Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

5773926 .. 5777518

Gene Structure 3593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10540.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCGCTGCCCAAAATGCTTTCTGAGCGTTTGTCGCTGAGGGAGGAAGAGGAGGTGGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACAGGTTGGAAAAGGTTTTTCCAGTGTACGCATTGGGGATTCCGAAACCCGAACCCGACCCGGTTGTTGTCGCTGACAGTTCGGGCGACCCGATTTGGGACGCCGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGAATGTTTAGAGCAGGCGTTGGCGTTTGTTATTGCAAATAGATTGCAAAACGCGACGCTGCTGGCTACTCAGTTGATGGATATATTCTCTGATGTAATGATGCATGACAGAGACATTCAGCGATCTGTTCGGCTAGACGTGCAGGCGTTTAAGGAACGGGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTGTTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGACTCGGGGACGCAAAGTATTGGCCCTGGCTTTACAAAGCCGAGTTAGTGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAACATTGGAGAGGGAGTATTGTTGGATCATGGCACTGGTGTTGTTATTGGTGAAACTGCTGTTATAGGAAACAGAGTTTCACTGATGCAGGGTGTAACTTTGGGGGGAACTGGTAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTGATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCGAGGAGCAATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCATCAAAGGTGATTGGATATGTAGACGAAAAAGATCCTTCACTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAATTTCAGAGATGCAAGATCTTCTGGAGGGCCTGCTCCAGAGAATAGTGATGGGAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

355

Amino Acids

38.34

Weight (kDa)

5.04

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	73 - 176	5.6e-39	Serine acetyltransferase, N-terminal
Hexapep	PF00132	257 - 290	1.2e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	933
AccII	CGCG	3 cut(s)	32, 122, 359
AciI	CCGC	2 cut(s)	117, 120
AclWI	GGATC	4 cut(s)	461, 474, 669, 938
AcsI	RAATTY	1 cut(s)	980
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	125, 152
AfiI	CCNNNNNNNGG	3 cut(s)	126, 220, 779
AgsI	TTSAA	2 cut(s)	636, 989
AhdI	GACNNNNNGTC	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	579
AluBI	AGCT	6 cut(s)	24, 279, 473, 542, 854, 998
AluI	AGCT	6 cut(s)	24, 279, 473, 542, 854, 998
Alw21I	GWGCWC	2 cut(s)	793, 1061
Alw26I	GTCTC	1 cut(s)	411
Alw44I	GTGCAC	1 cut(s)	789
AlwI	GGATC	4 cut(s)	461, 474, 669, 938
Ama87I	CYCGRG	2 cut(s)	95, 558
AoxI	GGCC	4 cut(s)	3, 240, 576, 1031
ApaLI	GTGCAC	1 cut(s)	789
ApeKI	GCWGC	3 cut(s)	34, 364, 854
ApoI	RAATTY	1 cut(s)	980
AspLEI	GCGC	2 cut(s)	34, 304
AspS9I	GGNCC	2 cut(s)	577, 1031
AsuC2I	CCSGG	3 cut(s)	96, 97, 185
AsuHPI	GGTGA	5 cut(s)	617, 698, 773, 794, 931
AvaI	CYCGRG	2 cut(s)	95, 558
BaeGI	GKGCMC	1 cut(s)	793
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	2 cut(s)	793, 1061
BbvCI	CCTCAGC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	21, 351, 841
BccI	CCATC	3 cut(s)	376, 919, 1046
BceAI	ACGGC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	581
BcnI	CCSGG	3 cut(s)	96, 97, 185
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	440
BglII	AGATCT	1 cut(s)	1019
BisI	GCNGC	4 cut(s)	35, 120, 365, 855
BlsI	GCNGC	4 cut(s)	36, 121, 366, 856
Bme1390I	CCNGG	4 cut(s)	96, 97, 185, 581
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	95, 558
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	577, 1031
BmiI	GGNNCC	4 cut(s)	93, 264, 468, 802
BmrFI	CCNGG	4 cut(s)	96, 97, 185, 581
BmsI	GCATC	5 cut(s)	303, 396, 711, 958, 1003
BpmI	CTGGAG	2 cut(s)	1023, 1047
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	3 cut(s)	96, 97, 185
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	95, 579
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 636, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 220, 779
Bse1I	ACTGG	4 cut(s)	146, 676, 751, 804
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	95, 579
BseGI	GGATG	1 cut(s)	769
BseLI	CCNNNNNNNGG	3 cut(s)	126, 220, 779
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	3 cut(s)	42, 56, 389
BseNI	ACTGG	4 cut(s)	146, 676, 751, 804
BseRI	GAGGAG	4 cut(s)	92, 101, 104, 855
BseSI	GKGCMC	1 cut(s)	793
BseXI	GCAGC	3 cut(s)	21, 351, 841
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	3 cut(s)	32, 122, 359
BshFI	GGCC	4 cut(s)	5, 242, 578, 1033
BsiHKAI	GWGCWC	2 cut(s)	793, 1061
BsiHKCI	CYCGRG	2 cut(s)	95, 558
BsiSI	CCGG	2 cut(s)	96, 185
BslFI	GGGAC	3 cut(s)	236, 576, 866
BslI	CCNNNNNNNGG	3 cut(s)	126, 220, 779
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	3 cut(s)	236, 576, 866
BsnI	GGCC	4 cut(s)	5, 242, 578, 1033
BsoBI	CYCGRG	2 cut(s)	95, 558
Bsp1286I	GDGCHC	3 cut(s)	96, 793, 1061
Bsp143I	GATC	5 cut(s)	428, 466, 661, 943, 1019
BspACI	CCGC	2 cut(s)	117, 120
BspANI	GGCC	4 cut(s)	5, 242, 578, 1033
BspCNI	CTCAG	3 cut(s)	43, 57, 388
BspFNI	CGCG	3 cut(s)	32, 122, 359
BspLI	GGNNCC	4 cut(s)	93, 264, 468, 802
BspPI	GGATC	4 cut(s)	461, 474, 669, 938
BsrDI	GCAATG	1 cut(s)	852
BsrI	ACTGG	4 cut(s)	146, 676, 751, 804
BssECI	CCNNGG	2 cut(s)	95, 579
BssMI	GATC	5 cut(s)	428, 466, 661, 943, 1019
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	4 cut(s)	203, 488, 552, 767
Bst6I	CTCTTC	2 cut(s)	69, 231
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	6 cut(s)	7, 292, 321, 369, 450, 1035
BstDEI	CTNAG	3 cut(s)	51, 65, 375
BstEII	GGTNACC	2 cut(s)	512, 761
BstF5I	GGATG	1 cut(s)	769
BstFNI	CGCG	3 cut(s)	32, 122, 359
BstHHI	GCGC	2 cut(s)	34, 304
BstKTI	GATC	5 cut(s)	431, 469, 664, 946, 1022
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	5 cut(s)	428, 466, 661, 943, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 52, 61, 445, 851
BstNI	CCWGG	1 cut(s)	581
BstPI	GGTNACC	2 cut(s)	512, 761
BstSCI	CCNGG	4 cut(s)	94, 95, 183, 579
BstSLI	GKGCMC	1 cut(s)	793
BstUI	CGCG	3 cut(s)	32, 122, 359
BstV1I	GCAGC	3 cut(s)	21, 351, 841
BstX2I	RGATCY	3 cut(s)	466, 943, 1019
BstYI	RGATCY	3 cut(s)	466, 943, 1019
BsuRI	GGCC	4 cut(s)	5, 242, 578, 1033
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	769
BtsIMutI	CAGTG	6 cut(s)	153, 548, 669, 716, 791, 811
Cac8I	GCNNGC	6 cut(s)	7, 292, 321, 369, 450, 1035
CfoI	GCGC	2 cut(s)	34, 304
Cfr13I	GGNCC	2 cut(s)	577, 1031
Cfr9I	CCCGGG	1 cut(s)	95
CseI	GACGC	3 cut(s)	233, 370, 573
Csp6I	GTAC	2 cut(s)	124, 151
CviAII	CATG	7 cut(s)	305, 410, 518, 665, 895, 958, 965
CviQI	GTAC	2 cut(s)	124, 151
DdeI	CTNAG	3 cut(s)	51, 65, 375
DpnI	GATC	5 cut(s)	430, 468, 663, 945, 1021
DpnII	GATC	5 cut(s)	428, 466, 661, 943, 1019
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	69, 231
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	69, 231
EciI	GGCGGA	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	95, 558
Eco91I	GGTNACC	2 cut(s)	512, 761
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoO65I	GGTNACC	2 cut(s)	512, 761
EcoRII	CCWGG	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	7 cut(s)	308, 413, 521, 668, 898, 961, 968
FaqI	GGGAC	3 cut(s)	236, 576, 866
FatI	CATG	7 cut(s)	304, 409, 517, 664, 894, 957, 964
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	4 cut(s)	35, 120, 365, 855
FokI	GGATG	1 cut(s)	756
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	35, 120, 365, 855
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	33, 303
GluI	GCNGC	4 cut(s)	35, 120, 365, 855
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	2 cut(s)	1023, 1047
HaeIII	GGCC	4 cut(s)	5, 242, 578, 1033
HapII	CCGG	2 cut(s)	96, 185
HgaI	GACGC	3 cut(s)	233, 370, 573
HhaI	GCGC	2 cut(s)	34, 304
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	7 cut(s)	308, 413, 521, 668, 898, 961, 968
Hin6I	GCGC	2 cut(s)	32, 302
HinP1I	GCGC	2 cut(s)	32, 302
HinfI	GANTC	4 cut(s)	107, 113, 163, 556
HpaII	CCGG	2 cut(s)	96, 185
HphI	GGTGA	5 cut(s)	617, 698, 773, 794, 931
Hpy166II	GTNNAC	5 cut(s)	151, 555, 619, 791, 934
Hpy188I	TCNGA	5 cut(s)	52, 112, 168, 397, 1010
Hpy188III	TCNNGA	2 cut(s)	1026, 1040
Hpy8I	GTNNAC	5 cut(s)	151, 555, 619, 791, 934
Hpy99I	CGWCG	2 cut(s)	20, 364
HpyAV	CCTTC	3 cut(s)	253, 779, 957
HpyCH4III	ACNGT	4 cut(s)	203, 488, 552, 767
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	9 cut(s)	341, 352, 409, 448, 526, 724, 791, 809, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 52, 61, 445, 851
HpyF3I	CTNAG	3 cut(s)	51, 65, 375
HpySE526I	ACGT	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	308, 413, 521, 668, 898, 961, 968
HspAI	GCGC	2 cut(s)	32, 302
Kzo9I	GATC	5 cut(s)	428, 466, 661, 943, 1019
LmnI	GCTCC	6 cut(s)	91, 262, 800, 842, 1042, 1056
Lsp1109I	GCAGC	3 cut(s)	21, 351, 841
LweI	GCATC	5 cut(s)	303, 396, 711, 958, 1003
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	10, 512, 730, 761
MalI	GATC	5 cut(s)	430, 468, 663, 945, 1021
MboI	GATC	5 cut(s)	428, 466, 661, 943, 1019
MboII	GAAGA	3 cut(s)	86, 248, 1014
MflI	RGATCY	3 cut(s)	466, 943, 1019
MhlI	GDGCHC	3 cut(s)	96, 793, 1061
MluCI	AATT	4 cut(s)	267, 756, 980, 1003
MlyI	GAGTC	3 cut(s)	101, 122, 550
MmeI	TCCRAC	3 cut(s)	111, 228, 639
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	3 cut(s)	456, 873, 1002
MspI	CCGG	2 cut(s)	96, 185
MspR9I	CCNGG	4 cut(s)	96, 97, 185, 581
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	3 cut(s)	32, 122, 359
MwoI	GCNNNNNNNGC	5 cut(s)	43, 52, 61, 445, 851
NciI	CCSGG	3 cut(s)	96, 97, 185
NdeII	GATC	5 cut(s)	428, 466, 661, 943, 1019
NlaIII	CATG	7 cut(s)	308, 413, 521, 668, 898, 961, 968
NlaIV	GGNNCC	4 cut(s)	93, 264, 468, 802
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	2 cut(s)	10, 761
NsiI	ATGCAT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	36, 121, 366, 856
PleI	GAGTC	3 cut(s)	101, 121, 550
PpsI	GAGTC	3 cut(s)	101, 121, 550
Psp6I	CCWGG	1 cut(s)	579
PspEI	GGTNACC	2 cut(s)	512, 761
PspFI	CCCAGC	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	4 cut(s)	93, 264, 468, 802
PspPI	GGNCC	2 cut(s)	577, 1031
PsuI	RGATCY	3 cut(s)	466, 943, 1019
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	2 cut(s)	125, 152
RsaNI	GTAC	2 cut(s)	124, 151
SaqAI	TTAA	3 cut(s)	456, 873, 1002
SatI	GCNGC	4 cut(s)	35, 120, 365, 855
Sau3AI	GATC	5 cut(s)	428, 466, 661, 943, 1019
Sau96I	GGNCC	2 cut(s)	577, 1031
SchI	GAGTC	3 cut(s)	101, 122, 550
ScrFI	CCNGG	4 cut(s)	96, 97, 185, 581
SduI	GDGCHC	3 cut(s)	96, 793, 1061
SfaNI	GCATC	5 cut(s)	303, 396, 711, 958, 1003
SmaI	CCCGGG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	267, 756, 980, 1003
SsiI	CCGC	2 cut(s)	117, 120
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	94, 95, 183, 579
TaaI	ACNGT	4 cut(s)	203, 488, 552, 767
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	105, 535, 838
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	267, 756, 980, 1003
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	456, 873, 1002
Tru9I	TTAA	3 cut(s)	456, 873, 1002
TscAI	CASTG	6 cut(s)	153, 555, 676, 723, 798, 811
TseFI	GTSAC	2 cut(s)	10, 761
TseI	GCWGC	3 cut(s)	34, 364, 854
Tsp45I	GTSAC	2 cut(s)	10, 761
TspDTI	ATGAA	2 cut(s)	321, 974
TspMI	CCCGGG	1 cut(s)	95
TspRI	CASTG	6 cut(s)	153, 555, 676, 723, 798, 811
Tth111I	GACNNNGTC	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	789
XapI	RAATTY	1 cut(s)	980
XmaI	CCCGGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.