Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

6384288 .. 6386216

Gene Structure 1929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTTGCGTGAGCGATGAGAGCTGGGTACCTCTCCCCAAACTGCTCTCCGACCGCCTCTATCTCCGGGAAGACGACCGCCGCGACGACGACGACGAGGAGCCTGGGTTTTTCGGGTCCGAGTCCACAGCGTACCGGTTGGAGAAGGTTTTTCCGGTTTATGCATTGGGGATTTCGAAGCCTGCGTCCGACTCCGTTGTTGGACCCGCTTCCGTTTCTGGCGACCCGATTTGGGATGCAGTAAGGGAAGAGGCCAAGTTGGAGGCTGAAAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCCAGCATCTTGGCACATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTCGCCAACAGACTGCAGAACCCGACGCTTTTGGCAACTCAACTGATGGATATATTCTATGATGTGATGCTGCGTGATGAAGATATTCAGCGATCCATTCGCTTAGATGTGCAGGCATTTAAAGACCGTGATCCAGCCTGCTTGTCATATTGTTCAGCCCTATTGTATCTCAAGGGCTACCATTCTTTGCAAGTACATCGAGTAGCTCATTCGTTGTGGAATCAAGGACGTAAAGTATTGGCCTTGGCATTGCAAAGCCGAATTAGCGAGGTCTTTGGAGTGGACATTCACCCAGCTGCAAAAATTGGAGAGGGAATACTGTTGGATCGATGGTACTGGTGTGGTTATTGGCGAAACTGCTGTTGTAGGAAACAGAGTTTCACTGATGCACGGTGTGACTTTGGGGGGAACTGGGAAGGAAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

259

Amino Acids

29.32

Weight (kDa)

4.95

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	77 - 180	6.9e-38	Serine acetyltransferase, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	84
AciI	CCGC	4 cut(s)	55, 79, 82, 207
AclWI	GGATC	3 cut(s)	435, 473, 681
AdeI	CACNNNGTG	1 cut(s)	743
AfaI	GTAC	4 cut(s)	30, 134, 543, 683
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgeI	ACCGGT	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	4 cut(s)	24, 291, 554, 644
AluI	AGCT	4 cut(s)	24, 291, 554, 644
AlwI	GGATC	3 cut(s)	435, 473, 681
AoxI	GGCC	2 cut(s)	252, 588
ApeKI	GCWGC	2 cut(s)	418, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AsiGI	ACCGGT	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	117, 203
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	629
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	117, 203
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BanI	GGYRCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	405, 631
BccI	CCATC	2 cut(s)	388, 672
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	3 cut(s)	82, 419, 645
BlsI	GCNGC	3 cut(s)	83, 420, 646
Bme1390I	CCNGG	2 cut(s)	68, 105
Bme18I	GGWCC	2 cut(s)	117, 203
BmgT120I	GGNCC	2 cut(s)	117, 203
BmiI	GGNNCC	5 cut(s)	30, 102, 118, 205, 276
BmrFI	CCNGG	2 cut(s)	68, 105
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	4 cut(s)	226, 315, 405, 724
BmuI	ACTGGG	1 cut(s)	769
BpiI	GAAGAC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	676
BsaJI	CCNNGG	2 cut(s)	104, 591
BsaWI	WCCGGW	2 cut(s)	135, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	689, 764
Bse3DI	GCAATG	1 cut(s)	596
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	2 cut(s)	104, 591
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	689, 764
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	405, 631
BseYI	CCCAGC	2 cut(s)	24, 640
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	2 cut(s)	55, 79
BshFI	GGCC	2 cut(s)	254, 590
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	676
BsiEI	CGRYCG	2 cut(s)	55, 79
BsiSI	CCGG	3 cut(s)	67, 136, 155
BslI	CCNNNNNNNGG	1 cut(s)	232
BsnI	GGCC	2 cut(s)	254, 590
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	440, 478, 673
BspACI	CCGC	4 cut(s)	55, 79, 82, 207
BspANI	GGCC	2 cut(s)	254, 590
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	5 cut(s)	30, 102, 118, 205, 276
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	3 cut(s)	435, 473, 681
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	689, 764
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	104, 591
BssMI	GATC	3 cut(s)	440, 478, 673
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	476, 669, 741
Bst6I	CTCTTC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	6 cut(s)	7, 183, 304, 333, 462, 487
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	443, 481, 676
BstMBI	GATC	3 cut(s)	440, 478, 673
BstMCI	CGRYCG	2 cut(s)	55, 79
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 612
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	66, 103
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	405, 631
BstV2I	GAAGAC	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	254, 590
BsuTUI	ATCGAT	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	6 cut(s)	7, 183, 304, 333, 462, 487
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	117, 203
ClaI	ATCGAT	1 cut(s)	676
CseI	GACGC	2 cut(s)	174, 382
Csp6I	GTAC	4 cut(s)	29, 133, 542, 682
CspAI	ACCGGT	1 cut(s)	135
CviAII	CATG	1 cut(s)	317
CviQI	GTAC	4 cut(s)	29, 133, 542, 682
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	3 cut(s)	442, 480, 675
DpnII	GATC	3 cut(s)	440, 478, 673
DraI	TTTAAA	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	743
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	117, 203
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	1 cut(s)	320
FaiI	YATR	6 cut(s)	162, 300, 318, 401, 408, 496
FatI	CATG	1 cut(s)	316
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	82, 419, 645
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	3 cut(s)	82, 419, 645
GluI	GCNGC	3 cut(s)	82, 419, 645
GsaI	CCCAGC	2 cut(s)	28, 644
HaeIII	GGCC	2 cut(s)	254, 590
HapII	CCGG	3 cut(s)	67, 136, 155
HgaI	GACGC	2 cut(s)	174, 382
Hin1II	CATG	1 cut(s)	320
HinfI	GANTC	3 cut(s)	122, 191, 568
HpaII	CCGG	3 cut(s)	67, 136, 155
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	126, 631
Hpy188I	TCNGA	3 cut(s)	52, 121, 190
Hpy8I	GTNNAC	2 cut(s)	126, 631
Hpy99I	CGWCG	5 cut(s)	89, 92, 95, 98, 376
HpyAV	CCTTC	2 cut(s)	139, 758
HpyCH4III	ACNGT	3 cut(s)	476, 669, 741
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	8 cut(s)	164, 239, 364, 460, 538, 601, 647, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 612
HpyF3I	CTNAG	1 cut(s)	451
HpySE526I	ACGT	1 cut(s)	577
Hsp92II	CATG	1 cut(s)	320
KpnI	GGTACC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	440, 478, 673
LmnI	GCTCC	2 cut(s)	100, 274
Lsp1109I	GCAGC	2 cut(s)	405, 631
LweI	GCATC	4 cut(s)	226, 315, 405, 724
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	3 cut(s)	442, 480, 675
MboI	GATC	3 cut(s)	440, 478, 673
MboII	GAAGA	3 cut(s)	83, 260, 440
MluCI	AATT	4 cut(s)	279, 609, 651, 769
MlyI	GAGTC	2 cut(s)	131, 185
MmeI	TCCRAC	6 cut(s)	75, 120, 181, 213, 240, 651
MnlI	CCTC	7 cut(s)	42, 68, 91, 244, 256, 610, 652
Mph1103I	ATGCAT	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	3 cut(s)	67, 136, 155
MspR9I	CCNGG	2 cut(s)	68, 105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	21, 612
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	3 cut(s)	440, 478, 673
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	5 cut(s)	30, 102, 118, 205, 276
NmuCI	GTSAC	1 cut(s)	743
NsiI	ATGCAT	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 93, 182
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	66
PinAI	ACCGGT	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	83, 420, 646
PleI	GAGTC	2 cut(s)	130, 185
PpsI	GAGTC	2 cut(s)	130, 185
Psp6I	CCWGG	1 cut(s)	103
PspFI	CCCAGC	2 cut(s)	24, 640
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	5 cut(s)	30, 102, 118, 205, 276
PspPI	GGNCC	2 cut(s)	117, 203
PstI	CTGCAG	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	4 cut(s)	30, 134, 543, 683
RsaNI	GTAC	4 cut(s)	29, 133, 542, 682
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	82, 419, 645
Sau3AI	GATC	3 cut(s)	440, 478, 673
Sau96I	GGNCC	2 cut(s)	117, 203
SchI	GAGTC	2 cut(s)	131, 185
ScrFI	CCNGG	2 cut(s)	68, 105
SetI	ASST	8 cut(s)	26, 34, 150, 293, 556, 580, 621, 646
SfaNI	GCATC	4 cut(s)	226, 315, 405, 724
SfcI	CTRYAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	2 cut(s)	117, 203
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	4 cut(s)	279, 609, 651, 769
SsiI	CCGC	4 cut(s)	55, 79, 82, 207
StyD4I	CCNGG	2 cut(s)	66, 103
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	476, 669, 741
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	3 cut(s)	176, 547, 676
TasI	AATT	4 cut(s)	279, 609, 651, 769
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	2 cut(s)	418, 644
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	1 cut(s)	441
TspGWI	ACGGA	2 cut(s)	184, 202
TspRI	CASTG	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	117, 203
XmnI	GAANNNNTTC	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.