Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

10424089 .. 10427195

Gene Structure 3107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG118700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCACTGCCCAGAATGCTATCGGAGCGTTTGTCTTTGAGGGAGGAAGAGGCCGAGGAGGAGGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACCGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTGGACGTGCAGGCGTTTAAAGAACGCGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTACTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGCGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCAAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGGTGGAAACATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

326

Amino Acids

35.88

Weight (kDa)

5.53

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	75 - 178	9.3e-39	Serine acetyltransferase, N-terminal
Hexapep	PF00132	259 - 292	2.7e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	946
AccII	CGCG	2 cut(s)	128, 471
AciI	CCGC	2 cut(s)	123, 126
AclWI	GGATC	3 cut(s)	467, 675, 951
AfaI	GTAC	3 cut(s)	131, 158, 676
AfiI	CCNNNNNNNGG	3 cut(s)	132, 226, 785
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	642
AhdI	GACNNNNNGTC	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	451
AleI	CACNNNNGTG	1 cut(s)	898
AluBI	AGCT	6 cut(s)	24, 285, 385, 479, 548, 860
AluI	AGCT	6 cut(s)	24, 285, 385, 479, 548, 860
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	1 cut(s)	417
Alw44I	GTGCAC	1 cut(s)	795
AlwI	GGATC	3 cut(s)	467, 675, 951
Ama87I	CYCGRG	2 cut(s)	101, 179
AoxI	GGCC	4 cut(s)	3, 78, 246, 582
ApaLI	GTGCAC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	860
AsiGI	ACCGGT	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	310
AsuC2I	CCSGG	3 cut(s)	102, 103, 191
AsuHPI	GGTGA	3 cut(s)	623, 779, 800
AvaI	CYCGRG	2 cut(s)	101, 179
BaeGI	GKGCMC	1 cut(s)	799
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	847
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BcnI	CCSGG	3 cut(s)	102, 103, 191
BcoDI	GTCTC	1 cut(s)	417
BisI	GCNGC	2 cut(s)	126, 861
BlsI	GCNGC	2 cut(s)	127, 862
Bme1390I	CCNGG	3 cut(s)	102, 103, 191
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmeT110I	CYCGRG	2 cut(s)	101, 179
BmgBI	CACGTC	1 cut(s)	451
BmiI	GGNNCC	4 cut(s)	99, 270, 808, 850
BmrFI	CCNGG	3 cut(s)	102, 103, 191
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	3 cut(s)	309, 402, 717
BmuI	ACTGGG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	3 cut(s)	102, 103, 191
BsaJI	CCNNGG	3 cut(s)	81, 101, 585
BsaWI	WCCGGW	2 cut(s)	132, 151
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 89, 119, 642, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 226, 785
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	757, 810
BseDI	CCNNGG	3 cut(s)	81, 101, 585
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	3 cut(s)	132, 226, 785
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	757, 810
BseRI	GAGGAG	5 cut(s)	98, 101, 104, 107, 110
BseSI	GKGCMC	1 cut(s)	799
BseXI	GCAGC	1 cut(s)	847
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	2 cut(s)	128, 471
BshFI	GGCC	4 cut(s)	5, 80, 248, 584
BshTI	ACCGGT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	2 cut(s)	101, 179
BsiSI	CCGG	4 cut(s)	102, 133, 152, 191
BslFI	GGGAC	2 cut(s)	242, 872
BslI	CCNNNNNNNGG	3 cut(s)	132, 226, 785
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	242, 872
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	5, 80, 248, 584
BsoBI	CYCGRG	2 cut(s)	101, 179
Bsp1286I	GDGCHC	2 cut(s)	102, 799
Bsp143I	GATC	4 cut(s)	434, 472, 667, 956
BspACI	CCGC	2 cut(s)	123, 126
BspANI	GGCC	4 cut(s)	5, 80, 248, 584
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	128, 471
BspLI	GGNNCC	4 cut(s)	99, 270, 808, 850
BspPI	GGATC	3 cut(s)	467, 675, 951
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	757, 810
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	81, 101, 585
BssMI	GATC	4 cut(s)	434, 472, 667, 956
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	5 cut(s)	209, 494, 507, 558, 773
Bst6I	CTCTTC	2 cut(s)	69, 237
BstC8I	GCNNGC	4 cut(s)	7, 298, 327, 456
BstDEI	CTNAG	1 cut(s)	381
BstEII	GGTNACC	2 cut(s)	518, 767
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	2 cut(s)	128, 471
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	437, 475, 670, 959
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	4 cut(s)	434, 472, 667, 956
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 52, 451, 606, 857
BstPI	GGTNACC	2 cut(s)	518, 767
BstSCI	CCNGG	3 cut(s)	100, 101, 189
BstSLI	GKGCMC	1 cut(s)	799
BstUI	CGCG	2 cut(s)	128, 471
BstV1I	GCAGC	1 cut(s)	847
BstX2I	RGATCY	1 cut(s)	956
BstXI	CCANNNNNNTGG	1 cut(s)	900
BstYI	RGATCY	1 cut(s)	956
BsuRI	GGCC	4 cut(s)	5, 80, 248, 584
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	32, 554, 817
Cac8I	GCNNGC	4 cut(s)	7, 298, 327, 456
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	132
Cfr9I	CCCGGG	1 cut(s)	101
CseI	GACGC	2 cut(s)	239, 579
Csp6I	GTAC	3 cut(s)	130, 157, 675
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	8 cut(s)	311, 416, 524, 671, 853, 908, 971, 978
CviQI	GTAC	3 cut(s)	130, 157, 675
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	4 cut(s)	436, 474, 669, 958
DpnII	GATC	4 cut(s)	434, 472, 667, 956
DraI	TTTAAA	1 cut(s)	463
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	69, 237
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	2 cut(s)	69, 237
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	102
Eco88I	CYCGRG	2 cut(s)	101, 179
Eco91I	GGTNACC	2 cut(s)	518, 767
EcoO65I	GGTNACC	2 cut(s)	518, 767
EcoT14I	CCWWGG	1 cut(s)	585
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	8 cut(s)	314, 419, 527, 674, 856, 911, 974, 981
FaqI	GGGAC	2 cut(s)	242, 872
FatI	CATG	8 cut(s)	310, 415, 523, 670, 852, 907, 970, 977
FblI	GTMKAC	1 cut(s)	946
Fnu4HI	GCNGC	2 cut(s)	126, 861
FokI	GGATG	1 cut(s)	762
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	126, 861
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	2 cut(s)	126, 861
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	4 cut(s)	5, 80, 248, 584
HapII	CCGG	4 cut(s)	102, 133, 152, 191
HgaI	GACGC	2 cut(s)	239, 579
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	8 cut(s)	314, 419, 527, 674, 856, 911, 974, 981
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	5 cut(s)	113, 119, 169, 182, 562
HpaII	CCGG	4 cut(s)	102, 133, 152, 191
HphI	GGTGA	3 cut(s)	623, 779, 800
Hpy166II	GTNNAC	4 cut(s)	157, 625, 797, 947
Hpy188I	TCNGA	5 cut(s)	52, 118, 174, 187, 214
Hpy8I	GTNNAC	4 cut(s)	157, 625, 797, 947
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	136, 259, 785, 970
HpyCH4III	ACNGT	5 cut(s)	209, 494, 507, 558, 773
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	8 cut(s)	347, 358, 415, 454, 532, 730, 797, 815
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 52, 451, 606, 857
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	8 cut(s)	314, 419, 527, 674, 856, 911, 974, 981
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	434, 472, 667, 956
LmnI	GCTCC	5 cut(s)	52, 97, 268, 806, 848
Lsp1109I	GCAGC	1 cut(s)	847
LweI	GCATC	3 cut(s)	309, 402, 717
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	10, 518, 736, 767
MalI	GATC	4 cut(s)	436, 474, 669, 958
MboI	GATC	4 cut(s)	434, 472, 667, 956
MboII	GAAGA	2 cut(s)	86, 254
MflI	RGATCY	1 cut(s)	956
MhlI	GDGCHC	2 cut(s)	102, 799
MluCI	AATT	3 cut(s)	273, 645, 762
MlyI	GAGTC	4 cut(s)	107, 128, 191, 571
MmeI	TCCRAC	4 cut(s)	117, 210, 234, 645
Mph1103I	ATGCAT	1 cut(s)	417
MseI	TTAA	3 cut(s)	462, 879, 966
MslI	CAYNNNNRTG	1 cut(s)	898
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	4 cut(s)	102, 133, 152, 191
MspR9I	CCNGG	3 cut(s)	102, 103, 191
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	2 cut(s)	128, 471
MwoI	GCNNNNNNNGC	5 cut(s)	43, 52, 451, 606, 857
NciI	CCSGG	3 cut(s)	102, 103, 191
NdeII	GATC	4 cut(s)	434, 472, 667, 956
NlaIII	CATG	8 cut(s)	314, 419, 527, 674, 856, 911, 974, 981
NlaIV	GGNNCC	4 cut(s)	99, 270, 808, 850
NmeAIII	GCCGAG	3 cut(s)	106, 421, 626
NmuCI	GTSAC	2 cut(s)	10, 767
NsiI	ATGCAT	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	127, 862
PleI	GAGTC	4 cut(s)	107, 127, 190, 570
PpsI	GAGTC	4 cut(s)	107, 127, 190, 570
PspEI	GGTNACC	2 cut(s)	518, 767
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	99, 270, 808, 850
PsuI	RGATCY	1 cut(s)	956
PsyI	GACNNNGTC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	3 cut(s)	131, 158, 676
RsaNI	GTAC	3 cut(s)	130, 157, 675
RseI	CAYNNNNRTG	1 cut(s)	898
SaqAI	TTAA	3 cut(s)	462, 879, 966
SatI	GCNGC	2 cut(s)	126, 861
Sau3AI	GATC	4 cut(s)	434, 472, 667, 956
SchI	GAGTC	4 cut(s)	107, 128, 191, 571
ScrFI	CCNGG	3 cut(s)	102, 103, 191
SduI	GDGCHC	2 cut(s)	102, 799
SfaNI	GCATC	3 cut(s)	309, 402, 717
SmaI	CCCGGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	898
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	273, 645, 762
SsiI	CCGC	2 cut(s)	123, 126
StyD4I	CCNGG	3 cut(s)	100, 101, 189
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	5 cut(s)	209, 494, 507, 558, 773
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	111, 541
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	273, 645, 762
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	462, 879, 966
Tru9I	TTAA	3 cut(s)	462, 879, 966
TscAI	CASTG	3 cut(s)	39, 561, 817
TseFI	GTSAC	2 cut(s)	10, 767
TseI	GCWGC	1 cut(s)	860
Tsp45I	GTSAC	2 cut(s)	10, 767
TspDTI	ATGAA	2 cut(s)	711, 952
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	3 cut(s)	39, 561, 817
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	795
XmaI	CCCGGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	946
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.