Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005234

Physical Location & Seq

Genomic Coordinates Reverse (-)

9706338 .. 9706849

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGTGCGACTCTGGGAGGAACTGGGAAGGAAACTGGTGATCGTCATCCAAAAATAGGTGACGGTGCACTAATTGGAGCCAGTGTAACTATACTTGGGAATATCAAGATAGGTCGAGGAGCAATGGTAGCTGCTGGTTCCCTTGTGCTGAAAGATGTCCCTCCACACAGCATGGTGGCGGGAATACCAGTAGAGGTGATCGGATATGTAGACGAAATAGATCATTCATTAACAATGAAGCACGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000103 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008374 GO:0008652 GO:0009001 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016407 GO:0016412 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0019344 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01200 ko01230 ko05111 map00270 map00920 map01100 map01110 map01120 map01200 map01230 map05111

Pfam Domains

Protein Families

Hexapep SATase_N

Protein Analysis

84

Amino Acids

8.39

Weight (kDa)

6.38

Isoelectric Point (pI)

8.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep	PF00132	16 - 49	1.1e-09	Bacterial transferase hexapeptide (six repeats)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17640 AT4G35640
fragaria_vesca	FvH4_1g10540 FvH4_1g10540 FvH4_1g10540 FvH4_1g10540
malus_domestica	MD02G1119500.v1.1 MD02G1119600.v1.1 MD15G1233400.v1.1
prunus_persica	Prupe.7G179500_v2.0.a1
pyrus_communis	pycom02g09310 pycom15g20790
rosa_chinensis	RchiOBHm_Chr2g0097471 RchiOBHm_Chr2g0097571 RchiOBHm_Chr2g0097591
rosa_multiflora	Rmu_co8255597.1_g000001 Rmu_co8464327.1_g000001 Rmu_sc0004220.1_g000005 Rmu_sc0005347.1_g000010 Rmu_sc0027623.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256370
rosa_rugosa	Rorug02G0067500 Rorug02G0067600 Rorug02G0067600
rosa_samantha	Rh2AG113900 Rh2BG116700 Rh2CG118700 Rh2DG117700
rosa_wichuraiana	Rw2G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	56
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	50, 71, 208
BaeGI	GKGCMC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	79, 139
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	4 cut(s)	28, 40, 81, 188
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	45
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	4 cut(s)	28, 40, 81, 188
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	40, 198, 220
BspACI	CCGC	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	79, 139
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	4 cut(s)	28, 40, 81, 188
BssMI	GATC	3 cut(s)	40, 198, 220
Bst4CI	ACNGT	2 cut(s)	65, 245
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	3 cut(s)	43, 201, 223
BstMBI	GATC	3 cut(s)	40, 198, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	88
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	2 cut(s)	80, 131
CviKI_1	RGCY	2 cut(s)	80, 131
DpnI	GATC	3 cut(s)	42, 200, 222
DpnII	GATC	3 cut(s)	40, 198, 220
FaeI	CATG	1 cut(s)	175
FaiI	YATR	4 cut(s)	92, 173, 207, 248
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	10
HphI	GGTGA	3 cut(s)	50, 71, 208
Hpy166II	GTNNAC	2 cut(s)	68, 211
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	68, 211
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	65, 245
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	40, 198, 220
LmnI	GCTCC	2 cut(s)	77, 119
LpnPI	CCDG	5 cut(s)	9, 21, 94, 120, 201
Lsp1109I	GCAGC	1 cut(s)	118
MaeIII	GTNAC	2 cut(s)	59, 85
MalI	GATC	3 cut(s)	42, 200, 222
MboI	GATC	3 cut(s)	40, 198, 220
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	4 cut(s)	11, 110, 171, 187
MseI	TTAA	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	40, 198, 220
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	79, 139
NmuCI	GTSAC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PspN4I	GGNNCC	2 cut(s)	79, 139
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	3 cut(s)	40, 198, 220
SchI	GAGTC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	4 cut(s)	61, 115, 133, 198
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	65, 245
TaqI	TCGA	1 cut(s)	115
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	216, 251
TspRI	CASTG	1 cut(s)	88
VneI	GTGCAC	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.