Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Forward (+)

5250415 .. 5252064

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATATTGAAACCGGCCGGCACACTACCAACAACAACTTCACCACAACCACCACCAGCAGTGCAGCAACAGAAGCAGCAGAAGGCTGAAAGGATTGAATCTTATGAAATTTTTCATCACCGAAAGGATGTGGAAGCAGTTGGATTTCACAGCAGACAGTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGATGACGAATGCGCTATGCTTAAGAAATTGGTGGTCGCAGTCCTTCTCTGTATTCCATGTCGAGTCGTTACCTACATCTACAGGAAGATGAACTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGCACGCTACCAACAACTCCACCACAATCACCACAAACAGTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTCATCACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGATTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGACGAAGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCGCTTTGTCGGCATAGTATCGATGTGAAAATAGAAAAACCTAGCAAATTGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

209

Amino Acids

23.94

Weight (kDa)

5.93

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	153 - 194	1.3e-10	Ring finger domain
zf-RING_11	PF17123	153 - 182	2.1e-08	RING-like zinc finger
zf-RING_5	PF14634	153 - 195	5.8e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	154 - 193	5.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	503
AciI	CCGC	2 cut(s)	453, 572
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	108, 408
AfaI	GTAC	1 cut(s)	530
AflII	CTTAAG	2 cut(s)	209, 509
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	4 cut(s)	10, 98, 317, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
AoxI	GGCC	2 cut(s)	15, 384
ApeKI	GCWGC	4 cut(s)	64, 76, 364, 376
ApoI	RAATTY	2 cut(s)	108, 408
Asp700I	GAANNNNTTC	2 cut(s)	111, 411
AspLEI	GCGC	2 cut(s)	203, 503
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	5 cut(s)	33, 110, 342, 410, 565
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	76, 88, 376, 388
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	1 cut(s)	268
BfrI	CTTAAG	2 cut(s)	209, 509
BisI	GCNGC	4 cut(s)	65, 77, 365, 377
BlsI	GCNGC	4 cut(s)	66, 78, 366, 378
BmgT120I	GGNCC	1 cut(s)	385
BmsI	GCATC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	528
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bse118I	RCCGGY	3 cut(s)	13, 17, 320
BseCI	ATCGAT	1 cut(s)	591
BseGI	GGATG	2 cut(s)	133, 433
BseX3I	CGGCCG	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	76, 88, 376, 388
BsgI	GTGCAG	2 cut(s)	83, 383
Bsh1236I	CGCG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	17, 386
BshVI	ATCGAT	1 cut(s)	591
BsiEI	CGRYCG	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	14, 18, 321
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	17, 386
BspACI	CCGC	2 cut(s)	453, 572
BspANI	GGCC	2 cut(s)	17, 386
BspDI	ATCGAT	1 cut(s)	591
BspFNI	CGCG	1 cut(s)	503
BspTI	CTTAAG	2 cut(s)	209, 509
BsrFI	RCCGGY	3 cut(s)	13, 17, 320
BssAI	RCCGGY	3 cut(s)	13, 17, 320
Bst4CI	ACNGT	4 cut(s)	159, 284, 361, 536
Bst6I	CTCTTC	1 cut(s)	489
BstAFI	CTTAAG	2 cut(s)	209, 509
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	19, 326
BstF5I	GGATG	2 cut(s)	133, 433
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	2 cut(s)	203, 503
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 373, 580
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	4 cut(s)	76, 88, 376, 388
BstV2I	GAAGAC	1 cut(s)	495
BstZI	CGGCCG	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	17, 386
BsuTUI	ATCGAT	1 cut(s)	591
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	2 cut(s)	133, 433
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 164, 366
Cac8I	GCNNGC	2 cut(s)	19, 326
CfoI	GCGC	2 cut(s)	203, 503
Cfr10I	RCCGGY	3 cut(s)	13, 17, 320
Cfr13I	GGNCC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	591
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	2 cut(s)	246, 308
CviJI	RGCY	4 cut(s)	17, 86, 386, 437
CviKI_1	RGCY	4 cut(s)	17, 86, 386, 437
CviQI	GTAC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	15
EagI	CGGCCG	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
EclXI	CGGCCG	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	15
FaeI	CATG	2 cut(s)	249, 311
FaiI	YATR	6 cut(s)	105, 206, 247, 309, 405, 585
FatI	CATG	2 cut(s)	245, 307
Fnu4HI	GCNGC	4 cut(s)	65, 77, 365, 377
FokI	GGATG	2 cut(s)	140, 440
Fsp4HI	GCNGC	4 cut(s)	65, 77, 365, 377
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	2 cut(s)	202, 502
GluI	GCNGC	4 cut(s)	65, 77, 365, 377
HaeIII	GGCC	2 cut(s)	17, 386
HapII	CCGG	3 cut(s)	14, 18, 321
HhaI	GCGC	2 cut(s)	203, 503
Hin1II	CATG	2 cut(s)	249, 311
Hin6I	GCGC	2 cut(s)	201, 501
HinP1I	GCGC	2 cut(s)	201, 501
HinfI	GANTC	4 cut(s)	98, 252, 398, 563
HpaII	CCGG	3 cut(s)	14, 18, 321
HphI	GGTGA	5 cut(s)	33, 110, 342, 410, 565
HpyAV	CCTTC	3 cut(s)	76, 242, 376
HpyCH4III	ACNGT	4 cut(s)	159, 284, 361, 536
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	3 cut(s)	64, 364, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 373, 580
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	249, 311
HspAI	GCGC	2 cut(s)	201, 501
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	27, 31, 69, 256, 334
Lsp1109I	GCAGC	4 cut(s)	76, 88, 376, 388
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	256, 536
MboII	GAAGA	6 cut(s)	200, 286, 311, 500, 506, 572
MluCI	AATT	4 cut(s)	108, 215, 408, 617
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	2 cut(s)	121, 421
MnlI	CCTC	2 cut(s)	178, 478
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	2 cut(s)	111, 411
MseI	TTAA	2 cut(s)	210, 510
MspA1I	CMGCKG	1 cut(s)	453
MspCI	CTTAAG	2 cut(s)	209, 509
MspI	CCGG	3 cut(s)	14, 18, 321
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	73, 373, 580
NaeI	GCCGGC	1 cut(s)	19
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	249, 311
NmuCI	GTSAC	1 cut(s)	536
PctI	GAATGC	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	2 cut(s)	111, 411
PfeI	GAWTC	3 cut(s)	98, 398, 563
PkrI	GCNGC	4 cut(s)	66, 78, 366, 378
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	385
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	210, 510
SatI	GCNGC	4 cut(s)	65, 77, 365, 377
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	261
SetI	ASST	5 cut(s)	263, 439, 530, 555, 613
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	268
SmlI	CTYRAG	2 cut(s)	209, 509
SmoI	CTYRAG	2 cut(s)	209, 509
Sse9I	AATT	4 cut(s)	108, 215, 408, 617
SsiI	CCGC	2 cut(s)	453, 572
SspMI	CTAG	1 cut(s)	612
TaaI	ACNGT	4 cut(s)	159, 284, 361, 536
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	2 cut(s)	250, 591
TasI	AATT	4 cut(s)	108, 215, 408, 617
TfiI	GAWTC	3 cut(s)	98, 398, 563
Tru1I	TTAA	2 cut(s)	210, 510
Tru9I	TTAA	2 cut(s)	210, 510
TscAI	CASTG	3 cut(s)	66, 164, 366
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	4 cut(s)	64, 76, 364, 376
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	6 cut(s)	104, 120, 293, 312, 404, 420
TspRI	CASTG	3 cut(s)	66, 164, 366
Vha464I	CTTAAG	2 cut(s)	209, 509
XapI	RAATTY	2 cut(s)	108, 408
XmnI	GAANNNNTTC	2 cut(s)	111, 411
XspI	CTAG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.