Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Forward (+)

7852529 .. 7853666

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAACCGATCGAGTACAATGTATGTGAGACTTCTAAATGTAACTCCCACGTCGACGACCATGGATGGAAGAAAGTCGTGTCCTCGAAGAGCATTCGGAAGCGAAAACCAGCGGATCAGGCGGCCAGTGGAAACCAACCTACCGGTGAGGACGTTTTCCGTTCATTTGAGGAGAAAAATGCTAATGTGGAGGTGAGGAATGAAAATCTGAAGGCGAAGGAAAGTAAAAAGTCAAAACCCAAAGAAAGAGATGAAGCCTATAGTGTCTATCGATCCTTCAGATCTTGCGGCTTACCTCCTCGAAATGATCGCACAACAATGAGGTGCCAAAGGTTGAGAGGATCCGGAATGGTACTGCGTACAAGACCTAATGCTTTGGCTATTGTATTACCGACACTGAGGGAGAACGTAAGACAAGTGTGTTATGAAATGTTATTGAACTATAAAATGTGGACAGGCCTCCCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

156

Amino Acids

18.02

Weight (kDa)

9.73

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	3 cut(s)	113, 122, 288
AclWI	GGATC	4 cut(s)	123, 267, 336, 349
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	2 cut(s)	230, 262
AfaI	GTAC	3 cut(s)	17, 354, 361
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	4 cut(s)	123, 267, 336, 349
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	2 cut(s)	123, 457
AsiGI	ACCGGT	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	158, 205
BamHI	GGATCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	324
BccI	CCATC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	2 cut(s)	123, 289
BlsI	GCNGC	2 cut(s)	124, 290
BmgBI	CACGTC	1 cut(s)	52
BmiI	GGNNCC	3 cut(s)	6, 326, 343
Bsa29I	ATCGAT	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	61, 464
BsaWI	WCCGGW	2 cut(s)	143, 344
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	61, 464
BseGI	GGATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	185, 288
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	125, 459
BshNI	GGYRCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	144, 345
BsmAI	GTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	125, 459
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
Bsp19I	CCATGG	1 cut(s)	61
BspACI	CCGC	3 cut(s)	113, 122, 288
BspANI	GGCC	2 cut(s)	125, 459
BspCNI	CTCAG	1 cut(s)	390
BspDI	ATCGAT	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	6, 326, 343
BspPI	GGATC	4 cut(s)	123, 267, 336, 349
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	61, 464
BssMI	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
BssT1I	CCWWGG	2 cut(s)	61, 464
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	6 cut(s)	12, 118, 275, 284, 310, 344
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	281, 341
BstYI	RGATCY	2 cut(s)	281, 341
Bsu15I	ATCGAT	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	125, 459
BsuTUI	ATCGAT	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	133, 395
Cfr10I	RCCGGY	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	16, 353, 360
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	125, 257, 291, 380, 459
CviKI_1	RGCY	5 cut(s)	125, 257, 291, 380, 459
CviQI	GTAC	3 cut(s)	16, 353, 360
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	6 cut(s)	11, 117, 274, 283, 309, 343
DpnII	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	61, 464
Eco147I	AGGCCT	1 cut(s)	459
Eco57I	CTGAAG	2 cut(s)	230, 262
EcoT14I	CCWWGG	2 cut(s)	61, 464
ErhI	CCWWGG	2 cut(s)	61, 464
FaeI	CATG	1 cut(s)	65
FaiI	YATR	5 cut(s)	25, 63, 261, 426, 444
FatI	CATG	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	123, 289
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	123, 289
GluI	GCNGC	2 cut(s)	123, 289
HaeIII	GGCC	2 cut(s)	125, 459
HapII	CCGG	2 cut(s)	144, 345
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	144, 345
HphI	GGTGA	2 cut(s)	158, 205
Hpy166II	GTNNAC	2 cut(s)	55, 453
Hpy188I	TCNGA	3 cut(s)	99, 210, 281
Hpy188III	TCNNGA	1 cut(s)	345
Hpy8I	GTNNAC	2 cut(s)	55, 453
Hpy99I	CGWCG	2 cut(s)	56, 59
HpyAV	CCTTC	3 cut(s)	205, 211, 286
HpyCH4IV	ACGT	3 cut(s)	51, 153, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	3 cut(s)	51, 153, 408
Hsp92II	CATG	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
LguI	GCTCTTC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	104, 123, 139, 157, 358, 441
MaeII	ACGT	3 cut(s)	51, 153, 408
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	6 cut(s)	11, 117, 274, 283, 309, 343
MboI	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
MboII	GAAGA	2 cut(s)	82, 100
MflI	RGATCY	2 cut(s)	281, 341
MroI	TCCGGA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	144, 345
Mva1269I	GAATGC	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	6, 326, 343
PceI	AGGCCT	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	93
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	124, 290
Ple19I	CGATCG	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	6, 326, 343
PsuI	RGATCY	2 cut(s)	281, 341
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	3 cut(s)	17, 354, 361
RsaNI	GTAC	3 cut(s)	16, 353, 360
RseI	CAYNNNNRTG	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	123, 289
Sau3AI	GATC	6 cut(s)	9, 115, 272, 281, 307, 341
SfcI	CTRYAG	1 cut(s)	259
SgrDI	CGTCGACG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	317
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	3 cut(s)	113, 122, 288
StuI	AGGCCT	1 cut(s)	459
StyI	CCWWGG	2 cut(s)	61, 464
TaiI	ACGT	3 cut(s)	54, 156, 411
TaqI	TCGA	5 cut(s)	12, 54, 86, 271, 301
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	2 cut(s)	125, 291
TscAI	CASTG	2 cut(s)	133, 402
TspDTI	ATGAA	4 cut(s)	153, 216, 267, 441
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	133, 402
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.