Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

10167467 .. 10170085

Gene Structure 2619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCGCTGCCCAGAATGCTATCGGAGCGTTTGTCTTTGAGGGAGGAAGAGGCCGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACAGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTAGACGTGCAGGCGTTTAAAGAACGCGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTACTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGTGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACCATACTTGGGAATATAAAAATAGGTCAAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAAGTTCAGAGATGCAAGGTCTGCTGGAGGGCAGACTTCAGAAAAAAGTGACGCGAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

353

Amino Acids

38.28

Weight (kDa)

5.15

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	72 - 175	1.1e-38	Serine acetyltransferase, N-terminal
Hexapep	PF00132	256 - 289	3.1e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	930
AccII	CGCG	4 cut(s)	32, 119, 462, 1052
AciI	CCGC	2 cut(s)	114, 117
AclWI	GGATC	3 cut(s)	458, 666, 935
AcsI	RAATTY	1 cut(s)	977
AcuI	CTGAAG	1 cut(s)	1020
AfaI	GTAC	3 cut(s)	122, 149, 667
AfiI	CCNNNNNNNGG	4 cut(s)	123, 217, 776, 816
AgsI	TTSAA	2 cut(s)	633, 986
AhdI	GACNNNNNGTC	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	442
AluBI	AGCT	7 cut(s)	24, 276, 376, 470, 539, 851, 995
AluI	AGCT	7 cut(s)	24, 276, 376, 470, 539, 851, 995
Alw21I	GWGCWC	2 cut(s)	790, 1058
Alw26I	GTCTC	1 cut(s)	408
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	3 cut(s)	458, 666, 935
Ama87I	CYCGRG	2 cut(s)	92, 170
AoxI	GGCC	4 cut(s)	3, 78, 237, 573
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	2 cut(s)	34, 851
ApoI	RAATTY	1 cut(s)	977
AspLEI	GCGC	2 cut(s)	34, 301
AsuC2I	CCSGG	3 cut(s)	93, 94, 182
AsuHPI	GGTGA	3 cut(s)	614, 770, 791
AvaI	CYCGRG	2 cut(s)	92, 170
BaeGI	GKGCMC	1 cut(s)	790
BaeI	ACNNNNGTAYC	2 cut(s)	657, 690
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	790, 1058
BbvI	GCAGC	2 cut(s)	21, 838
BccI	CCATC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BcnI	CCSGG	3 cut(s)	93, 94, 182
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	437
BisI	GCNGC	3 cut(s)	35, 117, 852
BlsI	GCNGC	3 cut(s)	36, 118, 853
Bme1390I	CCNGG	3 cut(s)	93, 94, 182
BmeRI	GACNNNNNGTC	1 cut(s)	109
BmeT110I	CYCGRG	2 cut(s)	92, 170
BmgBI	CACGTC	1 cut(s)	442
BmiI	GGNNCC	4 cut(s)	90, 261, 799, 841
BmrFI	CCNGG	3 cut(s)	93, 94, 182
BmrI	ACTGGG	1 cut(s)	753
BmsI	GCATC	5 cut(s)	300, 393, 708, 955, 1000
BmuI	ACTGGG	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	1044
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	3 cut(s)	93, 94, 182
BsaJI	CCNNGG	3 cut(s)	81, 92, 576
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 80, 110, 633, 663
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 217, 776, 816
Bse1I	ACTGG	2 cut(s)	748, 801
BseDI	CCNNGG	3 cut(s)	81, 92, 576
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	4 cut(s)	123, 217, 776, 816
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	748, 801
BseRI	GAGGAG	2 cut(s)	98, 101
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	2 cut(s)	21, 838
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	4 cut(s)	32, 119, 462, 1052
BshFI	GGCC	4 cut(s)	5, 80, 239, 575
BsiHKAI	GWGCWC	2 cut(s)	790, 1058
BsiHKCI	CYCGRG	2 cut(s)	92, 170
BsiSI	CCGG	3 cut(s)	93, 143, 182
BslFI	GGGAC	2 cut(s)	233, 863
BslI	CCNNNNNNNGG	4 cut(s)	123, 217, 776, 816
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	233, 863
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	5, 80, 239, 575
BsoBI	CYCGRG	2 cut(s)	92, 170
Bsp1286I	GDGCHC	3 cut(s)	93, 790, 1058
Bsp143I	GATC	4 cut(s)	425, 463, 658, 940
BspACI	CCGC	2 cut(s)	114, 117
BspANI	GGCC	4 cut(s)	5, 80, 239, 575
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	4 cut(s)	32, 119, 462, 1052
BspLI	GGNNCC	4 cut(s)	90, 261, 799, 841
BspPI	GGATC	3 cut(s)	458, 666, 935
BsrI	ACTGG	2 cut(s)	748, 801
BssECI	CCNNGG	3 cut(s)	81, 92, 576
BssMI	GATC	4 cut(s)	425, 463, 658, 940
BssT1I	CCWWGG	1 cut(s)	576
Bst4CI	ACNGT	5 cut(s)	200, 485, 498, 549, 764
Bst6I	CTCTTC	2 cut(s)	69, 228
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	5 cut(s)	7, 289, 318, 447, 1054
BstDEI	CTNAG	1 cut(s)	372
BstEII	GGTNACC	2 cut(s)	509, 758
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	4 cut(s)	32, 119, 462, 1052
BstHHI	GCGC	2 cut(s)	34, 301
BstKTI	GATC	4 cut(s)	428, 466, 661, 943
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	425, 463, 658, 940
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 52, 442, 848, 1019
BstPI	GGTNACC	2 cut(s)	509, 758
BstSCI	CCNGG	3 cut(s)	91, 92, 180
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	4 cut(s)	32, 119, 462, 1052
BstV1I	GCAGC	2 cut(s)	21, 838
BstX2I	RGATCY	1 cut(s)	940
BstYI	RGATCY	1 cut(s)	940
BsuRI	GGCC	4 cut(s)	5, 80, 239, 575
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	2 cut(s)	545, 808
Cac8I	GCNNGC	5 cut(s)	7, 289, 318, 447, 1054
CfoI	GCGC	2 cut(s)	34, 301
Cfr9I	CCCGGG	1 cut(s)	92
CseI	GACGC	2 cut(s)	230, 570
Csp6I	GTAC	3 cut(s)	121, 148, 666
CviAII	CATG	8 cut(s)	302, 407, 515, 662, 844, 892, 955, 962
CviQI	GTAC	3 cut(s)	121, 148, 666
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	4 cut(s)	427, 465, 660, 942
DpnII	GATC	4 cut(s)	425, 463, 658, 940
DraI	TTTAAA	1 cut(s)	454
DriI	GACNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	69, 228
Eam1105I	GACNNNNNGTC	1 cut(s)	109
EarI	CTCTTC	2 cut(s)	69, 228
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	2 cut(s)	92, 170
Eco91I	GGTNACC	2 cut(s)	509, 758
EcoO65I	GGTNACC	2 cut(s)	509, 758
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	8 cut(s)	305, 410, 518, 665, 847, 895, 958, 965
FaqI	GGGAC	2 cut(s)	233, 863
FatI	CATG	8 cut(s)	301, 406, 514, 661, 843, 891, 954, 961
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	3 cut(s)	35, 117, 852
FokI	GGATG	1 cut(s)	753
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	35, 117, 852
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	2 cut(s)	33, 300
GluI	GCNGC	3 cut(s)	35, 117, 852
GsaI	CCCAGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	1044
HaeIII	GGCC	4 cut(s)	5, 80, 239, 575
HapII	CCGG	3 cut(s)	93, 143, 182
HgaI	GACGC	2 cut(s)	230, 570
HhaI	GCGC	2 cut(s)	34, 301
Hin1II	CATG	8 cut(s)	305, 410, 518, 665, 847, 895, 958, 965
Hin6I	GCGC	2 cut(s)	32, 299
HinP1I	GCGC	2 cut(s)	32, 299
HinfI	GANTC	5 cut(s)	104, 110, 160, 173, 553
HpaII	CCGG	3 cut(s)	93, 143, 182
HphI	GGTGA	3 cut(s)	614, 770, 791
Hpy166II	GTNNAC	4 cut(s)	148, 616, 788, 931
Hpy188I	TCNGA	7 cut(s)	52, 109, 165, 178, 205, 1007, 1039
Hpy8I	GTNNAC	4 cut(s)	148, 616, 788, 931
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	127, 250, 776, 954
HpyCH4III	ACNGT	5 cut(s)	200, 485, 498, 549, 764
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	9 cut(s)	338, 349, 406, 445, 523, 721, 788, 806, 1013
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 52, 442, 848, 1019
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	8 cut(s)	305, 410, 518, 665, 847, 895, 958, 965
HspAI	GCGC	2 cut(s)	32, 299
Kzo9I	GATC	4 cut(s)	425, 463, 658, 940
LmnI	GCTCC	5 cut(s)	52, 88, 259, 797, 839
Lsp1109I	GCAGC	2 cut(s)	21, 838
LweI	GCATC	5 cut(s)	300, 393, 708, 955, 1000
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	5 cut(s)	10, 509, 727, 758, 1046
MalI	GATC	4 cut(s)	427, 465, 660, 942
MboI	GATC	4 cut(s)	425, 463, 658, 940
MboII	GAAGA	2 cut(s)	86, 245
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	3 cut(s)	93, 790, 1058
MluCI	AATT	4 cut(s)	264, 636, 753, 977
MlyI	GAGTC	4 cut(s)	98, 119, 182, 562
MmeI	TCCRAC	4 cut(s)	108, 201, 225, 636
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	4 cut(s)	453, 870, 950, 999
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	3 cut(s)	93, 143, 182
MspR9I	CCNGG	3 cut(s)	93, 94, 182
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	4 cut(s)	32, 119, 462, 1052
MwoI	GCNNNNNNNGC	5 cut(s)	43, 52, 442, 848, 1019
NciI	CCSGG	3 cut(s)	93, 94, 182
NdeII	GATC	4 cut(s)	425, 463, 658, 940
NlaIII	CATG	8 cut(s)	305, 410, 518, 665, 847, 895, 958, 965
NlaIV	GGNNCC	4 cut(s)	90, 261, 799, 841
NmeAIII	GCCGAG	3 cut(s)	106, 412, 617
NmuCI	GTSAC	3 cut(s)	10, 758, 1046
NsiI	ATGCAT	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	160
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	36, 118, 853
PleI	GAGTC	4 cut(s)	98, 118, 181, 561
PpsI	GAGTC	4 cut(s)	98, 118, 181, 561
PspEI	GGTNACC	2 cut(s)	509, 758
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	90, 261, 799, 841
PsuI	RGATCY	1 cut(s)	940
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	3 cut(s)	122, 149, 667
RsaNI	GTAC	3 cut(s)	121, 148, 666
SaqAI	TTAA	4 cut(s)	453, 870, 950, 999
SatI	GCNGC	3 cut(s)	35, 117, 852
Sau3AI	GATC	4 cut(s)	425, 463, 658, 940
SchI	GAGTC	4 cut(s)	98, 119, 182, 562
ScrFI	CCNGG	3 cut(s)	93, 94, 182
SduI	GDGCHC	3 cut(s)	93, 790, 1058
SfaNI	GCATC	5 cut(s)	300, 393, 708, 955, 1000
SmaI	CCCGGG	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	264, 636, 753, 977
SsiI	CCGC	2 cut(s)	114, 117
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	3 cut(s)	91, 92, 180
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	5 cut(s)	200, 485, 498, 549, 764
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	102, 532
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	264, 636, 753, 977
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	4 cut(s)	453, 870, 950, 999
Tru9I	TTAA	4 cut(s)	453, 870, 950, 999
TscAI	CASTG	2 cut(s)	552, 808
TseFI	GTSAC	3 cut(s)	10, 758, 1046
TseI	GCWGC	2 cut(s)	34, 851
Tsp45I	GTSAC	3 cut(s)	10, 758, 1046
TspDTI	ATGAA	3 cut(s)	702, 936, 971
TspMI	CCCGGG	1 cut(s)	92
TspRI	CASTG	2 cut(s)	552, 808
Tth111I	GACNNNGTC	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	786
XapI	RAATTY	1 cut(s)	977
XmaI	CCCGGG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	930
XspI	CTAG	1 cut(s)	437
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.