Rmu_sc0004220.1_g000005

golgin-97, RanBP2alpha,Imh1p and p230/golgin-245

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004220.1
Physical Location & Seq
Forward (+)
14688 .. 18324
3637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004220.1_g000005.1.cds

Sequence Viewer

Length: 1413 bp
atggtttcgaccattgcattgcaggcagagaaggagccaattttgagtagcttcttgtacgcgagcatcttggcgcatgattgtttagagcaggcgttggggtttgttcttgcaaacaggttgcagaacccgacacttctggctactcagctgatggatatattcactaatgtaatgatgcatgacagagacattcagcgatctgctcggctggacgtgcaggcgtttaaagaacgtgatccagcttgtttgtcttactgttcggctctactgtatctcaagggttaccatgctctgcaagtatatcgagtagctcattcactgtggagccaaggacgcaaagtattggccttggcattacaaagccgagttagcgaggtgtttggagtggacattcaccctgttgttcaggagaaagaaaaggagagctgggaagctgcctctcggggactgaaaacaaagctggaagtcgctgagagcaatcggatatgtgctgaaattgaagtagccaaaatgagaagtcagctggaatcagaggtgtctgcacaaacccgaatgcttgatgcaagagatgctgaacttgcaactgccaaggaggagatcaaccgccttaaaaatgaattttcttcttacaaagtacgtgctcatgcacttctccaaaagaaggatgcagatctagctgcagctaaagactctgaacaagttacagctcttgaggaagcactaaaagaagctgaaaaagaagtttcgtctctgagtgctgaaagagataaggcccttcaggatcttcaggatgccttgactaattataataaagaactagcagaaagagatgcagctcttaatgataccatgcagcagatcaagagcttagaaaaaaagctcgagtctactaatgcccatcaccgatccgccaaagaagcatgggaagttaaccttagtaatttggaagaaacatggcgggcaagatgtgaaacattaagagctcaaaacgaagcatcttctggagaagacataaaaaaagaattggaagagctcaaattacggtataaaaaattgaaggaagaacacagttcatttcgtgatcttgctgatagaatgatggaggagaaggacaaagaaatttctagacttgtagatgataataagaaccttcatcaatctttggagtcaagaccaaaggttgatcataacgataattatagcacaggcatgtataaacaggatccatcaagtttaagcacctctgcgttagaacagcagattctgattctggcaaggcaacaagcgcaaagagaggaagagctagcacagtcacagaggcacattttagcgcttcaagaggaaattgaggagctggagcatgaaaatcgtctgcatagccaacaggtatcaagaagcctggatatttaa

Protein Analysis

470

Amino Acids

53.68

Weight (kDa)

5.39

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
AccI GTMKAC 1 cut(s) 890
AccII CGCG 1 cut(s) 62
AciI CCGC 3 cut(s) 607, 912, 961
AclWI GGATC 5 cut(s) 233, 792, 903, 1220, 1233
AcsI RAATTY 2 cut(s) 620, 1122
AcuI CTGAAG 2 cut(s) 764, 773
AfaI GTAC 2 cut(s) 59, 639
AfeI AGCGCT 1 cut(s) 1335
AfiI CCNNNNNNNGG 1 cut(s) 664
AgsI TTSAA 3 cut(s) 503, 1060, 1340
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 1401
Alw21I GWGCWC 3 cut(s) 646, 988, 1038
Alw26I GTCTC 2 cut(s) 183, 756
AlwI GGATC 5 cut(s) 233, 792, 903, 1220, 1233
AlwNI CAGNNNCTG 1 cut(s) 1267
Ama87I CYCGRG 2 cut(s) 444, 884
Aor51HI AGCGCT 1 cut(s) 1335
AoxI GGCC 2 cut(s) 348, 774
ApeKI GCWGC 5 cut(s) 437, 680, 683, 836, 856
ApoI RAATTY 2 cut(s) 620, 1122
AspLEI GCGC 3 cut(s) 76, 1291, 1336
AspS9I GGNCC 1 cut(s) 775
AsuHPI GGTGA 2 cut(s) 389, 896
AsuNHI GCTAGC 1 cut(s) 1306
AvaI CYCGRG 2 cut(s) 444, 884
BamHI GGATCC 1 cut(s) 1225
BanII GRGCYC 2 cut(s) 988, 1038
BbsI GAAGAC 1 cut(s) 1017
Bbv12I GWGCWC 3 cut(s) 646, 988, 1038
BbvI GCAGC 5 cut(s) 424, 667, 695, 848, 868
BccI CCATC 4 cut(s) 148, 909, 1096, 1237
BcgI CGANNNNNNTGC 4 cut(s) 287, 321, 1352, 1386
BciT130I CCWGG 1 cut(s) 1403
BclI TGATCA 1 cut(s) 1186
BcoDI GTCTC 2 cut(s) 183, 756
BfaI CTAG 4 cut(s) 677, 821, 1128, 1307
BfmI CTRYAG 1 cut(s) 681
BfoI RGCGCY 1 cut(s) 1337
BglII AGATCT 1 cut(s) 673
BisI GCNGC 5 cut(s) 438, 681, 684, 837, 857
BlsI GCNGC 5 cut(s) 439, 682, 685, 838, 858
Bme1390I CCNGG 1 cut(s) 1403
BmeT110I CYCGRG 2 cut(s) 444, 884
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 775
BmiI GGNNCC 3 cut(s) 36, 329, 1227
BmrFI CCNGG 1 cut(s) 1403
BmsI GCATC 8 cut(s) 75, 168, 553, 562, 658, 784, 823, 1007
BmtI GCTAGC 1 cut(s) 1310
BpiI GAAGAC 1 cut(s) 1017
BpmI CTGGAG 2 cut(s) 1026, 1379
BpuEI CTTGAG 2 cut(s) 263, 734
BsaAI YACGTR 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 331, 351, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse3DI GCAATG 2 cut(s) 12, 17
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 1 cut(s) 1403
BseDI CCNNGG 3 cut(s) 331, 351, 591
BseGI GGATG 2 cut(s) 673, 799
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 2 cut(s) 12, 17
BseMII CTCAG 3 cut(s) 161, 465, 746
BseRI GAGGAG 3 cut(s) 611, 1121, 1367
BseXI GCAGC 5 cut(s) 424, 667, 695, 848, 868
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 2 cut(s) 239, 528
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 350, 776
BsiHKAI GWGCWC 3 cut(s) 646, 988, 1038
BsiHKCI CYCGRG 2 cut(s) 444, 884
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 2 cut(s) 183, 756
BsmBI CGTCTC 1 cut(s) 756
BsmFI GGGAC 1 cut(s) 462
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 2 cut(s) 350, 776
BsoBI CYCGRG 2 cut(s) 444, 884
Bsp1286I GDGCHC 3 cut(s) 646, 988, 1038
BspACI CCGC 3 cut(s) 607, 912, 961
BspANI GGCC 2 cut(s) 350, 776
BspCNI CTCAG 3 cut(s) 160, 466, 747
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 3 cut(s) 36, 329, 1227
BspMAI CTGCAG 1 cut(s) 685
BspOI GCTAGC 1 cut(s) 1310
BspPI GGATC 5 cut(s) 233, 792, 903, 1220, 1233
BspQI GCTCTTC 2 cut(s) 1026, 1296
BsrDI GCAATG 2 cut(s) 12, 17
BssECI CCNNGG 3 cut(s) 331, 351, 591
BssT1I CCWWGG 3 cut(s) 331, 351, 591
Bst2UI CCWGG 1 cut(s) 1403
Bst4CI ACNGT 6 cut(s) 260, 273, 324, 1047, 1073, 1314
Bst6I CTCTTC 2 cut(s) 1026, 1296
BstAPI GCANNNNNTGC 1 cut(s) 572
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 6 cut(s) 24, 64, 93, 222, 963, 1308
BstDEI CTNAG 5 cut(s) 147, 474, 755, 871, 938
BstEII GGTNACC 1 cut(s) 284
BstF5I GGATG 2 cut(s) 673, 799
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 1337
BstHHI GCGC 3 cut(s) 76, 1291, 1336
BstMAI GTCTC 2 cut(s) 183, 756
BstMWI GCNNNNNNNGC 9 cut(s) 23, 217, 336, 372, 572, 581, 677, 920, 1288
BstNI CCWGG 1 cut(s) 1403
BstNSI RCATGY 1 cut(s) 1216
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 1401
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 5 cut(s) 424, 667, 695, 848, 868
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 3 cut(s) 673, 784, 1225
BstYI RGATCY 3 cut(s) 673, 784, 1225
BsuRI GGCC 2 cut(s) 350, 776
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 673, 799
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 6 cut(s) 24, 64, 93, 222, 963, 1308
CaiI CAGNNNCTG 1 cut(s) 1267
CfoI GCGC 3 cut(s) 76, 1291, 1336
Cfr13I GGNCC 1 cut(s) 775
CseI GACGC 1 cut(s) 345
Csp6I GTAC 2 cut(s) 58, 638
CviAII CATG 9 cut(s) 77, 182, 290, 647, 853, 924, 957, 1213, 1364
CviQI GTAC 2 cut(s) 58, 638
DdeI CTNAG 5 cut(s) 147, 474, 755, 871, 938
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 1026, 1296
EarI CTCTTC 2 cut(s) 1026, 1296
EciI GGCGGA 1 cut(s) 901
Ecl136II GAGCTC 2 cut(s) 986, 1036
Eco130I CCWWGG 3 cut(s) 331, 351, 591
Eco24I GRGCYC 2 cut(s) 988, 1038
Eco47III AGCGCT 1 cut(s) 1335
Eco53kI GAGCTC 2 cut(s) 986, 1036
Eco57I CTGAAG 2 cut(s) 764, 773
Eco88I CYCGRG 2 cut(s) 444, 884
Eco91I GGTNACC 1 cut(s) 284
EcoICRI GAGCTC 2 cut(s) 986, 1036
EcoO109I RGGNCCY 1 cut(s) 775
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 1401
EcoT14I CCWWGG 3 cut(s) 331, 351, 591
EcoT22I ATGCAT 1 cut(s) 183
EcoT38I GRGCYC 2 cut(s) 988, 1038
ErhI CCWWGG 3 cut(s) 331, 351, 591
Esp3I CGTCTC 1 cut(s) 756
FaeI CATG 9 cut(s) 80, 185, 293, 650, 856, 927, 960, 1216, 1367
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 1 cut(s) 462
FatI CATG 9 cut(s) 76, 181, 289, 646, 852, 923, 956, 1212, 1363
FauI CCCGC 1 cut(s) 954
FbaI TGATCA 1 cut(s) 1186
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 5 cut(s) 438, 681, 684, 837, 857
FokI GGATG 2 cut(s) 680, 806
FriOI GRGCYC 2 cut(s) 988, 1038
Fsp4HI GCNGC 5 cut(s) 438, 681, 684, 837, 857
FspBI CTAG 4 cut(s) 677, 821, 1128, 1307
GlaI GCGC 3 cut(s) 75, 1290, 1335
GluI GCNGC 5 cut(s) 438, 681, 684, 837, 857
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 2 cut(s) 1026, 1379
HaeII RGCGCY 1 cut(s) 1337
HaeIII GGCC 2 cut(s) 350, 776
HgaI GACGC 1 cut(s) 345
HhaI GCGC 3 cut(s) 76, 1291, 1336
Hin1II CATG 9 cut(s) 80, 185, 293, 650, 856, 927, 960, 1216, 1367
Hin6I GCGC 3 cut(s) 74, 1289, 1334
HinP1I GCGC 3 cut(s) 74, 1289, 1334
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HinfI GANTC 6 cut(s) 530, 692, 887, 1169, 1264, 1270
HpaI GTTAAC 1 cut(s) 934
HphI GGTGA 2 cut(s) 389, 896
Hpy166II GTNNAC 3 cut(s) 391, 891, 934
Hpy188I TCNGA 5 cut(s) 486, 535, 697, 756, 1269
Hpy8I GTNNAC 3 cut(s) 391, 891, 934
HpyAV CCTTC 6 cut(s) 25, 658, 788, 1054, 1105, 1163
HpyCH4III ACNGT 6 cut(s) 260, 273, 324, 1047, 1073, 1314
HpyCH4IV ACGT 3 cut(s) 216, 235, 640
HpyF10VI GCNNNNNNNGC 9 cut(s) 23, 217, 336, 372, 572, 581, 677, 920, 1288
HpyF3I CTNAG 5 cut(s) 147, 474, 755, 871, 938
HpySE526I ACGT 3 cut(s) 216, 235, 640
Hsp92II CATG 9 cut(s) 80, 185, 293, 650, 856, 927, 960, 1216, 1367
HspAI GCGC 3 cut(s) 74, 1289, 1334
Ksp22I TGATCA 1 cut(s) 1186
KspAI GTTAAC 1 cut(s) 934
LguI GCTCTTC 2 cut(s) 1026, 1296
LmnI GCTCC 4 cut(s) 34, 327, 1354, 1360
Lsp1109I GCAGC 5 cut(s) 424, 667, 695, 848, 868
LweI GCATC 8 cut(s) 75, 168, 553, 562, 658, 784, 823, 1007
MaeI CTAG 4 cut(s) 677, 821, 1128, 1307
MaeII ACGT 3 cut(s) 216, 235, 640
MaeIII GTNAC 3 cut(s) 284, 703, 1314
MboII GAAGA 8 cut(s) 618, 779, 962, 993, 1022, 1043, 1076, 1313
MflI RGATCY 3 cut(s) 673, 784, 1225
MhlI GDGCHC 3 cut(s) 646, 988, 1038
MlyI GAGTC 3 cut(s) 686, 896, 1178
Mph1103I ATGCAT 1 cut(s) 183
MseI TTAA 7 cut(s) 228, 612, 843, 933, 980, 1238, 1411
MslI CAYNNNNRTG 1 cut(s) 1211
MspA1I CMGCKG 2 cut(s) 151, 526
MspR9I CCNGG 1 cut(s) 1403
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 1 cut(s) 1403
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 9 cut(s) 23, 217, 336, 372, 572, 581, 677, 920, 1288
NheI GCTAGC 1 cut(s) 1306
NlaIII CATG 9 cut(s) 80, 185, 293, 650, 856, 927, 960, 1216, 1367
NlaIV GGNNCC 3 cut(s) 36, 329, 1227
NmeAIII GCCGAG 2 cut(s) 187, 392
NmuCI GTSAC 1 cut(s) 1314
NsiI ATGCAT 1 cut(s) 183
NspI RCATGY 1 cut(s) 1216
PaeR7I CTCGAG 1 cut(s) 884
PciSI GCTCTTC 2 cut(s) 1026, 1296
PctI GAATGC 1 cut(s) 561
PfeI GAWTC 3 cut(s) 530, 1264, 1270
PkrI GCNGC 5 cut(s) 439, 682, 685, 838, 858
PleI GAGTC 3 cut(s) 686, 895, 1177
PpsI GAGTC 3 cut(s) 686, 895, 1177
Ppu21I YACGTR 1 cut(s) 641
PsiI TTATAA 1 cut(s) 810
Psp124BI GAGCTC 2 cut(s) 988, 1038
Psp6I CCWGG 1 cut(s) 1401
PspEI GGTNACC 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 1 cut(s) 1401
PspN4I GGNNCC 3 cut(s) 36, 329, 1227
PspPI GGNCC 1 cut(s) 775
PspXI VCTCGAGB 1 cut(s) 884
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 1267
PsuI RGATCY 3 cut(s) 673, 784, 1225
PvuII CAGCTG 2 cut(s) 151, 526
RsaI GTAC 2 cut(s) 59, 639
RsaNI GTAC 2 cut(s) 58, 638
RseI CAYNNNNRTG 1 cut(s) 1211
SacI GAGCTC 2 cut(s) 988, 1038
SapI GCTCTTC 2 cut(s) 1026, 1296
SaqAI TTAA 7 cut(s) 228, 612, 843, 933, 980, 1238, 1411
SatI GCNGC 5 cut(s) 438, 681, 684, 837, 857
Sau96I GGNCC 1 cut(s) 775
SchI GAGTC 3 cut(s) 686, 896, 1178
ScrFI CCNGG 1 cut(s) 1403
SduI GDGCHC 3 cut(s) 646, 988, 1038
SfaNI GCATC 8 cut(s) 75, 168, 553, 562, 658, 784, 823, 1007
SfcI CTRYAG 1 cut(s) 681
Sfr274I CTCGAG 1 cut(s) 884
SlaI CTCGAG 1 cut(s) 884
SmiMI CAYNNNNRTG 1 cut(s) 1211
SmlI CTYRAG 3 cut(s) 278, 713, 884
SmoI CTYRAG 3 cut(s) 278, 713, 884
SsiI CCGC 3 cut(s) 607, 912, 961
SspMI CTAG 4 cut(s) 677, 821, 1128, 1307
SstI GAGCTC 2 cut(s) 988, 1038
StyD4I CCNGG 1 cut(s) 1401
StyI CCWWGG 3 cut(s) 331, 351, 591
TaaI ACNGT 6 cut(s) 260, 273, 324, 1047, 1073, 1314
TaiI ACGT 3 cut(s) 219, 238, 643
TaqI TCGA 3 cut(s) 8, 307, 885
TfiI GAWTC 3 cut(s) 530, 1264, 1270
Tru1I TTAA 7 cut(s) 228, 612, 843, 933, 980, 1238, 1411
Tru9I TTAA 7 cut(s) 228, 612, 843, 933, 980, 1238, 1411
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 1314
TseI GCWGC 5 cut(s) 437, 680, 683, 836, 856
Tsp45I GTSAC 1 cut(s) 1314
TspDTI ATGAA 4 cut(s) 633, 1065, 1145, 1380
TspRI CASTG 1 cut(s) 327
XapI RAATTY 2 cut(s) 620, 1122
XbaI TCTAGA 1 cut(s) 1127
XceI RCATGY 1 cut(s) 1216
XhoI CTCGAG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 890
XspI CTAG 4 cut(s) 677, 821, 1128, 1307
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.