Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464327.1

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1347

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464327.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

cttcaaaaattggagagggagtattgttggatcatggtacgggtgtggttattggggaaactgctgttataggaaacagagtttcattgatgcagggtgtaactttgggaggaactgggaaagaaattggtgaccgtcatccaaaaataggtgaaggtgcactaataggagccagtgcaactatacttgggaatataaaaataggtcaaggagccatgatagctgcttgttcccttgtgcttaaagatgtccctccacacagcatggtggcaggaataccagcaaaagtgattggatatgtagacgaaaaagatccttcattaaccatgaagcatgatgctaccaaagaattttttgaaaatgtagctgtcaagttcagagatgcaaggtctgctggagggcagacttcagaaaaaagtgacgcgagcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

143

Amino Acids

14.64

Weight (kDa)

6.4

Isoelectric Point (pI)

15.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	302
AccII	CGCG	1 cut(s)	424
AclWI	GGATC	2 cut(s)	38, 307
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	5, 358
AluBI	AGCT	2 cut(s)	223, 367
AluI	AGCT	2 cut(s)	223, 367
Alw21I	GWGCWC	2 cut(s)	162, 430
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	38, 307
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	142, 163
BaeGI	GKGCMC	1 cut(s)	162
BaeI	ACNNNNGTAYC	2 cut(s)	29, 62
Bbv12I	GWGCWC	2 cut(s)	162, 430
BbvI	GCAGC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	171, 213
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	3 cut(s)	80, 327, 372
BmuI	ACTGGG	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	120, 173
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	120, 173
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	424
BsiHKAI	GWGCWC	2 cut(s)	162, 430
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	235
Bsp1286I	GDGCHC	2 cut(s)	162, 430
Bsp143I	GATC	2 cut(s)	30, 312
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	171, 213
BspPI	GGATC	2 cut(s)	38, 307
BsrI	ACTGG	2 cut(s)	120, 173
BssMI	GATC	2 cut(s)	30, 312
Bst4CI	ACNGT	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	426
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	33, 315
BstMBI	GATC	2 cut(s)	30, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 391
BstPI	GGTNACC	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	5 cut(s)	34, 216, 264, 327, 334
CviJI	RGCY	4 cut(s)	172, 214, 223, 367
CviKI_1	RGCY	4 cut(s)	172, 214, 223, 367
CviQI	GTAC	1 cut(s)	38
DpnI	GATC	2 cut(s)	32, 314
DpnII	GATC	2 cut(s)	30, 312
Eco57I	CTGAAG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
FaeI	CATG	5 cut(s)	37, 219, 267, 330, 337
FaiI	YATR	9 cut(s)	35, 70, 184, 196, 217, 265, 299, 328, 335
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	5 cut(s)	33, 215, 263, 326, 333
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	416
Hin1II	CATG	5 cut(s)	37, 219, 267, 330, 337
HphI	GGTGA	2 cut(s)	142, 163
Hpy166II	GTNNAC	2 cut(s)	160, 303
Hpy188I	TCNGA	2 cut(s)	379, 411
Hpy8I	GTNNAC	2 cut(s)	160, 303
HpyAV	CCTTC	2 cut(s)	148, 326
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	93, 160, 178, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 391
Hsp92II	CATG	5 cut(s)	37, 219, 267, 330, 337
Kzo9I	GATC	2 cut(s)	30, 312
LmnI	GCTCC	2 cut(s)	169, 211
LpnPI	CCDG	6 cut(s)	79, 101, 186, 257, 293, 380
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	3 cut(s)	80, 327, 372
MaeIII	GTNAC	3 cut(s)	99, 130, 418
MalI	GATC	2 cut(s)	32, 314
MboI	GATC	2 cut(s)	30, 312
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	162, 430
MluCI	AATT	3 cut(s)	8, 125, 349
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	4 cut(s)	9, 103, 263, 391
MseI	TTAA	2 cut(s)	242, 322
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	2 cut(s)	220, 391
NdeII	GATC	2 cut(s)	30, 312
NlaIII	CATG	5 cut(s)	37, 219, 267, 330, 337
NlaIV	GGNNCC	2 cut(s)	171, 213
NmuCI	GTSAC	2 cut(s)	130, 418
PkrI	GCNGC	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	171, 213
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	242, 322
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	30, 312
SduI	GDGCHC	2 cut(s)	162, 430
SetI	ASST	6 cut(s)	153, 159, 207, 225, 369, 391
SfaNI	GCATC	3 cut(s)	80, 327, 372
Sse9I	AATT	3 cut(s)	8, 125, 349
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	3 cut(s)	8, 125, 349
Tru1I	TTAA	2 cut(s)	242, 322
Tru9I	TTAA	2 cut(s)	242, 322
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	2 cut(s)	130, 418
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	2 cut(s)	130, 418
TspDTI	ATGAA	3 cut(s)	74, 308, 343
TspRI	CASTG	1 cut(s)	180
VneI	GTGCAC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	349
XmiI	GTMKAC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.