Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8255597.1

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 328

Gene Structure 328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8255597.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 262 bp

atggcctgcgtgaccgacgagagctgggtcgcgctgcccagaatgctatcggagcgtttgtctttgagggaggaagaggccgaggaggaggagcccgggtttttcgactccgagtccgccgcgtacaggttggagaaggtttttccggtgtacgcattggggattcagaaacccgagtccgacccggttgttgtggctgacagttcggacgacccgatttgggacgctgtcagggaagaggccaagttggaggtagaaactt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

87

Amino Acids

9.83

Weight (kDa)

4.07

Isoelectric Point (pI)

64.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	32, 122
AciI	CCGC	2 cut(s)	117, 120
AfaI	GTAC	2 cut(s)	125, 152
AfiI	CCNNNNNNNGG	2 cut(s)	126, 220
AhdI	GACNNNNNGTC	1 cut(s)	112
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Ama87I	CYCGRG	2 cut(s)	95, 173
AoxI	GGCC	3 cut(s)	3, 78, 240
ApeKI	GCWGC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	3 cut(s)	96, 97, 185
AvaI	CYCGRG	2 cut(s)	95, 173
BanII	GRGCYC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	21
BcnI	CCSGG	3 cut(s)	96, 97, 185
BisI	GCNGC	2 cut(s)	35, 120
BlsI	GCNGC	2 cut(s)	36, 121
Bme1390I	CCNGG	3 cut(s)	96, 97, 185
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	95, 173
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	3 cut(s)	96, 97, 185
BpuMI	CCSGG	3 cut(s)	96, 97, 185
BsaJI	CCNNGG	2 cut(s)	81, 95
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 220
BseDI	CCNNGG	2 cut(s)	81, 95
BseLI	CCNNNNNNNGG	2 cut(s)	126, 220
BseRI	GAGGAG	3 cut(s)	98, 101, 104
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	32, 122
BshFI	GGCC	3 cut(s)	5, 80, 242
BsiHKCI	CYCGRG	2 cut(s)	95, 173
BsiSI	CCGG	3 cut(s)	96, 146, 185
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	126, 220
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	3 cut(s)	5, 80, 242
BsoBI	CYCGRG	2 cut(s)	95, 173
Bsp1286I	GDGCHC	1 cut(s)	96
BspACI	CCGC	2 cut(s)	117, 120
BspANI	GGCC	3 cut(s)	5, 80, 242
BspFNI	CGCG	2 cut(s)	32, 122
BspLI	GGNNCC	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	81, 95
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	2 cut(s)	69, 231
BstC8I	GCNNGC	1 cut(s)	7
BstFNI	CGCG	2 cut(s)	32, 122
BstHHI	GCGC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 52
BstSCI	CCNGG	3 cut(s)	94, 95, 183
BstUI	CGCG	2 cut(s)	32, 122
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	5, 80, 242
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	34
Cfr9I	CCCGGG	1 cut(s)	95
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	124, 151
CviJI	RGCY	6 cut(s)	5, 24, 80, 94, 197, 242
CviKI_1	RGCY	6 cut(s)	5, 24, 80, 94, 197, 242
CviQI	GTAC	2 cut(s)	124, 151
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	69, 231
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	69, 231
EciI	GGCGGA	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	95, 173
EcoT38I	GRGCYC	1 cut(s)	96
FaqI	GGGAC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	35, 120
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	35, 120
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	35, 120
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	3 cut(s)	5, 80, 242
HapII	CCGG	3 cut(s)	96, 146, 185
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	4 cut(s)	107, 113, 163, 176
HpaII	CCGG	3 cut(s)	96, 146, 185
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	5 cut(s)	52, 112, 168, 181, 208
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 52
HspAI	GCGC	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	52, 91
LpnPI	CCDG	8 cut(s)	10, 19, 52, 109, 112, 159, 198, 217
Lsp1109I	GCAGC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	86, 248
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	3 cut(s)	101, 122, 185
MmeI	TCCRAC	3 cut(s)	111, 204, 228
MnlI	CCTC	8 cut(s)	60, 64, 70, 76, 79, 82, 232, 244
MspI	CCGG	3 cut(s)	96, 146, 185
MspR9I	CCNGG	3 cut(s)	96, 97, 185
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	2 cut(s)	32, 122
MwoI	GCNNNNNNNGC	2 cut(s)	43, 52
NciI	CCSGG	3 cut(s)	96, 97, 185
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	36, 121
PleI	GAGTC	3 cut(s)	101, 121, 184
PpsI	GAGTC	3 cut(s)	101, 121, 184
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	2 cut(s)	125, 152
RsaNI	GTAC	2 cut(s)	124, 151
SatI	GCNGC	2 cut(s)	35, 120
SchI	GAGTC	3 cut(s)	101, 122, 185
ScrFI	CCNGG	3 cut(s)	96, 97, 185
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	4 cut(s)	26, 131, 141, 255
SmaI	CCCGGG	1 cut(s)	97
SsiI	CCGC	2 cut(s)	117, 120
StyD4I	CCNGG	3 cut(s)	94, 95, 183
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	29
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	10
TspMI	CCCGGG	1 cut(s)	95
Tth111I	GACNNNGTC	1 cut(s)	227
XmaI	CCCGGG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.