Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

7668078 .. 7670495

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAATGGCGATGAGCTTCCTTTCGAGAGTGGTTTCGAGGTTTACGCTAAGGGAACTCATAAGTCAGAGTTTGACTCGAATTTGCTTGATCCTCGTTCTGATCCTATTTGGGATGCTATAAGAGAAGAAGCTAAACTTGAGGCAGAGAAAGAGCCTATTTTGAGTAGCTTCTTGTATGCTGGTATCTTAGCACATGATTGTTTAGAGCAAGCTTTAGGGTTTGTTCTAGCCAACCGTCTCCAAAACCCAACCTTGTTGGCAACACAACTCTTGGATATATTTTATGGTGTTATGATGCATGACAAAGGTATTCAGAGTTCGATTCGCCATGATCTCCAGGCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGGGTTATCATGCGTTACAAGCATATAGGGTTGCGCATAAACTGTGGAATGAAGGGAGGAAACTATTAGCTCTTGCATTGCAAAGCCGAATAAGCGAGGTTTTTGGCATTGACATACATCCAGCGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACATGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGCGATCGCCACCCAAAGATAGGTGAAGGTGCATTGCTTGGAGCTTGTGTGACTATACTTGGTAACATAAGCATAGGTGCTGGAGCAATGGTAGCTGCAGGTTCACTTGTGTTAAAAGACGTTCCTTCGCATAGTGTGGTGGCTGGAAATCCTGCAAAACTGATCAGGGTCATGGAAGAGCAAGACCCGTCTCTAGCAATGAAACACGATGCTACTAAAGAGTTCTTTCGACATGTAGCTGATGGTTACAAAGGGGCACAATCTAACGGACCATCACTTTCAGCAGGAGATACAGAGAAAGGACACACTAACAGCACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

323

Amino Acids

34.53

Weight (kDa)

5.81

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	36 - 140	2.4e-37	Serine acetyltransferase, N-terminal
Hexapep	PF00132	220 - 253	7.9e-07	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	432
Acc36I	ACCTGC	1 cut(s)	737
AciI	CCGC	2 cut(s)	521, 582
AclWI	GGATC	4 cut(s)	83, 95, 350, 558
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	880
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	8 cut(s)	16, 131, 168, 212, 467, 692, 743, 887
AluI	AGCT	8 cut(s)	16, 131, 168, 212, 467, 692, 743, 887
Alw26I	GTCTC	4 cut(s)	242, 572, 607, 843
AlwI	GGATC	4 cut(s)	83, 95, 350, 558
ApeKI	GCWGC	1 cut(s)	743
ApoI	RAATTY	1 cut(s)	79
AsiSI	GCGATCGC	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	1 cut(s)	917
AsuHPI	GGTGA	2 cut(s)	587, 683
AvaII	GGWCC	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	907
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	2 cut(s)	884, 928
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	4 cut(s)	242, 572, 607, 843
BfaI	CTAG	2 cut(s)	227, 842
BfmI	CTRYAG	1 cut(s)	744
BfuAI	ACCTGC	1 cut(s)	737
BisI	GCNGC	2 cut(s)	522, 744
BlsI	GCNGC	2 cut(s)	523, 745
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	917
BmgT120I	GGNCC	1 cut(s)	917
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	3 cut(s)	103, 285, 847
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	3 cut(s)	320, 582, 750
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	572
BsaWI	WCCGGW	1 cut(s)	635
BsaXI	ACNNNNNCTCC	4 cut(s)	681, 711, 723, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	565, 652
Bse3DI	GCAATG	4 cut(s)	473, 680, 741, 852
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	118, 514
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	4 cut(s)	473, 680, 741, 852
BseNI	ACTGG	2 cut(s)	565, 652
BseSI	GKGCMC	1 cut(s)	907
BseXI	GCAGC	1 cut(s)	730
Bsh1285I	CGRYCG	1 cut(s)	655
BsiEI	CGRYCG	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	4 cut(s)	242, 572, 607, 843
BsmBI	CGTCTC	2 cut(s)	242, 843
Bso31I	GGTCTC	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp143I	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
BspACI	CCGC	2 cut(s)	521, 582
BspHI	TCATGA	1 cut(s)	968
BspLI	GGNNCC	1 cut(s)	634
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	737
BspPI	GGATC	4 cut(s)	83, 95, 350, 558
BspQI	GCTCTTC	1 cut(s)	819
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	4 cut(s)	473, 680, 741, 852
BsrI	ACTGG	2 cut(s)	565, 652
BssMI	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	236, 441, 599
Bst6I	CTCTTC	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	48, 187
BstF5I	GGATG	2 cut(s)	118, 514
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	9 cut(s)	91, 103, 334, 352, 358, 553, 609, 655, 813
BstMAI	GTCTC	4 cut(s)	242, 572, 607, 843
BstMBI	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 489, 740
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	884
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	907
BstV1I	GCAGC	1 cut(s)	730
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	118, 514
BveI	ACCTGC	1 cut(s)	737
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	1 cut(s)	968
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	917
CviAII	CATG	9 cut(s)	194, 299, 329, 407, 554, 614, 820, 881, 969
DdeI	CTNAG	2 cut(s)	48, 187
DpnI	GATC	9 cut(s)	90, 102, 333, 351, 357, 552, 608, 654, 812
DpnII	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	917
Eco57I	CTGAAG	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	300
Esp3I	CGTCTC	2 cut(s)	242, 843
FaeI	CATG	9 cut(s)	197, 302, 332, 410, 557, 617, 823, 884, 972
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	9 cut(s)	193, 298, 328, 406, 553, 613, 819, 880, 968
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	522, 744
FokI	GGATG	2 cut(s)	125, 501
Fsp4HI	GCNGC	2 cut(s)	522, 744
FspBI	CTAG	2 cut(s)	227, 842
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	2 cut(s)	522, 744
GsuI	CTGGAG	3 cut(s)	320, 582, 750
HapII	CCGG	1 cut(s)	636
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	9 cut(s)	197, 302, 332, 410, 557, 617, 823, 884, 972
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	74, 322
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	2 cut(s)	587, 683
Hpy166II	GTNNAC	2 cut(s)	43, 752
Hpy188I	TCNGA	4 cut(s)	67, 100, 315, 396
Hpy188III	TCNNGA	4 cut(s)	25, 353, 604, 969
Hpy8I	GTNNAC	2 cut(s)	43, 752
HpyAV	CCTTC	4 cut(s)	391, 443, 668, 783
HpyCH4III	ACNGT	3 cut(s)	236, 441, 599
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	6 cut(s)	298, 473, 478, 680, 746, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 489, 740
HpyF3I	CTNAG	2 cut(s)	48, 187
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	9 cut(s)	197, 302, 332, 410, 557, 617, 823, 884, 972
HspAI	GCGC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	2 cut(s)	689, 731
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	3 cut(s)	103, 285, 847
MaeI	CTAG	2 cut(s)	227, 842
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	5 cut(s)	411, 619, 697, 710, 893
MalI	GATC	9 cut(s)	90, 102, 333, 351, 357, 552, 608, 654, 812
MboI	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
MboII	GAAGA	2 cut(s)	137, 836
MhlI	GDGCHC	1 cut(s)	907
MluCI	AATT	2 cut(s)	79, 528
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	7 cut(s)	31, 102, 133, 447, 487, 529, 623
Mph1103I	ATGCAT	1 cut(s)	300
MseI	TTAA	2 cut(s)	345, 761
MspA1I	CMGCKG	2 cut(s)	521, 584
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	416, 489, 740
NdeII	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
NlaIII	CATG	9 cut(s)	197, 302, 332, 410, 557, 617, 823, 884, 972
NlaIV	GGNNCC	1 cut(s)	634
NmuCI	GTSAC	2 cut(s)	619, 697
NsbI	TGCGCA	1 cut(s)	432
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	1 cut(s)	884
PagI	TCATGA	1 cut(s)	968
PciI	ACATGT	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	819
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	523, 745
Ple19I	CGATCG	1 cut(s)	655
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	880
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	917
PsrI	GAACNNNNNNTAC	2 cut(s)	301, 333
PstI	CTGCAG	1 cut(s)	748
PvuI	CGATCG	1 cut(s)	655
RgaI	GCGATCGC	1 cut(s)	655
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	2 cut(s)	345, 761
SatI	GCNGC	2 cut(s)	522, 744
Sau3AI	GATC	9 cut(s)	88, 100, 331, 349, 355, 550, 606, 652, 810
Sau96I	GGNCC	1 cut(s)	917
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	907
SfaAI	GCGATCGC	1 cut(s)	655
SfaNI	GCATC	3 cut(s)	103, 285, 847
SfcI	CTRYAG	1 cut(s)	744
SgfI	GCGATCGC	1 cut(s)	655
SinI	GGWCC	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	79, 528
SsiI	CCGC	2 cut(s)	521, 582
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	2 cut(s)	227, 842
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	236, 441, 599
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	6 cut(s)	24, 36, 77, 320, 605, 877
TasI	AATT	2 cut(s)	79, 528
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	345, 761
Tru9I	TTAA	2 cut(s)	345, 761
TseFI	GTSAC	2 cut(s)	619, 697
TseI	GCWGC	1 cut(s)	743
Tsp45I	GTSAC	2 cut(s)	619, 697
TspDTI	ATGAA	3 cut(s)	17, 462, 863
TspGWI	ACGGA	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	917
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	884
XspI	CTAG	2 cut(s)	227, 842
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.