Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

9862898 .. 9865520

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG116700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCCTGCGTGACCGACGAGAGCTGGGTCGCACTGCCCAGAATGCTATCGGAGCGTTTGTCTTTGAGGGAGGAAGAGGCCGAGGAGGAGGAGGAGGAGCCCGGGTTTTTCGACTCCGAGTCCGCCGCGTACCGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTGGACGTGCAGGCGTTTAAAGAACGCGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTACTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGAGTTAGCGAGGTGTTTGGAGTGGACATTCACCCTGCTTCAAAAATTGGAGAGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCAAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAAGTTCAGAGATGCAAGGAGGGCAGACTTCAGAAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

349

Amino Acids

38.26

Weight (kDa)

5.24

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	75 - 178	1.1e-38	Serine acetyltransferase, N-terminal
Hexapep	PF00132	259 - 292	3e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	939
AccII	CGCG	2 cut(s)	128, 471
AciI	CCGC	2 cut(s)	123, 126
AclWI	GGATC	3 cut(s)	467, 675, 944
AcsI	RAATTY	1 cut(s)	986
AcuI	CTGAAG	1 cut(s)	1021
AfaI	GTAC	3 cut(s)	131, 158, 676
AfiI	CCNNNNNNNGG	3 cut(s)	132, 226, 785
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	642, 995
AhdI	GACNNNNNGTC	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	451
AluBI	AGCT	7 cut(s)	24, 285, 385, 479, 548, 860, 1004
AluI	AGCT	7 cut(s)	24, 285, 385, 479, 548, 860, 1004
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	1 cut(s)	417
Alw44I	GTGCAC	1 cut(s)	795
AlwI	GGATC	3 cut(s)	467, 675, 944
Ama87I	CYCGRG	2 cut(s)	101, 179
AoxI	GGCC	4 cut(s)	3, 78, 246, 582
ApaLI	GTGCAC	1 cut(s)	795
ApeKI	GCWGC	1 cut(s)	860
ApoI	RAATTY	1 cut(s)	986
AsiGI	ACCGGT	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	310
AsuC2I	CCSGG	3 cut(s)	102, 103, 191
AsuHPI	GGTGA	3 cut(s)	623, 779, 800
AvaI	CYCGRG	2 cut(s)	101, 179
BaeGI	GKGCMC	1 cut(s)	799
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	847
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BcnI	CCSGG	3 cut(s)	102, 103, 191
BcoDI	GTCTC	1 cut(s)	417
BisI	GCNGC	2 cut(s)	126, 861
BlsI	GCNGC	2 cut(s)	127, 862
Bme1390I	CCNGG	3 cut(s)	102, 103, 191
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmeT110I	CYCGRG	2 cut(s)	101, 179
BmgBI	CACGTC	1 cut(s)	451
BmiI	GGNNCC	4 cut(s)	99, 270, 808, 850
BmrFI	CCNGG	3 cut(s)	102, 103, 191
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	5 cut(s)	309, 402, 717, 964, 1009
BmuI	ACTGGG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	3 cut(s)	102, 103, 191
BsaJI	CCNNGG	3 cut(s)	81, 101, 585
BsaWI	WCCGGW	2 cut(s)	132, 151
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 89, 119, 642, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 226, 785
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	757, 810
BseDI	CCNNGG	3 cut(s)	81, 101, 585
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	3 cut(s)	132, 226, 785
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	757, 810
BseRI	GAGGAG	5 cut(s)	98, 101, 104, 107, 110
BseSI	GKGCMC	1 cut(s)	799
BseXI	GCAGC	1 cut(s)	847
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	2 cut(s)	128, 471
BshFI	GGCC	4 cut(s)	5, 80, 248, 584
BshTI	ACCGGT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	2 cut(s)	101, 179
BsiSI	CCGG	4 cut(s)	102, 133, 152, 191
BslFI	GGGAC	2 cut(s)	242, 872
BslI	CCNNNNNNNGG	3 cut(s)	132, 226, 785
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	242, 872
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	5, 80, 248, 584
BsoBI	CYCGRG	2 cut(s)	101, 179
Bsp1286I	GDGCHC	2 cut(s)	102, 799
Bsp143I	GATC	4 cut(s)	434, 472, 667, 949
BspACI	CCGC	2 cut(s)	123, 126
BspANI	GGCC	4 cut(s)	5, 80, 248, 584
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	128, 471
BspLI	GGNNCC	4 cut(s)	99, 270, 808, 850
BspPI	GGATC	3 cut(s)	467, 675, 944
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	757, 810
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	81, 101, 585
BssMI	GATC	4 cut(s)	434, 472, 667, 949
BssT1I	CCWWGG	1 cut(s)	585
Bst4CI	ACNGT	5 cut(s)	209, 494, 507, 558, 773
Bst6I	CTCTTC	2 cut(s)	69, 237
BstC8I	GCNNGC	4 cut(s)	7, 298, 327, 456
BstDEI	CTNAG	1 cut(s)	381
BstEII	GGTNACC	2 cut(s)	518, 767
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	2 cut(s)	128, 471
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	437, 475, 670, 952
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	4 cut(s)	434, 472, 667, 949
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 52, 451, 606, 857, 1028
BstPI	GGTNACC	2 cut(s)	518, 767
BstSCI	CCNGG	3 cut(s)	100, 101, 189
BstSLI	GKGCMC	1 cut(s)	799
BstUI	CGCG	2 cut(s)	128, 471
BstV1I	GCAGC	1 cut(s)	847
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
BsuRI	GGCC	4 cut(s)	5, 80, 248, 584
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	32, 554, 817
Cac8I	GCNNGC	4 cut(s)	7, 298, 327, 456
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	132
Cfr9I	CCCGGG	1 cut(s)	101
CseI	GACGC	2 cut(s)	239, 579
Csp6I	GTAC	3 cut(s)	130, 157, 675
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	8 cut(s)	311, 416, 524, 671, 853, 901, 964, 971
CviQI	GTAC	3 cut(s)	130, 157, 675
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	4 cut(s)	436, 474, 669, 951
DpnII	GATC	4 cut(s)	434, 472, 667, 949
DraI	TTTAAA	1 cut(s)	463
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	69, 237
Eam1105I	GACNNNNNGTC	1 cut(s)	118
EarI	CTCTTC	2 cut(s)	69, 237
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	1021
Eco88I	CYCGRG	2 cut(s)	101, 179
Eco91I	GGTNACC	2 cut(s)	518, 767
EcoO65I	GGTNACC	2 cut(s)	518, 767
EcoT14I	CCWWGG	1 cut(s)	585
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	8 cut(s)	314, 419, 527, 674, 856, 904, 967, 974
FaqI	GGGAC	2 cut(s)	242, 872
FatI	CATG	8 cut(s)	310, 415, 523, 670, 852, 900, 963, 970
FblI	GTMKAC	1 cut(s)	939
Fnu4HI	GCNGC	2 cut(s)	126, 861
FokI	GGATG	1 cut(s)	762
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	126, 861
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	2 cut(s)	126, 861
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	4 cut(s)	5, 80, 248, 584
HapII	CCGG	4 cut(s)	102, 133, 152, 191
HgaI	GACGC	2 cut(s)	239, 579
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	8 cut(s)	314, 419, 527, 674, 856, 904, 967, 974
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	5 cut(s)	113, 119, 169, 182, 562
HpaII	CCGG	4 cut(s)	102, 133, 152, 191
HphI	GGTGA	3 cut(s)	623, 779, 800
Hpy166II	GTNNAC	4 cut(s)	157, 625, 797, 940
Hpy188I	TCNGA	7 cut(s)	52, 118, 174, 187, 214, 1016, 1040
Hpy8I	GTNNAC	4 cut(s)	157, 625, 797, 940
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	136, 259, 785, 963
HpyCH4III	ACNGT	5 cut(s)	209, 494, 507, 558, 773
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	9 cut(s)	347, 358, 415, 454, 532, 730, 797, 815, 1022
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 52, 451, 606, 857, 1028
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	8 cut(s)	314, 419, 527, 674, 856, 904, 967, 974
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	434, 472, 667, 949
LmnI	GCTCC	5 cut(s)	52, 97, 268, 806, 848
Lsp1109I	GCAGC	1 cut(s)	847
LweI	GCATC	5 cut(s)	309, 402, 717, 964, 1009
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	10, 518, 736, 767
MalI	GATC	4 cut(s)	436, 474, 669, 951
MboI	GATC	4 cut(s)	434, 472, 667, 949
MboII	GAAGA	2 cut(s)	86, 254
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	2 cut(s)	102, 799
MluCI	AATT	4 cut(s)	273, 645, 762, 986
MlyI	GAGTC	4 cut(s)	107, 128, 191, 571
MmeI	TCCRAC	4 cut(s)	117, 210, 234, 645
Mph1103I	ATGCAT	1 cut(s)	417
MseI	TTAA	4 cut(s)	462, 879, 959, 1008
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	4 cut(s)	102, 133, 152, 191
MspR9I	CCNGG	3 cut(s)	102, 103, 191
Mva1269I	GAATGC	1 cut(s)	48
MvnI	CGCG	2 cut(s)	128, 471
MwoI	GCNNNNNNNGC	6 cut(s)	43, 52, 451, 606, 857, 1028
NciI	CCSGG	3 cut(s)	102, 103, 191
NdeII	GATC	4 cut(s)	434, 472, 667, 949
NlaIII	CATG	8 cut(s)	314, 419, 527, 674, 856, 904, 967, 974
NlaIV	GGNNCC	4 cut(s)	99, 270, 808, 850
NmeAIII	GCCGAG	3 cut(s)	106, 421, 626
NmuCI	GTSAC	2 cut(s)	10, 767
NsiI	ATGCAT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	127, 862
PleI	GAGTC	4 cut(s)	107, 127, 190, 570
PpsI	GAGTC	4 cut(s)	107, 127, 190, 570
PspEI	GGTNACC	2 cut(s)	518, 767
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	99, 270, 808, 850
PsuI	RGATCY	1 cut(s)	949
PsyI	GACNNNGTC	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	3 cut(s)	131, 158, 676
RsaNI	GTAC	3 cut(s)	130, 157, 675
SaqAI	TTAA	4 cut(s)	462, 879, 959, 1008
SatI	GCNGC	2 cut(s)	126, 861
Sau3AI	GATC	4 cut(s)	434, 472, 667, 949
SchI	GAGTC	4 cut(s)	107, 128, 191, 571
ScrFI	CCNGG	3 cut(s)	102, 103, 191
SduI	GDGCHC	2 cut(s)	102, 799
SfaNI	GCATC	5 cut(s)	309, 402, 717, 964, 1009
SmaI	CCCGGG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	4 cut(s)	273, 645, 762, 986
SsiI	CCGC	2 cut(s)	123, 126
StyD4I	CCNGG	3 cut(s)	100, 101, 189
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	5 cut(s)	209, 494, 507, 558, 773
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	111, 541
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	273, 645, 762, 986
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	4 cut(s)	462, 879, 959, 1008
Tru9I	TTAA	4 cut(s)	462, 879, 959, 1008
TscAI	CASTG	3 cut(s)	39, 561, 817
TseFI	GTSAC	2 cut(s)	10, 767
TseI	GCWGC	1 cut(s)	860
Tsp45I	GTSAC	2 cut(s)	10, 767
TspDTI	ATGAA	3 cut(s)	711, 945, 980
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	3 cut(s)	39, 561, 817
Tth111I	GACNNNGTC	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	795
XapI	RAATTY	1 cut(s)	986
XmaI	CCCGGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	939
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.