Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

10076332 .. 10079248

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCTGCGTGACCGACGAGAGTGGGTCGCGCTGCCCAGAATGCTATCGGAGCGTTTGTCTTGAGGGAGGAAGAGGCCGAGGAGGAGGAGGAGCCCGGGTTTTCGACTCCGAGTCCGCCGCGTACAGGTTGGAGAAGGTTTTTCCGGTGTACGCATTGGGGATTCAGAAACCCGAGTCCGACCCGGTTGTTGTGGCTGACAGTTCGGACGACCCGATTTGGGACGCTGTCAGGGAAGAGGCCAAGTTGGAGGCAGAGAAGGAGCCAATTTTGAGTAGCTTCTTGTATGCGAGCATCTTGGCGCATGATTGTTTAGAGCAGGCGTTGGGGTTTGTTCTTGCAAACAGGTTGCAGAACCCGACACTTCTGGCTACTCAGCTGATGGATATATTCACTAATGTAATGATGCATGACAGAGACATTCAGCGATCTGCTCGGCTAGACGTGCAGGCGTTTAAAGAACGCGATCCAGCTTGTTTGTCTTACTGTTCGGCTCTATTGTATCTCAAGGGTTACCATGCTCTGCAAGTATATCGAGTAGCTCATTCACTGTGGAGTCAAGGACGCAAAGTATTGGCCTTGGCATTACAAAGCCGATTAGCGAGGTGTTTGGAGTGGACATTCACCCTGGGAGTATTGTTGGATCATGGTACGGGTGTGGTTATTGGGGAAACTGCTGTTATAGGAAACAGAGTTTCATTGATGCAGGGTGTAACTTTGGGAGGAACTGGGAAAGAAATTGGTGACCGTCATCCAAAAATAGGTGAAGGTGCACTAATAGGAGCCAGTGCAACTATACTTGGGAATATAAAAATAGGTCAAGGAGCCATGATAGCTGCTTGTTCCCTTGTGCTTAAAGATGTCCCTCCACACAGCATGGTGGCAGGAATACCAGCAAAAGTGATTGGATATGTAGACGAAAAAGATCCTTCATTAACCATGAAGCATGATGCTACCAAAGAATTTTTTGAAAATGTAGCTGTTAAGTTCAGAGATGCAAGGTCTGCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

337

Amino Acids

36.42

Weight (kDa)

6.09

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SATase_N	PF06426	73 - 176	1e-38	Serine acetyltransferase, N-terminal
Hexapep	PF00132	251 - 284	2.9e-08	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	915
AccII	CGCG	3 cut(s)	31, 122, 465
AciI	CCGC	2 cut(s)	117, 120
AclWI	GGATC	3 cut(s)	461, 651, 920
AcsI	RAATTY	1 cut(s)	962
AfaI	GTAC	3 cut(s)	125, 152, 652
AfiI	CCNNNNNNNGG	3 cut(s)	126, 220, 761
AgsI	TTSAA	1 cut(s)	971
AhdI	GACNNNNNGTC	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	6 cut(s)	279, 379, 473, 542, 836, 980
AluI	AGCT	6 cut(s)	279, 379, 473, 542, 836, 980
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	411
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	3 cut(s)	461, 651, 920
Ama87I	CYCGRG	2 cut(s)	96, 173
AoxI	GGCC	4 cut(s)	3, 76, 240, 576
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	33, 836
ApoI	RAATTY	1 cut(s)	962
AspLEI	GCGC	2 cut(s)	33, 304
AsuC2I	CCSGG	3 cut(s)	97, 98, 185
AsuHPI	GGTGA	3 cut(s)	616, 755, 776
AvaI	CYCGRG	2 cut(s)	96, 173
BaeGI	GKGCMC	1 cut(s)	775
BaeI	ACNNNNGTAYC	2 cut(s)	642, 675
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	2 cut(s)	20, 823
BccI	CCATC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	629
BcnI	CCSGG	3 cut(s)	97, 98, 185
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	3 cut(s)	34, 120, 837
BlsI	GCNGC	3 cut(s)	35, 121, 838
Bme1390I	CCNGG	4 cut(s)	97, 98, 185, 629
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	96, 173
BmgBI	CACGTC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	94, 264, 784, 826
BmrFI	CCNGG	4 cut(s)	97, 98, 185, 629
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	5 cut(s)	303, 396, 693, 940, 985
BmuI	ACTGGG	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	83, 491
BpuMI	CCSGG	3 cut(s)	97, 98, 185
BsaJI	CCNNGG	5 cut(s)	79, 96, 579, 627, 628
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 84, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 220, 761
Bse1I	ACTGG	2 cut(s)	733, 786
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	5 cut(s)	79, 96, 579, 627, 628
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	3 cut(s)	126, 220, 761
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	733, 786
BseRI	GAGGAG	4 cut(s)	96, 99, 102, 105
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	2 cut(s)	20, 823
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	3 cut(s)	31, 122, 465
BshFI	GGCC	4 cut(s)	5, 78, 242, 578
BsiHKAI	GWGCWC	1 cut(s)	775
BsiHKCI	CYCGRG	2 cut(s)	96, 173
BsiSI	CCGG	3 cut(s)	97, 146, 185
BslFI	GGGAC	2 cut(s)	236, 848
BslI	CCNNNNNNNGG	3 cut(s)	126, 220, 761
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	236, 848
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	4 cut(s)	5, 78, 242, 578
BsoBI	CYCGRG	2 cut(s)	96, 173
Bsp1286I	GDGCHC	2 cut(s)	97, 775
Bsp143I	GATC	4 cut(s)	428, 466, 643, 925
BspACI	CCGC	2 cut(s)	117, 120
BspANI	GGCC	4 cut(s)	5, 78, 242, 578
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	3 cut(s)	31, 122, 465
BspLI	GGNNCC	4 cut(s)	94, 264, 784, 826
BspPI	GGATC	3 cut(s)	461, 651, 920
BsrI	ACTGG	2 cut(s)	733, 786
BssECI	CCNNGG	5 cut(s)	79, 96, 579, 627, 628
BssMI	GATC	4 cut(s)	428, 466, 643, 925
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	4 cut(s)	203, 488, 552, 749
Bst6I	CTCTTC	2 cut(s)	67, 231
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstC8I	GCNNGC	4 cut(s)	7, 292, 321, 450
BstDEI	CTNAG	1 cut(s)	375
BstEII	GGTNACC	2 cut(s)	512, 743
BstF5I	GGATG	1 cut(s)	751
BstFNI	CGCG	3 cut(s)	31, 122, 465
BstHHI	GCGC	2 cut(s)	33, 304
BstKTI	GATC	4 cut(s)	431, 469, 646, 928
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	4 cut(s)	428, 466, 643, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 51, 445, 833, 1004
BstNI	CCWGG	1 cut(s)	629
BstPI	GGTNACC	2 cut(s)	512, 743
BstSCI	CCNGG	4 cut(s)	95, 96, 183, 627
BstSLI	GKGCMC	1 cut(s)	775
BstUI	CGCG	3 cut(s)	31, 122, 465
BstV1I	GCAGC	2 cut(s)	20, 823
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BsuRI	GGCC	4 cut(s)	5, 78, 242, 578
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	548, 793
Cac8I	GCNNGC	4 cut(s)	7, 292, 321, 450
CfoI	GCGC	2 cut(s)	33, 304
Cfr9I	CCCGGG	1 cut(s)	96
CseI	GACGC	2 cut(s)	233, 573
Csp6I	GTAC	3 cut(s)	124, 151, 651
CviAII	CATG	8 cut(s)	305, 410, 518, 647, 829, 877, 940, 947
CviQI	GTAC	3 cut(s)	124, 151, 651
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	4 cut(s)	430, 468, 645, 927
DpnII	GATC	4 cut(s)	428, 466, 643, 925
DraI	TTTAAA	1 cut(s)	457
DriI	GACNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	67, 231
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	2 cut(s)	67, 231
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	97
Eco88I	CYCGRG	2 cut(s)	96, 173
Eco91I	GGTNACC	2 cut(s)	512, 743
EcoO65I	GGTNACC	2 cut(s)	512, 743
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	579
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	8 cut(s)	308, 413, 521, 650, 832, 880, 943, 950
FaqI	GGGAC	2 cut(s)	236, 848
FatI	CATG	8 cut(s)	304, 409, 517, 646, 828, 876, 939, 946
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	3 cut(s)	34, 120, 837
FokI	GGATG	1 cut(s)	738
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	3 cut(s)	34, 120, 837
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	32, 303
GluI	GCNGC	3 cut(s)	34, 120, 837
HaeIII	GGCC	4 cut(s)	5, 78, 242, 578
HapII	CCGG	3 cut(s)	97, 146, 185
HgaI	GACGC	2 cut(s)	233, 573
HhaI	GCGC	2 cut(s)	33, 304
Hin1II	CATG	8 cut(s)	308, 413, 521, 650, 832, 880, 943, 950
Hin6I	GCGC	2 cut(s)	31, 302
HinP1I	GCGC	2 cut(s)	31, 302
HinfI	GANTC	5 cut(s)	107, 113, 163, 176, 556
HpaII	CCGG	3 cut(s)	97, 146, 185
HphI	GGTGA	3 cut(s)	616, 755, 776
Hpy166II	GTNNAC	4 cut(s)	151, 618, 773, 916
Hpy188I	TCNGA	6 cut(s)	51, 112, 168, 181, 208, 992
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	4 cut(s)	151, 618, 773, 916
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	130, 253, 761, 939
HpyCH4III	ACNGT	4 cut(s)	203, 488, 552, 749
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	9 cut(s)	341, 352, 409, 448, 526, 706, 773, 791, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 51, 445, 833, 1004
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	444
Hsp92II	CATG	8 cut(s)	308, 413, 521, 650, 832, 880, 943, 950
HspAI	GCGC	2 cut(s)	31, 302
Kzo9I	GATC	4 cut(s)	428, 466, 643, 925
LmnI	GCTCC	5 cut(s)	51, 92, 262, 782, 824
Lsp1109I	GCAGC	2 cut(s)	20, 823
LweI	GCATC	5 cut(s)	303, 396, 693, 940, 985
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	10, 512, 712, 743
MalI	GATC	4 cut(s)	430, 468, 645, 927
MboI	GATC	4 cut(s)	428, 466, 643, 925
MboII	GAAGA	2 cut(s)	84, 248
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	2 cut(s)	97, 775
MluCI	AATT	3 cut(s)	267, 738, 962
MlyI	GAGTC	4 cut(s)	101, 122, 185, 565
MmeI	TCCRAC	4 cut(s)	111, 204, 228, 621
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	4 cut(s)	456, 855, 935, 984
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	3 cut(s)	97, 146, 185
MspR9I	CCNGG	4 cut(s)	97, 98, 185, 629
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	3 cut(s)	31, 122, 465
MwoI	GCNNNNNNNGC	5 cut(s)	42, 51, 445, 833, 1004
NciI	CCSGG	3 cut(s)	97, 98, 185
NdeII	GATC	4 cut(s)	428, 466, 643, 925
NlaIII	CATG	8 cut(s)	308, 413, 521, 650, 832, 880, 943, 950
NlaIV	GGNNCC	4 cut(s)	94, 264, 784, 826
NmeAIII	GCCGAG	2 cut(s)	104, 415
NmuCI	GTSAC	2 cut(s)	10, 743
NsiI	ATGCAT	1 cut(s)	411
PasI	CCCWGGG	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	35, 121, 838
PleI	GAGTC	4 cut(s)	101, 121, 184, 564
PpsI	GAGTC	4 cut(s)	101, 121, 184, 564
Psp6I	CCWGG	1 cut(s)	627
PspEI	GGTNACC	2 cut(s)	512, 743
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	4 cut(s)	94, 264, 784, 826
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	3 cut(s)	125, 152, 652
RsaNI	GTAC	3 cut(s)	124, 151, 651
SaqAI	TTAA	4 cut(s)	456, 855, 935, 984
SatI	GCNGC	3 cut(s)	34, 120, 837
Sau3AI	GATC	4 cut(s)	428, 466, 643, 925
SchI	GAGTC	4 cut(s)	101, 122, 185, 565
ScrFI	CCNGG	4 cut(s)	97, 98, 185, 629
SduI	GDGCHC	2 cut(s)	97, 775
SfaNI	GCATC	5 cut(s)	303, 396, 693, 940, 985
SmaI	CCCGGG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	62, 506
SmoI	CTYRAG	2 cut(s)	62, 506
Sse9I	AATT	3 cut(s)	267, 738, 962
SsiI	CCGC	2 cut(s)	117, 120
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	95, 96, 183, 627
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	4 cut(s)	203, 488, 552, 749
TaiI	ACGT	1 cut(s)	447
TaqI	TCGA	2 cut(s)	105, 535
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	267, 738, 962
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	4 cut(s)	456, 855, 935, 984
Tru9I	TTAA	4 cut(s)	456, 855, 935, 984
TscAI	CASTG	2 cut(s)	555, 793
TseFI	GTSAC	2 cut(s)	10, 743
TseI	GCWGC	2 cut(s)	33, 836
Tsp45I	GTSAC	2 cut(s)	10, 743
TspDTI	ATGAA	3 cut(s)	687, 921, 956
TspMI	CCCGGG	1 cut(s)	96
TspRI	CASTG	2 cut(s)	555, 793
Tth111I	GACNNNGTC	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	771
XapI	RAATTY	1 cut(s)	962
XmaI	CCCGGG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	915
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.