Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

9737090 .. 9739729

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG117700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCGCTGCCCAGAATGCTATCGGAGCGTTTGTCTTTGAGGGAGGAAGAGGCCGAGGAGGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACAGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTAGACGTGCAGGCGTTTAAAGAACGCGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTATTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGCGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCAAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAAGTTCAGAGATGCAAGGTCTGCTGGAGGGCAGACTTCAGAAAAAAGTGACGCGAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

355

Amino Acids

38.54

Weight (kDa)

5.04

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	74 - 177	1.1e-38	Serine acetyltransferase, N-terminal
Hexapep	PF00132	258 - 291	3.1e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	936
AccII	CGCG	4 cut(s)	32, 125, 468, 1058
AciI	CCGC	2 cut(s)	120, 123
AclWI	GGATC	3 cut(s)	464, 672, 941
AcsI	RAATTY	1 cut(s)	983
AcuI	CTGAAG	1 cut(s)	1026
AfaI	GTAC	3 cut(s)	128, 155, 673
AfiI	CCNNNNNNNGG	3 cut(s)	129, 223, 782
AgsI	TTSAA	2 cut(s)	639, 992
AhdI	GACNNNNNGTC	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	448
AluBI	AGCT	7 cut(s)	24, 282, 382, 476, 545, 857, 1001
AluI	AGCT	7 cut(s)	24, 282, 382, 476, 545, 857, 1001
Alw21I	GWGCWC	2 cut(s)	796, 1064
Alw26I	GTCTC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	792
AlwI	GGATC	3 cut(s)	464, 672, 941
Ama87I	CYCGRG	2 cut(s)	98, 176
AoxI	GGCC	4 cut(s)	3, 78, 243, 579
ApaLI	GTGCAC	1 cut(s)	792
ApeKI	GCWGC	2 cut(s)	34, 857
ApoI	RAATTY	1 cut(s)	983
AspLEI	GCGC	2 cut(s)	34, 307
AsuC2I	CCSGG	3 cut(s)	99, 100, 188
AsuHPI	GGTGA	3 cut(s)	620, 776, 797
AvaI	CYCGRG	2 cut(s)	98, 176
BaeGI	GKGCMC	1 cut(s)	796
BaeI	ACNNNNGTAYC	2 cut(s)	663, 696
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	796, 1064
BbvI	GCAGC	2 cut(s)	21, 844
BccI	CCATC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BcnI	CCSGG	3 cut(s)	99, 100, 188
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	3 cut(s)	35, 123, 858
BlsI	GCNGC	3 cut(s)	36, 124, 859
Bme1390I	CCNGG	3 cut(s)	99, 100, 188
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmeT110I	CYCGRG	2 cut(s)	98, 176
BmgBI	CACGTC	1 cut(s)	448
BmiI	GGNNCC	4 cut(s)	96, 267, 805, 847
BmrFI	CCNGG	3 cut(s)	99, 100, 188
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	5 cut(s)	306, 399, 714, 961, 1006
BmuI	ACTGGG	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	1050
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	3 cut(s)	99, 100, 188
BsaJI	CCNNGG	3 cut(s)	81, 98, 582
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 86, 116, 639, 669
Bsc4I	CCNNNNNNNGG	3 cut(s)	129, 223, 782
Bse1I	ACTGG	2 cut(s)	754, 807
BseDI	CCNNGG	3 cut(s)	81, 98, 582
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	3 cut(s)	129, 223, 782
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	754, 807
BseRI	GAGGAG	4 cut(s)	98, 101, 104, 107
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	21, 844
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	4 cut(s)	32, 125, 468, 1058
BshFI	GGCC	4 cut(s)	5, 80, 245, 581
BsiHKAI	GWGCWC	2 cut(s)	796, 1064
BsiHKCI	CYCGRG	2 cut(s)	98, 176
BsiSI	CCGG	3 cut(s)	99, 149, 188
BslFI	GGGAC	2 cut(s)	239, 869
BslI	CCNNNNNNNGG	3 cut(s)	129, 223, 782
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	239, 869
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	5, 80, 245, 581
BsoBI	CYCGRG	2 cut(s)	98, 176
Bsp1286I	GDGCHC	3 cut(s)	99, 796, 1064
Bsp143I	GATC	4 cut(s)	431, 469, 664, 946
BspACI	CCGC	2 cut(s)	120, 123
BspANI	GGCC	4 cut(s)	5, 80, 245, 581
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	4 cut(s)	32, 125, 468, 1058
BspLI	GGNNCC	4 cut(s)	96, 267, 805, 847
BspPI	GGATC	3 cut(s)	464, 672, 941
BsrI	ACTGG	2 cut(s)	754, 807
BssECI	CCNNGG	3 cut(s)	81, 98, 582
BssMI	GATC	4 cut(s)	431, 469, 664, 946
BssT1I	CCWWGG	1 cut(s)	582
Bst4CI	ACNGT	4 cut(s)	206, 491, 555, 770
Bst6I	CTCTTC	2 cut(s)	69, 234
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstC8I	GCNNGC	5 cut(s)	7, 295, 324, 453, 1060
BstDEI	CTNAG	1 cut(s)	378
BstEII	GGTNACC	2 cut(s)	515, 764
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	4 cut(s)	32, 125, 468, 1058
BstHHI	GCGC	2 cut(s)	34, 307
BstKTI	GATC	4 cut(s)	434, 472, 667, 949
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	4 cut(s)	431, 469, 664, 946
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 52, 448, 603, 854, 1025
BstPI	GGTNACC	2 cut(s)	515, 764
BstSCI	CCNGG	3 cut(s)	97, 98, 186
BstSLI	GKGCMC	1 cut(s)	796
BstUI	CGCG	4 cut(s)	32, 125, 468, 1058
BstV1I	GCAGC	2 cut(s)	21, 844
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
BsuRI	GGCC	4 cut(s)	5, 80, 245, 581
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	772
BtsIMutI	CAGTG	2 cut(s)	551, 814
Cac8I	GCNNGC	5 cut(s)	7, 295, 324, 453, 1060
CfoI	GCGC	2 cut(s)	34, 307
Cfr9I	CCCGGG	1 cut(s)	98
CseI	GACGC	2 cut(s)	236, 576
Csp6I	GTAC	3 cut(s)	127, 154, 672
CviAII	CATG	8 cut(s)	308, 413, 521, 668, 850, 898, 961, 968
CviQI	GTAC	3 cut(s)	127, 154, 672
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	4 cut(s)	433, 471, 666, 948
DpnII	GATC	4 cut(s)	431, 469, 664, 946
DraI	TTTAAA	1 cut(s)	460
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	69, 234
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	2 cut(s)	69, 234
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	1026
Eco88I	CYCGRG	2 cut(s)	98, 176
Eco91I	GGTNACC	2 cut(s)	515, 764
EcoO65I	GGTNACC	2 cut(s)	515, 764
EcoT14I	CCWWGG	1 cut(s)	582
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	8 cut(s)	311, 416, 524, 671, 853, 901, 964, 971
FaqI	GGGAC	2 cut(s)	239, 869
FatI	CATG	8 cut(s)	307, 412, 520, 667, 849, 897, 960, 967
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	3 cut(s)	35, 123, 858
FokI	GGATG	1 cut(s)	759
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	35, 123, 858
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	2 cut(s)	33, 306
GluI	GCNGC	3 cut(s)	35, 123, 858
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	4 cut(s)	5, 80, 245, 581
HapII	CCGG	3 cut(s)	99, 149, 188
HgaI	GACGC	2 cut(s)	236, 576
HhaI	GCGC	2 cut(s)	34, 307
Hin1II	CATG	8 cut(s)	311, 416, 524, 671, 853, 901, 964, 971
Hin6I	GCGC	2 cut(s)	32, 305
HinP1I	GCGC	2 cut(s)	32, 305
HinfI	GANTC	5 cut(s)	110, 116, 166, 179, 559
HpaII	CCGG	3 cut(s)	99, 149, 188
HphI	GGTGA	3 cut(s)	620, 776, 797
Hpy166II	GTNNAC	4 cut(s)	154, 622, 794, 937
Hpy188I	TCNGA	7 cut(s)	52, 115, 171, 184, 211, 1013, 1045
Hpy8I	GTNNAC	4 cut(s)	154, 622, 794, 937
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	133, 256, 782, 960
HpyCH4III	ACNGT	4 cut(s)	206, 491, 555, 770
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	9 cut(s)	344, 355, 412, 451, 529, 727, 794, 812, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 52, 448, 603, 854, 1025
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	8 cut(s)	311, 416, 524, 671, 853, 901, 964, 971
HspAI	GCGC	2 cut(s)	32, 305
Kzo9I	GATC	4 cut(s)	431, 469, 664, 946
LmnI	GCTCC	5 cut(s)	52, 94, 265, 803, 845
Lsp1109I	GCAGC	2 cut(s)	21, 844
LweI	GCATC	5 cut(s)	306, 399, 714, 961, 1006
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	5 cut(s)	10, 515, 733, 764, 1052
MalI	GATC	4 cut(s)	433, 471, 666, 948
MboI	GATC	4 cut(s)	431, 469, 664, 946
MboII	GAAGA	2 cut(s)	86, 251
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	3 cut(s)	99, 796, 1064
MluCI	AATT	4 cut(s)	270, 642, 759, 983
MlyI	GAGTC	4 cut(s)	104, 125, 188, 568
MmeI	TCCRAC	4 cut(s)	114, 207, 231, 642
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	4 cut(s)	459, 876, 956, 1005
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	3 cut(s)	99, 149, 188
MspR9I	CCNGG	3 cut(s)	99, 100, 188
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	4 cut(s)	32, 125, 468, 1058
MwoI	GCNNNNNNNGC	6 cut(s)	43, 52, 448, 603, 854, 1025
NciI	CCSGG	3 cut(s)	99, 100, 188
NdeII	GATC	4 cut(s)	431, 469, 664, 946
NlaIII	CATG	8 cut(s)	311, 416, 524, 671, 853, 901, 964, 971
NlaIV	GGNNCC	4 cut(s)	96, 267, 805, 847
NmeAIII	GCCGAG	3 cut(s)	106, 418, 623
NmuCI	GTSAC	3 cut(s)	10, 764, 1052
NsiI	ATGCAT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	36, 124, 859
PleI	GAGTC	4 cut(s)	104, 124, 187, 567
PpsI	GAGTC	4 cut(s)	104, 124, 187, 567
PspEI	GGTNACC	2 cut(s)	515, 764
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	96, 267, 805, 847
PsuI	RGATCY	1 cut(s)	946
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	128, 155, 673
RsaNI	GTAC	3 cut(s)	127, 154, 672
SaqAI	TTAA	4 cut(s)	459, 876, 956, 1005
SatI	GCNGC	3 cut(s)	35, 123, 858
Sau3AI	GATC	4 cut(s)	431, 469, 664, 946
SchI	GAGTC	4 cut(s)	104, 125, 188, 568
ScrFI	CCNGG	3 cut(s)	99, 100, 188
SduI	GDGCHC	3 cut(s)	99, 796, 1064
SfaNI	GCATC	5 cut(s)	306, 399, 714, 961, 1006
SmaI	CCCGGG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	270, 642, 759, 983
SsiI	CCGC	2 cut(s)	120, 123
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	97, 98, 186
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	4 cut(s)	206, 491, 555, 770
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	108, 538
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	270, 642, 759, 983
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	4 cut(s)	459, 876, 956, 1005
Tru9I	TTAA	4 cut(s)	459, 876, 956, 1005
TscAI	CASTG	2 cut(s)	558, 814
TseFI	GTSAC	3 cut(s)	10, 764, 1052
TseI	GCWGC	2 cut(s)	34, 857
Tsp45I	GTSAC	3 cut(s)	10, 764, 1052
TspDTI	ATGAA	3 cut(s)	708, 942, 977
TspMI	CCCGGG	1 cut(s)	98
TspRI	CASTG	2 cut(s)	558, 814
Tth111I	GACNNNGTC	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	792
XapI	RAATTY	1 cut(s)	983
XmaI	CCCGGG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	936
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.