	190, 383
NlaIV	GGNNCC	3 cut(s)	84, 391, 471
NmuCI	GTSAC	4 cut(s)	137, 230, 247, 279
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	219
PflFI	GACNNNGTC	1 cut(s)	587
PflMI	CCANNNNNTGG	1 cut(s)	629
PinAI	ACCGGT	1 cut(s)	657
Ppu21I	YACGTR	1 cut(s)	664
PshBI	ATTAAT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	168, 507
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	168, 507
PspN4I	GGNNCC	3 cut(s)	84, 391, 471
PspPI	GGNCC	2 cut(s)	172, 620
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	2 cut(s)	662, 666
RsaNI	GTAC	2 cut(s)	661, 665
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	189, 537, 695
Sau96I	GGNCC	2 cut(s)	172, 620
ScrFI	CCNGG	2 cut(s)	170, 509
SduI	GDGCHC	1 cut(s)	637
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	384
SnaBI	TACGTA	1 cut(s)	664
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	3 cut(s)	228, 245, 333
SspMI	CTAG	2 cut(s)	549, 681
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	168, 507
TaiI	ACGT	1 cut(s)	666
TasI	AATT	1 cut(s)	163
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	3 cut(s)	140, 288, 608
TseFI	GTSAC	4 cut(s)	137, 230, 247, 279
Tsp45I	GTSAC	4 cut(s)	137, 230, 247, 279
TspDTI	ATGAA	3 cut(s)	184, 374, 616
TspRI	CASTG	3 cut(s)	140, 288, 608
Tth111I	GACNNNGTC	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	620
VspI	ATTAAT	1 cut(s)	162
XspI	CTAG	2 cut(s)	549, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.