Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003977

Physical Location & Seq

Genomic Coordinates Forward (+)

17259552 .. 17261130

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G166400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCCAAAGAAGTGAGTGAAGAGGGACAAGCCCACCACCATGGGAAGGACTATGTGGACCCACCACCAGCTCCTCTCATCGACAGCGATGAGCTCAAGCGGTGGTCCTTCTACAGAGCCCTCATAGCCGAGTTCATAGCCACCCTGCTCTTCCTCTACATCACCGTATCCACTGTCATAGGCAACAAGGTCCAGAGCGGGCCTTGCGATGGCGTTGGCCTTCTGGGTATTGCATGGGCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGTCACATTAACCCAGCTGTGACTTTCGGGCTTTTCTTGGCTCGCAAGGTCTCGTTGATCAGAGCTGTGGCTTACATCGTGGCCCAGAGCTTAGGAGCCATTGTTGGTGTTGGGCTGGTCAAGGCCTTCCAGAAACACAACTACAACTCACAGGGTGGTGGAGCCAACACGGTGGCTCCTGGCTACAGCAAGGGCACAGCTTTGGGTGCTGAGATTATTGGCACCTTTGTTCTCGTCTACACAGTTTTCTCAGCCACTGACCCCAAGAGGAGTGCACGTGACTCCCACGTGCCTGTTTTGGCTCCACTGCCTATTGGGTTTGCTGTGTTCATTGTGCACTTGGCTACAATCCCCATCACTGGTACTGGAATCAACCCAGCAAGGAGCTTTGGTCCTGCTGTGATTTTCAACAACGAAAAAGCCTGGGATGACCAGTGGATCTTCTGGGTTGGGCCATTTGTTGGAGCTCTGGCTGCAGCTGCATACCACCAGTACATTCTCAGAGCAGCAGCTATCAAGGCTTTGGGATCATTCAGAAGCAACCCAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

282

Amino Acids

29.83

Weight (kDa)

9.02

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16850 AT4G35100 AT4G35100
fragaria_vesca	FvH4_1g11250 FvH4_2g15440 FvH4_2g15440
malus_domestica	MD05G1122600.v1.1 MD10G1125200.v1.1
prunus_persica	Prupe.8G166400_v2.0.a1
pyrus_communis	pycom05g11690 pycom10g10760
rosa_chinensis	RchiOBHm_Chr6g0278401 RchiOBHm_Chr6g0303511 RchiOBHm_Chr6g0303531
rosa_laevigata	RLG00000011078 RLG00000013231 RLG00000016822
rosa_multiflora	Rmu_sc0002776.1_g000022 Rmu_sc0003837.1_g000013 Rmu_sc0024796.1_g000001 Rmu_sc0025786.1_g000001 Rmu_ssc0000114.1_g000040
rosa_roxburghii	Rroxscaffold_7G00164680 Rroxscaffold_7G00190380
rosa_rugosa	Rorug02G0073900 Rorug06G0116800 Rorug06G0322000
rosa_samantha	Rh2AG121900 Rh6CG233300 Rh6DG224600
rosa_wichuraiana	Rw0G004180 Rw6G019710 Rw6G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	2 cut(s)	267, 528
AciI	CCGC	3 cut(s)	100, 198, 276
AclWI	GGATC	2 cut(s)	737, 826
AcvI	CACGTG	2 cut(s)	569, 580
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	655, 785
AfiI	CCNNNNNNNGG	4 cut(s)	46, 209, 650, 752
AgsI	TTSAA	1 cut(s)	700
AjnI	CCWGG	2 cut(s)	469, 713
Alw21I	GWGCWC	4 cut(s)	96, 568, 630, 760
Alw26I	GTCTC	1 cut(s)	346
Alw44I	GTGCAC	2 cut(s)	564, 626
AlwI	GGATC	2 cut(s)	737, 826
AlwNI	CAGNNNCTG	1 cut(s)	548
AoxI	GGCC	6 cut(s)	200, 217, 237, 372, 414, 743
ApaLI	GTGCAC	2 cut(s)	564, 626
ApeKI	GCWGC	5 cut(s)	764, 767, 770, 797, 800
AspS9I	GGNCC	8 cut(s)	58, 105, 190, 200, 237, 373, 683, 743
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	4 cut(s)	58, 105, 190, 683
BaeGI	GKGCMC	3 cut(s)	488, 568, 630
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	3 cut(s)	96, 121, 760
BbrPI	CACGTG	2 cut(s)	569, 580
Bbv12I	GWGCWC	4 cut(s)	96, 568, 630, 760
BbvI	GCAGC	5 cut(s)	751, 757, 779, 809, 812
BccI	CCATC	2 cut(s)	203, 653
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	471, 715
BciVI	GTATCC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	346
BfmI	CTRYAG	3 cut(s)	112, 475, 765
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	5 cut(s)	765, 768, 771, 798, 801
BlsI	GCNGC	5 cut(s)	766, 769, 772, 799, 802
Bme1390I	CCNGG	2 cut(s)	471, 715
Bme18I	GGWCC	4 cut(s)	58, 105, 190, 683
BmgT120I	GGNCC	8 cut(s)	58, 105, 190, 200, 237, 373, 683, 743
BmiI	GGNNCC	6 cut(s)	60, 388, 454, 468, 514, 594
BmrFI	CCNGG	2 cut(s)	471, 715
BmsI	GCATC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	80
BsaAI	YACGTR	2 cut(s)	569, 580
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	40, 714
BsaXI	ACNNNNNCTCC	8 cut(s)	378, 408, 451, 481, 553, 583, 667, 697
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 209, 650, 752
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	4 cut(s)	655, 661, 724, 781
BseBI	CCWGG	2 cut(s)	471, 715
BseDI	CCNNGG	2 cut(s)	40, 714
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	4 cut(s)	46, 209, 650, 752
BseMII	CTCAG	3 cut(s)	492, 555, 805
BseNI	ACTGG	4 cut(s)	655, 661, 724, 781
BseRI	GAGGAG	2 cut(s)	63, 574
BseSI	GKGCMC	3 cut(s)	488, 568, 630
BseXI	GCAGC	5 cut(s)	751, 757, 779, 809, 812
BseYI	CCCAGC	2 cut(s)	304, 667
BsgI	GTGCAG	1 cut(s)	256
BshFI	GGCC	6 cut(s)	202, 219, 239, 374, 416, 745
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	4 cut(s)	96, 568, 630, 760
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	4 cut(s)	46, 209, 650, 752
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	6 cut(s)	202, 219, 239, 374, 416, 745
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	6 cut(s)	96, 121, 488, 568, 630, 760
Bsp143I	GATC	4 cut(s)	252, 348, 729, 818
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	3 cut(s)	100, 198, 276
BspANI	GGCC	6 cut(s)	202, 219, 239, 374, 416, 745
BspCNI	CTCAG	3 cut(s)	493, 554, 804
BspLI	GGNNCC	6 cut(s)	60, 388, 454, 468, 514, 594
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	2 cut(s)	737, 826
BspQI	GCTCTTC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	4 cut(s)	655, 661, 724, 781
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	40, 714
BssMI	GATC	4 cut(s)	252, 348, 729, 818
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	471, 715
Bst4CI	ACNGT	4 cut(s)	166, 175, 463, 535
Bst6I	CTCTTC	2 cut(s)	15, 155
BstBAI	YACGTR	2 cut(s)	569, 580
BstC8I	GCNNGC	3 cut(s)	200, 280, 334
BstDEI	CTNAG	4 cut(s)	382, 501, 541, 791
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	724
BstKTI	GATC	4 cut(s)	255, 351, 732, 821
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	4 cut(s)	252, 348, 729, 818
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 204, 279, 497, 764, 770, 809
BstNI	CCWGG	2 cut(s)	471, 715
BstSCI	CCNGG	2 cut(s)	469, 713
BstSFI	CTRYAG	3 cut(s)	112, 475, 765
BstSLI	GKGCMC	3 cut(s)	488, 568, 630
BstV1I	GCAGC	5 cut(s)	751, 757, 779, 809, 812
BstX2I	RGATCY	1 cut(s)	729
BstXI	CCANNNNNNTGG	2 cut(s)	41, 463
BstYI	RGATCY	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	6 cut(s)	202, 219, 239, 374, 416, 745
BtgI	CCRYGG	1 cut(s)	40
BtgZI	GCGATG	2 cut(s)	102, 222
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	5 cut(s)	171, 546, 596, 648, 731
Cac8I	GCNNGC	3 cut(s)	200, 280, 334
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	8 cut(s)	58, 105, 190, 200, 237, 373, 683, 743
Csp6I	GTAC	2 cut(s)	654, 784
CviAII	CATG	3 cut(s)	41, 234, 250
CviQI	GTAC	2 cut(s)	654, 784
DdeI	CTNAG	4 cut(s)	382, 501, 541, 791
DpnI	GATC	4 cut(s)	254, 350, 731, 820
DpnII	GATC	4 cut(s)	252, 348, 729, 818
DraIII	CACNNNGTG	1 cut(s)	446
Eam1104I	CTCTTC	2 cut(s)	15, 155
EarI	CTCTTC	2 cut(s)	15, 155
Ecl136II	GAGCTC	2 cut(s)	94, 758
Eco130I	CCWWGG	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	416
Eco24I	GRGCYC	3 cut(s)	96, 121, 760
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	4 cut(s)	58, 105, 190, 683
Eco53kI	GAGCTC	2 cut(s)	94, 758
Eco72I	CACGTG	2 cut(s)	569, 580
EcoICRI	GAGCTC	2 cut(s)	94, 758
EcoRII	CCWGG	2 cut(s)	469, 713
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	3 cut(s)	96, 121, 760
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	44, 237, 253
FaiI	YATR	8 cut(s)	42, 54, 125, 137, 179, 235, 251, 775
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	40, 233, 249
FauI	CCCGC	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	2 cut(s)	267, 528
Fnu4HI	GCNGC	5 cut(s)	765, 768, 771, 798, 801
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	3 cut(s)	96, 121, 760
Fsp4HI	GCNGC	5 cut(s)	765, 768, 771, 798, 801
GluI	GCNGC	5 cut(s)	765, 768, 771, 798, 801
GsaI	CCCAGC	2 cut(s)	308, 671
HaeIII	GGCC	6 cut(s)	202, 219, 239, 374, 416, 745
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	3 cut(s)	44, 237, 253
HinfI	GANTC	2 cut(s)	572, 660
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	5 cut(s)	58, 268, 529, 566, 628
Hpy188I	TCNGA	3 cut(s)	353, 794, 827
Hpy188III	TCNNGA	2 cut(s)	193, 421
Hpy8I	GTNNAC	5 cut(s)	58, 268, 529, 566, 628
HpyAV	CCTTC	5 cut(s)	40, 118, 230, 250, 427
HpyCH4III	ACNGT	4 cut(s)	166, 175, 463, 535
HpyCH4IV	ACGT	2 cut(s)	568, 579
HpyCH4V	TGCA	6 cut(s)	233, 273, 566, 628, 767, 773
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 204, 279, 497, 764, 770, 809
HpyF3I	CTNAG	4 cut(s)	382, 501, 541, 791
HpySE526I	ACGT	2 cut(s)	568, 579
Hsp92II	CATG	3 cut(s)	44, 237, 253
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	252, 348, 729, 818
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	7 cut(s)	76, 386, 452, 472, 598, 675, 755
Lsp1109I	GCAGC	5 cut(s)	751, 757, 779, 809, 812
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	2 cut(s)	568, 579
MaeIII	GTNAC	3 cut(s)	293, 310, 569
MalI	GATC	4 cut(s)	254, 350, 731, 820
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	4 cut(s)	252, 348, 729, 818
MboII	GAAGA	4 cut(s)	32, 142, 247, 724
MfeI	CAATTG	1 cut(s)	841
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	6 cut(s)	96, 121, 488, 568, 630, 760
MluCI	AATT	1 cut(s)	841
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	6 cut(s)	16, 84, 131, 164, 272, 552
MroNI	GCCGGC	1 cut(s)	278
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	2 cut(s)	308, 770
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	471, 715
MunI	CAATTG	1 cut(s)	841
MvaI	CCWGG	2 cut(s)	471, 715
MwoI	GCNNNNNNNGC	7 cut(s)	125, 204, 279, 497, 764, 770, 809
NaeI	GCCGGC	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	4 cut(s)	252, 348, 729, 818
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	44, 237, 253
NlaIV	GGNNCC	6 cut(s)	60, 388, 454, 468, 514, 594
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	293, 310, 569
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	660
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	5 cut(s)	766, 769, 772, 799, 802
PleI	GAGTC	1 cut(s)	566
PmaCI	CACGTG	2 cut(s)	569, 580
PmlI	CACGTG	2 cut(s)	569, 580
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	2 cut(s)	569, 580
Psp124BI	GAGCTC	2 cut(s)	96, 760
Psp6I	CCWGG	2 cut(s)	469, 713
PspCI	CACGTG	2 cut(s)	569, 580
PspFI	CCCAGC	2 cut(s)	304, 667
PspGI	CCWGG	2 cut(s)	469, 713
PspN4I	GGNNCC	6 cut(s)	60, 388, 454, 468, 514, 594
PspPI	GGNCC	8 cut(s)	58, 105, 190, 200, 237, 373, 683, 743
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	729
PvuII	CAGCTG	2 cut(s)	308, 770
RsaI	GTAC	2 cut(s)	655, 785
RsaNI	GTAC	2 cut(s)	654, 784
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	2 cut(s)	96, 760
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	5 cut(s)	765, 768, 771, 798, 801
Sau3AI	GATC	4 cut(s)	252, 348, 729, 818
Sau96I	GGNCC	8 cut(s)	58, 105, 190, 200, 237, 373, 683, 743
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	471, 715
SduI	GDGCHC	6 cut(s)	96, 121, 488, 568, 630, 760
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	3 cut(s)	112, 475, 765
SinI	GGWCC	4 cut(s)	58, 105, 190, 683
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	841
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	100, 198, 276
SstI	GAGCTC	2 cut(s)	96, 760
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	469, 713
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	4 cut(s)	166, 175, 463, 535
TaiI	ACGT	2 cut(s)	571, 582
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	841
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	660
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	5 cut(s)	178, 553, 603, 655, 731
TseFI	GTSAC	3 cut(s)	293, 310, 569
TseI	GCWGC	5 cut(s)	764, 767, 770, 797, 800
Tsp45I	GTSAC	3 cut(s)	293, 310, 569
TspDTI	ATGAA	2 cut(s)	124, 610
TspRI	CASTG	5 cut(s)	178, 553, 603, 655, 731
Van91I	CCANNNNNTGG	1 cut(s)	752
VneI	GTGCAC	2 cut(s)	564, 626
VpaK11BI	GGWCC	4 cut(s)	58, 105, 190, 683
XmiI	GTMKAC	2 cut(s)	267, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.