Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

8913649 .. 8917070

Gene Structure 3422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G008910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCGCTGCCCAGAATGCTATCGGAGCGTTTGTCTTTGAGGGAGGAAGAGGCCGAGGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACAGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTAAGTAGCTTCTTGTACGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTAGACGTGCAGGCGTTTAAAGAACGTGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTACTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGCGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCAAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTCAAGTTCAGAGATGCAAGGTCTGCTGGAGGGCAGACTTCAGAAAAAAGTGACGCGAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

354

Amino Acids

38.41

Weight (kDa)

5.09

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	73 - 176	1.1e-38	Serine acetyltransferase, N-terminal
Hexapep	PF00132	257 - 290	3.1e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	4 cut(s)	32, 122, 290, 1055
AciI	CCGC	2 cut(s)	117, 120
AclWI	GGATC	3 cut(s)	461, 669, 938
AcsI	RAATTY	1 cut(s)	980
AcuI	CTGAAG	1 cut(s)	1023
AfaI	GTAC	4 cut(s)	125, 152, 287, 670
AfiI	CCNNNNNNNGG	3 cut(s)	126, 220, 779
AgsI	TTSAA	2 cut(s)	636, 989
AhdI	GACNNNNNGTC	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	445
AluBI	AGCT	7 cut(s)	24, 279, 379, 473, 542, 854, 998
AluI	AGCT	7 cut(s)	24, 279, 379, 473, 542, 854, 998
Alw21I	GWGCWC	2 cut(s)	793, 1061
Alw26I	GTCTC	1 cut(s)	411
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	3 cut(s)	461, 669, 938
Ama87I	CYCGRG	2 cut(s)	95, 173
AoxI	GGCC	4 cut(s)	3, 78, 240, 576
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	2 cut(s)	34, 854
ApoI	RAATTY	1 cut(s)	980
AspLEI	GCGC	2 cut(s)	34, 304
AsuC2I	CCSGG	3 cut(s)	96, 97, 185
AsuHPI	GGTGA	3 cut(s)	617, 773, 794
AvaI	CYCGRG	2 cut(s)	95, 173
BaeGI	GKGCMC	1 cut(s)	793
BaeI	ACNNNNGTAYC	2 cut(s)	660, 693
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	793, 1061
BbvI	GCAGC	2 cut(s)	21, 841
BccI	CCATC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BcnI	CCSGG	3 cut(s)	96, 97, 185
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	3 cut(s)	35, 120, 855
BlsI	GCNGC	3 cut(s)	36, 121, 856
Bme1390I	CCNGG	3 cut(s)	96, 97, 185
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	95, 173
BmgBI	CACGTC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	93, 264, 802, 844
BmrFI	CCNGG	3 cut(s)	96, 97, 185
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	5 cut(s)	303, 396, 711, 958, 1003
BmuI	ACTGGG	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	1047
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	96, 97, 185
BsaJI	CCNNGG	3 cut(s)	81, 95, 579
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 83, 113, 636, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 220, 779
Bse1I	ACTGG	2 cut(s)	751, 804
BseDI	CCNNGG	3 cut(s)	81, 95, 579
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	3 cut(s)	126, 220, 779
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	751, 804
BseRI	GAGGAG	3 cut(s)	98, 101, 104
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	2 cut(s)	21, 841
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	4 cut(s)	32, 122, 290, 1055
BshFI	GGCC	4 cut(s)	5, 80, 242, 578
BsiHKAI	GWGCWC	2 cut(s)	793, 1061
BsiHKCI	CYCGRG	2 cut(s)	95, 173
BsiSI	CCGG	3 cut(s)	96, 146, 185
BslFI	GGGAC	2 cut(s)	236, 866
BslI	CCNNNNNNNGG	3 cut(s)	126, 220, 779
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	236, 866
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	5, 80, 242, 578
BsoBI	CYCGRG	2 cut(s)	95, 173
Bsp1286I	GDGCHC	3 cut(s)	96, 793, 1061
Bsp143I	GATC	4 cut(s)	428, 466, 661, 943
BspACI	CCGC	2 cut(s)	117, 120
BspANI	GGCC	4 cut(s)	5, 80, 242, 578
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	4 cut(s)	32, 122, 290, 1055
BspLI	GGNNCC	4 cut(s)	93, 264, 802, 844
BspPI	GGATC	3 cut(s)	461, 669, 938
BsrI	ACTGG	2 cut(s)	751, 804
BssECI	CCNNGG	3 cut(s)	81, 95, 579
BssMI	GATC	4 cut(s)	428, 466, 661, 943
BssT1I	CCWWGG	1 cut(s)	579
Bst4CI	ACNGT	5 cut(s)	203, 488, 501, 552, 767
Bst6I	CTCTTC	2 cut(s)	69, 231
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstC8I	GCNNGC	5 cut(s)	7, 292, 321, 450, 1057
BstDEI	CTNAG	1 cut(s)	375
BstEII	GGTNACC	2 cut(s)	512, 761
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	4 cut(s)	32, 122, 290, 1055
BstHHI	GCGC	2 cut(s)	34, 304
BstKTI	GATC	4 cut(s)	431, 469, 664, 946
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	4 cut(s)	428, 466, 661, 943
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 52, 445, 600, 851, 1022
BstPI	GGTNACC	2 cut(s)	512, 761
BstSCI	CCNGG	3 cut(s)	94, 95, 183
BstSLI	GKGCMC	1 cut(s)	793
BstUI	CGCG	4 cut(s)	32, 122, 290, 1055
BstV1I	GCAGC	2 cut(s)	21, 841
BstX2I	RGATCY	1 cut(s)	943
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	4 cut(s)	5, 80, 242, 578
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	769
BtsIMutI	CAGTG	2 cut(s)	548, 811
Cac8I	GCNNGC	5 cut(s)	7, 292, 321, 450, 1057
CfoI	GCGC	2 cut(s)	34, 304
Cfr9I	CCCGGG	1 cut(s)	95
CseI	GACGC	2 cut(s)	233, 573
Csp6I	GTAC	4 cut(s)	124, 151, 286, 669
CviAII	CATG	8 cut(s)	305, 410, 518, 665, 847, 895, 958, 965
CviQI	GTAC	4 cut(s)	124, 151, 286, 669
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	4 cut(s)	430, 468, 663, 945
DpnII	GATC	4 cut(s)	428, 466, 661, 943
DraI	TTTAAA	1 cut(s)	457
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	69, 231
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	69, 231
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	1023
Eco88I	CYCGRG	2 cut(s)	95, 173
Eco91I	GGTNACC	2 cut(s)	512, 761
EcoO65I	GGTNACC	2 cut(s)	512, 761
EcoT14I	CCWWGG	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	8 cut(s)	308, 413, 521, 668, 850, 898, 961, 968
FaqI	GGGAC	2 cut(s)	236, 866
FatI	CATG	8 cut(s)	304, 409, 517, 664, 846, 894, 957, 964
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	3 cut(s)	35, 120, 855
FokI	GGATG	1 cut(s)	756
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	35, 120, 855
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	33, 303
GluI	GCNGC	3 cut(s)	35, 120, 855
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	1047
HaeIII	GGCC	4 cut(s)	5, 80, 242, 578
HapII	CCGG	3 cut(s)	96, 146, 185
HgaI	GACGC	2 cut(s)	233, 573
HhaI	GCGC	2 cut(s)	34, 304
Hin1II	CATG	8 cut(s)	308, 413, 521, 668, 850, 898, 961, 968
Hin6I	GCGC	2 cut(s)	32, 302
HinP1I	GCGC	2 cut(s)	32, 302
HinfI	GANTC	5 cut(s)	107, 113, 163, 176, 556
HpaII	CCGG	3 cut(s)	96, 146, 185
HphI	GGTGA	3 cut(s)	617, 773, 794
Hpy166II	GTNNAC	4 cut(s)	151, 619, 791, 934
Hpy188I	TCNGA	7 cut(s)	52, 112, 168, 181, 208, 1010, 1042
Hpy8I	GTNNAC	4 cut(s)	151, 619, 791, 934
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	130, 253, 779, 957
HpyCH4III	ACNGT	5 cut(s)	203, 488, 501, 552, 767
HpyCH4IV	ACGT	2 cut(s)	444, 463
HpyCH4V	TGCA	9 cut(s)	341, 352, 409, 448, 526, 724, 791, 809, 1016
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 52, 445, 600, 851, 1022
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	444, 463
Hsp92II	CATG	8 cut(s)	308, 413, 521, 668, 850, 898, 961, 968
HspAI	GCGC	2 cut(s)	32, 302
Kzo9I	GATC	4 cut(s)	428, 466, 661, 943
LmnI	GCTCC	5 cut(s)	52, 91, 262, 800, 842
Lsp1109I	GCAGC	2 cut(s)	21, 841
LweI	GCATC	5 cut(s)	303, 396, 711, 958, 1003
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	444, 463
MaeIII	GTNAC	5 cut(s)	10, 512, 730, 761, 1049
MalI	GATC	4 cut(s)	430, 468, 663, 945
MboI	GATC	4 cut(s)	428, 466, 661, 943
MboII	GAAGA	2 cut(s)	86, 248
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	3 cut(s)	96, 793, 1061
MluCI	AATT	4 cut(s)	267, 639, 756, 980
MlyI	GAGTC	4 cut(s)	101, 122, 185, 565
MmeI	TCCRAC	4 cut(s)	111, 204, 228, 639
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	4 cut(s)	272, 456, 873, 953
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	3 cut(s)	96, 146, 185
MspR9I	CCNGG	3 cut(s)	96, 97, 185
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	4 cut(s)	32, 122, 290, 1055
MwoI	GCNNNNNNNGC	6 cut(s)	43, 52, 445, 600, 851, 1022
NciI	CCSGG	3 cut(s)	96, 97, 185
NdeII	GATC	4 cut(s)	428, 466, 661, 943
NlaIII	CATG	8 cut(s)	308, 413, 521, 668, 850, 898, 961, 968
NlaIV	GGNNCC	4 cut(s)	93, 264, 802, 844
NmeAIII	GCCGAG	3 cut(s)	106, 415, 620
NmuCI	GTSAC	3 cut(s)	10, 761, 1049
NsiI	ATGCAT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	36, 121, 856
PleI	GAGTC	4 cut(s)	101, 121, 184, 564
PpsI	GAGTC	4 cut(s)	101, 121, 184, 564
PspEI	GGTNACC	2 cut(s)	512, 761
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	93, 264, 802, 844
PsuI	RGATCY	1 cut(s)	943
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	4 cut(s)	125, 152, 287, 670
RsaNI	GTAC	4 cut(s)	124, 151, 286, 669
SaqAI	TTAA	4 cut(s)	272, 456, 873, 953
SatI	GCNGC	3 cut(s)	35, 120, 855
Sau3AI	GATC	4 cut(s)	428, 466, 661, 943
SchI	GAGTC	4 cut(s)	101, 122, 185, 565
ScrFI	CCNGG	3 cut(s)	96, 97, 185
SduI	GDGCHC	3 cut(s)	96, 793, 1061
SfaNI	GCATC	5 cut(s)	303, 396, 711, 958, 1003
SmaI	CCCGGG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	267, 639, 756, 980
SsiI	CCGC	2 cut(s)	117, 120
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	3 cut(s)	94, 95, 183
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	5 cut(s)	203, 488, 501, 552, 767
TaiI	ACGT	2 cut(s)	447, 466
TaqI	TCGA	2 cut(s)	105, 535
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	267, 639, 756, 980
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	4 cut(s)	272, 456, 873, 953
Tru9I	TTAA	4 cut(s)	272, 456, 873, 953
TscAI	CASTG	2 cut(s)	555, 811
TseFI	GTSAC	3 cut(s)	10, 761, 1049
TseI	GCWGC	2 cut(s)	34, 854
Tsp45I	GTSAC	3 cut(s)	10, 761, 1049
TspDTI	ATGAA	3 cut(s)	705, 939, 974
TspMI	CCCGGG	1 cut(s)	95
TspRI	CASTG	2 cut(s)	555, 811
Tth111I	GACNNNGTC	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	789
XapI	RAATTY	1 cut(s)	980
XmaI	CCCGGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.