Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

19092592 .. 19095836

Gene Structure 3245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1233400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTTGCCTGAGCGATGAGAGCTGGGTCGCCCTCCCCAAAATGCTCTCCGACGGCCTCTCTCTACCGGAAGACGACCGCCGCGACGACGACGACGACGACGACGACCAGGCCGGGTTTTTCCGGTCCGAGTCCACCGCGTACAGGTTAGAGAAGGTTTTTCCGGTCTACGCATTGGGGATTCCGAAACCCGAGTCCGACCCGGTTGGACTTGCTTCCGTTTCGGGCGACCCGATTTGGGATGCCGTCCGGGAAGAGGCCAAGTTGGAGGCGGAAAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCACATGATTGCTTAGAGCAGGCGTTGGGGTTTGTTCTCGCCAACAGACTGCAAAACCCGACGCTTTTGGCAACTCAACTGATGGATATATTTTATGATGTGATGCTGCATGATAGAGATATTCAACGATCCGTTCGCTTAGATGTGCAGGCATTTAAAGACCGTGATCCAGCCTGCTTGTCGTATTGTTCGGCCCTATTGTATCTTAAGGGCTACCATTCTTTGCAAGTACATCGAGTAGCTCATTCATTGTGGAATCAAGGACGAAAAGTATTGGCCTTGGCGTTACAAAGCCGAGTTAGTGAGGTCTTTGGAGTGGACATTCACCCAGCTGCAAAAATTGGAGAGGGAATATTGTTGGATCATGGTACTGGTGTGGTTATTGGCGAAACTGCTGTTGTAGGAAACAGAGTATCACTGATGCACGGTGTGACTTTGGGGGGAACCGGGAAGGGAATTGGTGATCGACATCCAAAAGTAGGTGACGGTGCACTAATTGGAGCCAGTGTAACTGTACTTGGGAATATCAAAATAGGTCGAGGAGCAATGATAGCTGCTGGTTCCCTTGTGCTGAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAGGTCATTGGATATGTAGACGAAATAGATCCTTCGTTAACAATGAAGCATGATGCTACCAAAGATTTTTTCGAAAATGTAGCTGTTCGGTGTAGAGATACAAGACCTGCTGGTTGGAGGTCAGAGCTCAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

358

Amino Acids

38.79

Weight (kDa)

5.48

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	79 - 182	1.4e-37	Serine acetyltransferase, N-terminal
Hexapep	PF00132	263 - 296	3.1e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1048
AccI	GTMKAC	2 cut(s)	168, 951
AccII	CGCG	2 cut(s)	84, 140
AciI	CCGC	4 cut(s)	79, 82, 138, 272
AclWI	GGATC	4 cut(s)	441, 479, 687, 956
AdeI	CACNNNGTG	1 cut(s)	748
AfaI	GTAC	4 cut(s)	143, 549, 688, 834
AfiI	CCNNNNNNNGG	4 cut(s)	144, 238, 256, 797
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	986, 1018
AluBI	AGCT	7 cut(s)	24, 297, 560, 650, 872, 1016, 1060
AluI	AGCT	7 cut(s)	24, 297, 560, 650, 872, 1016, 1060
Alw21I	GWGCWC	2 cut(s)	811, 1062
Alw44I	GTGCAC	1 cut(s)	807
AlwI	GGATC	4 cut(s)	441, 479, 687, 956
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	5 cut(s)	55, 111, 258, 510, 594
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	3 cut(s)	424, 650, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspS9I	GGNCC	2 cut(s)	126, 511
AsuC2I	CCSGG	4 cut(s)	115, 203, 251, 766
AsuHPI	GGTGA	3 cut(s)	635, 791, 812
AsuII	TTCGAA	1 cut(s)	1005
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	811
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BanII	GRGCYC	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	2 cut(s)	811, 1062
BbvI	GCAGC	3 cut(s)	411, 637, 859
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	2 cut(s)	70, 230
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	4 cut(s)	115, 203, 251, 766
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	1048
BisI	GCNGC	4 cut(s)	82, 425, 651, 873
BlsI	GCNGC	4 cut(s)	83, 426, 652, 874
Bme1390I	CCNGG	5 cut(s)	110, 115, 203, 251, 766
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	126, 511
BmiI	GGNNCC	4 cut(s)	282, 763, 820, 880
BmrFI	CCNGG	5 cut(s)	110, 115, 203, 251, 766
BmsI	GCATC	5 cut(s)	232, 321, 411, 729, 976
BpiI	GAAGAC	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	4 cut(s)	115, 203, 251, 766
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	3 cut(s)	67, 123, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	810, 840
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 238, 256, 797
Bse1I	ACTGG	2 cut(s)	694, 822
Bse3DI	GCAATG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	2 cut(s)	247, 787
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	4 cut(s)	144, 238, 256, 797
BseMI	GCAATG	1 cut(s)	870
BseNI	ACTGG	2 cut(s)	694, 822
BseRI	GAGGAG	1 cut(s)	873
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	3 cut(s)	411, 637, 859
BseYI	CCCAGC	2 cut(s)	24, 646
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	84, 140
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	5 cut(s)	57, 113, 260, 512, 596
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	811, 1062
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	7 cut(s)	68, 114, 124, 164, 203, 250, 765
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	4 cut(s)	144, 238, 256, 797
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	5 cut(s)	57, 113, 260, 512, 596
BsoBI	CYCGRG	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	1005
Bsp1286I	GDGCHC	2 cut(s)	811, 1062
Bsp143I	GATC	5 cut(s)	446, 484, 679, 781, 961
BspACI	CCGC	4 cut(s)	79, 82, 138, 272
BspANI	GGCC	5 cut(s)	57, 113, 260, 512, 596
BspFNI	CGCG	2 cut(s)	84, 140
BspLI	GGNNCC	4 cut(s)	282, 763, 820, 880
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	4 cut(s)	441, 479, 687, 956
BspT104I	TTCGAA	1 cut(s)	1005
BspTI	CTTAAG	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	694, 822
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	5 cut(s)	446, 484, 679, 781, 961
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	482, 746, 806, 832
Bst6I	CTCTTC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	524
BstBI	TTCGAA	1 cut(s)	1005
BstC8I	GCNNGC	5 cut(s)	7, 310, 339, 468, 493
BstDEI	CTNAG	3 cut(s)	11, 331, 457
BstF5I	GGATG	2 cut(s)	247, 787
BstFNI	CGCG	2 cut(s)	84, 140
BstKTI	GATC	5 cut(s)	449, 487, 682, 784, 964
BstMBI	GATC	5 cut(s)	446, 484, 679, 781, 961
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 869
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	5 cut(s)	108, 113, 201, 249, 764
BstSLI	GKGCMC	1 cut(s)	811
BstUI	CGCG	2 cut(s)	84, 140
BstV1I	GCAGC	3 cut(s)	411, 637, 859
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BsuRI	GGCC	5 cut(s)	57, 113, 260, 512, 596
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	247, 787
BtsIMutI	CAGTG	2 cut(s)	734, 829
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	5 cut(s)	7, 310, 339, 468, 493
Cfr13I	GGNCC	2 cut(s)	126, 511
CpoI	CGGWCCG	1 cut(s)	126
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	4 cut(s)	142, 548, 687, 833
CspI	CGGWCCG	1 cut(s)	126
CviAII	CATG	5 cut(s)	323, 428, 683, 913, 983
CviQI	GTAC	4 cut(s)	142, 548, 687, 833
DdeI	CTNAG	3 cut(s)	11, 331, 457
DpnI	GATC	5 cut(s)	448, 486, 681, 783, 963
DpnII	GATC	5 cut(s)	446, 484, 679, 781, 961
DraI	TTTAAA	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	1060
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	1062
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	1060
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	1060
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	5 cut(s)	326, 431, 686, 916, 986
FaiI	YATR	9 cut(s)	306, 324, 407, 414, 429, 684, 914, 948, 984
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	5 cut(s)	322, 427, 682, 912, 982
FblI	GTMKAC	2 cut(s)	168, 951
Fnu4HI	GCNGC	4 cut(s)	82, 425, 651, 873
FokI	GGATG	2 cut(s)	254, 774
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	4 cut(s)	82, 425, 651, 873
GluI	GCNGC	4 cut(s)	82, 425, 651, 873
GsaI	CCCAGC	2 cut(s)	28, 650
HaeIII	GGCC	5 cut(s)	57, 113, 260, 512, 596
HapII	CCGG	7 cut(s)	68, 114, 124, 164, 203, 250, 765
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	5 cut(s)	326, 431, 686, 916, 986
HincII	GTYRAC	1 cut(s)	972
HindII	GTYRAC	1 cut(s)	972
HinfI	GANTC	4 cut(s)	131, 181, 194, 574
HpaI	GTTAAC	1 cut(s)	972
HpaII	CCGG	7 cut(s)	68, 114, 124, 164, 203, 250, 765
HphI	GGTGA	3 cut(s)	635, 791, 812
Hpy166II	GTNNAC	6 cut(s)	135, 169, 637, 809, 952, 972
Hpy188I	TCNGA	5 cut(s)	52, 130, 186, 199, 1057
Hpy188III	TCNNGA	1 cut(s)	1063
Hpy8I	GTNNAC	6 cut(s)	135, 169, 637, 809, 952, 972
Hpy99I	CGWCG	9 cut(s)	56, 89, 92, 95, 98, 101, 104, 107, 382
HpyAV	CCTTC	3 cut(s)	148, 763, 975
HpyCH4III	ACNGT	4 cut(s)	482, 746, 806, 832
HpyCH4V	TGCA	7 cut(s)	370, 427, 466, 544, 653, 742, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 869
HpyF3I	CTNAG	3 cut(s)	11, 331, 457
Hsp92II	CATG	5 cut(s)	326, 431, 686, 916, 986
KspAI	GTTAAC	1 cut(s)	972
Kzo9I	GATC	5 cut(s)	446, 484, 679, 781, 961
LmnI	GCTCC	3 cut(s)	280, 818, 860
Lsp1109I	GCAGC	3 cut(s)	411, 637, 859
LweI	GCATC	5 cut(s)	232, 321, 411, 729, 976
MaeIII	GTNAC	4 cut(s)	603, 748, 800, 826
MalI	GATC	5 cut(s)	448, 486, 681, 783, 963
MboI	GATC	5 cut(s)	446, 484, 679, 781, 961
MboII	GAAGA	2 cut(s)	83, 266
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	2 cut(s)	811, 1062
MluCI	AATT	4 cut(s)	285, 657, 774, 813
MlyI	GAGTC	2 cut(s)	140, 203
MmeI	TCCRAC	6 cut(s)	75, 187, 222, 246, 657, 1028
MnlI	CCTC	9 cut(s)	44, 68, 250, 262, 616, 658, 851, 912, 1044
MseI	TTAA	3 cut(s)	474, 525, 971
MspA1I	CMGCKG	1 cut(s)	650
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	7 cut(s)	68, 114, 124, 164, 203, 250, 765
MspR9I	CCNGG	5 cut(s)	110, 115, 203, 251, 766
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	84, 140
MwoI	GCNNNNNNNGC	2 cut(s)	21, 869
NciI	CCSGG	4 cut(s)	115, 203, 251, 766
NdeII	GATC	5 cut(s)	446, 484, 679, 781, 961
NlaIII	CATG	5 cut(s)	326, 431, 686, 916, 986
NlaIV	GGNNCC	4 cut(s)	282, 763, 820, 880
NmeAIII	GCCGAG	1 cut(s)	638
NmuCI	GTSAC	2 cut(s)	748, 800
NspV	TTCGAA	1 cut(s)	1005
PcsI	WCGNNNNNNNCGW	6 cut(s)	81, 93, 96, 99, 102, 230
PfeI	GAWTC	2 cut(s)	181, 574
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	83, 426, 652, 874
PleI	GAGTC	2 cut(s)	139, 202
PpsI	GAGTC	2 cut(s)	139, 202
Psp124BI	GAGCTC	1 cut(s)	1062
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	2 cut(s)	24, 646
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	282, 763, 820, 880
PspPI	GGNCC	2 cut(s)	126, 511
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	4 cut(s)	143, 549, 688, 834
RsaNI	GTAC	4 cut(s)	142, 548, 687, 833
Rsr2I	CGGWCCG	1 cut(s)	126
RsrII	CGGWCCG	1 cut(s)	126
SacI	GAGCTC	1 cut(s)	1062
SaqAI	TTAA	3 cut(s)	474, 525, 971
SatI	GCNGC	4 cut(s)	82, 425, 651, 873
Sau3AI	GATC	5 cut(s)	446, 484, 679, 781, 961
Sau96I	GGNCC	2 cut(s)	126, 511
SchI	GAGTC	2 cut(s)	140, 203
ScrFI	CCNGG	5 cut(s)	110, 115, 203, 251, 766
SduI	GDGCHC	2 cut(s)	811, 1062
SfaNI	GCATC	5 cut(s)	232, 321, 411, 729, 976
SfuI	TTCGAA	1 cut(s)	1005
SinI	GGWCC	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	524, 1061
SmoI	CTYRAG	2 cut(s)	524, 1061
Sse9I	AATT	4 cut(s)	285, 657, 774, 813
SsiI	CCGC	4 cut(s)	79, 82, 138, 272
SspI	AATATT	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	1062
StyD4I	CCNGG	5 cut(s)	108, 113, 201, 249, 764
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	4 cut(s)	482, 746, 806, 832
TaqI	TCGA	4 cut(s)	553, 784, 856, 1005
TasI	AATT	4 cut(s)	285, 657, 774, 813
TatI	WGTACW	2 cut(s)	547, 832
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	181, 574
Tru1I	TTAA	3 cut(s)	474, 525, 971
Tru9I	TTAA	3 cut(s)	474, 525, 971
TscAI	CASTG	2 cut(s)	741, 829
TseFI	GTSAC	2 cut(s)	748, 800
TseI	GCWGC	3 cut(s)	424, 650, 872
Tsp45I	GTSAC	2 cut(s)	748, 800
TspDTI	ATGAA	2 cut(s)	555, 992
TspGWI	ACGGA	2 cut(s)	208, 439
TspRI	CASTG	2 cut(s)	741, 829
Vha464I	CTTAAG	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	126
XmiI	GTMKAC	2 cut(s)	168, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.