Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024796.1

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 504

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024796.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 230 bp

atgaagcattactacctcacgcatggaggtggtgccaactcggttgctcctgattattccaaaggcgctgctttgggagctgaaatagttggcacttttcttctggtctacaggtttgctgtgtttatggttcacccggccaccatacctattactgggactgggatcaactctgctaggagttttgctgctgctgtaatctacaacaatgacaaagtctgggacgccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

76

Amino Acids

8.08

Weight (kDa)

8.09

Isoelectric Point (pI)

14.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	155
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	68, 188, 191
AspLEI	GCGC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	32
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	55, 175, 178
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	3 cut(s)	69, 189, 192
BlsI	GCNGC	3 cut(s)	70, 190, 193
Bme1390I	CCNGG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	2 cut(s)	165, 171
BmuI	ACTGGG	2 cut(s)	165, 171
BpuMI	CCSGG	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	160, 166
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	160, 166
BseXI	GCAGC	3 cut(s)	55, 175, 178
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	160, 166
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	3 cut(s)	55, 175, 178
BsuRI	GGCC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	68
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	2 cut(s)	80, 140
CviKI_1	RGCY	2 cut(s)	80, 140
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	138
FaeI	CATG	1 cut(s)	26
FaiI	YATR	3 cut(s)	24, 128, 146
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	69, 189, 192
Fsp4HI	GCNGC	3 cut(s)	69, 189, 192
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	69, 189, 192
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	2 cut(s)	109, 133
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	2 cut(s)	109, 133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	52, 77
LpnPI	CCDG	7 cut(s)	63, 89, 97, 141, 147, 150, 205
Lsp1109I	GCAGC	3 cut(s)	55, 175, 178
MaeI	CTAG	1 cut(s)	177
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	92
MnlI	CCTC	2 cut(s)	20, 26
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	34
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	70, 190, 193
PspN4I	GGNNCC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	27
SatI	GCNGC	3 cut(s)	69, 189, 192
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	5 cut(s)	18, 31, 82, 116, 151
SfcI	CTRYAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	27
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	135
TseI	GCWGC	3 cut(s)	68, 188, 191
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.