Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025786.1

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 551

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025786.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgcttaggaggcatatgcggcgtagggttagtgaaagctttgatgaagcattaccacctcacgcatggaggtggtgccaactcgtattctccggaacagatgctaagagaagcgcacgtgactcccatgtgcctgtattggttccattaccaatagggtttgctgtgtttatggttcacctggccaccatacctattactgggactgggatcaactctgctaggagttttgctgctgctgtaatctacaacaatgacaaagtctgggacgaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

92

Amino Acids

10.4

Weight (kDa)

9.76

Isoelectric Point (pI)

63.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	92
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
AlwI	GGATC	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	233, 236
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	220, 223
BciT130I	CCWGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	3 cut(s)	20, 234, 237
BlsI	GCNGC	3 cut(s)	21, 235, 238
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	77, 144
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	2 cut(s)	210, 216
BmsI	GCATC	1 cut(s)	91
BmuI	ACTGGG	2 cut(s)	210, 216
Bpu10I	CCTNAGC	1 cut(s)	5
BsaAI	YACGTR	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	205, 211
BseAI	TCCGGA	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	205, 211
BseXI	GCAGC	2 cut(s)	220, 223
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	185
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	185
BspEI	TCCGGA	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	77, 144
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	205, 211
BssMI	GATC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	5, 105
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 19
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	220, 223
BsuRI	GGCC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	66, 128
CviJI	RGCY	2 cut(s)	39, 185
CviKI_1	RGCY	2 cut(s)	39, 185
DdeI	CTNAG	2 cut(s)	5, 105
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	69, 131
FaiI	YATR	6 cut(s)	15, 17, 67, 129, 173, 191
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	65, 127
FauNDI	CATATG	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	20, 234, 237
Fsp4HI	GCNGC	3 cut(s)	20, 234, 237
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	3 cut(s)	20, 234, 237
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	69, 131
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 19
HpyF3I	CTNAG	2 cut(s)	5, 105
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	69, 131
HspAI	GCGC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	92
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	106, 147, 167, 186, 192, 194, 250
Lsp1109I	GCAGC	2 cut(s)	220, 223
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	3, 63, 69
Mox20I	TGGCCA	1 cut(s)	185
MroI	TCCGGA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	70
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	10, 19
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	69, 131
NlaIV	GGNNCC	2 cut(s)	77, 144
NmuCI	GTSAC	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	21, 235, 238
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	77, 144
PsyI	GACNNNGTC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	70
SatI	GCNGC	3 cut(s)	20, 234, 237
Sau3AI	GATC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	6 cut(s)	41, 61, 74, 121, 183, 196
SfaNI	GCATC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	70
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	60
Tth111I	GACNNNGTC	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.