Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Reverse (-)

1374724 .. 1377396

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGCGTTTCGCGGACTATTTCGGCCGCGCATTCTCTGCGGTGTCTGCCTCTCAGTTTCCATGGGTGAAGATGTTCAAGGAGTCATCGGTGGCCAAGCTTGCCGATATCCCCCTTTCTCATATTTCTGAAGCTGTTTATAAGACATCAGTTGACTGGATCAACCAGCGTTCCGTTGAGGCCCTTGGGTCTTTTATATTATGGTCCTTAGACAGCATTCTTGCAGACCTAGCGAGCCAAGTTTCTGGCACGAAGGGCAAGAAGGCTGTGCAGAATGTGTCTTCAAAATCTCAGGTTGCAATATTTGTGGTTGTAGCAATGGTATTGCGAAGAAAACCCGATGTCTTGATTACTATATTGCCAACACTGAGAGAAAATTCAAAGTATCAAGGACAAGATAAGCTTCCAATAACTATATGGATGATAGTTCAGGCTAGTCAAGGGGACCTCGCCGTTGGGTTGCATGCATGGGCACGCAATGTGTTGCCTTTAGTCTGTGGAAAAAGTAGTAATCCACAGTCCCGAGACCTTGTTTTGCAGCTAGTGGAGAGAATTCTGTCTATGCCCAAAGCTCGTACTATTTTAGTAAATAGTGCTGTTAGGAAGGGGGAGCGTTTGGTGCCACCTTCTGCATTGGAGATACTTATGGGAGTTACCTTCCCTGCACATTCAGCTAGAGTAAAGGCCACTGAAAGGTTTGAGGCTATATATCCAACCCTAAAAGCGGTCGCTCTAGCTGGCACCCCTGGAAGCAAGGCAATGAAACAAGTTTCACAGCATATATTGAGTTTTGCTGTCAAAGCTGCAGGAGAAAGTATACCAGAGCTATCCGATGAAGCAGCTGGAATTTTCATTTGGTGTTTGACCCAACATTCTGATTGCTTTAAGCAGTGGGACAAGGTCTACGAGGAAAACTTAGAAGCGAGTGTTGCTGTTCTGAAGAAACTTTCTAATCAATGGAAAGAACATTCTGCAAATCTCTCTCCTTTTGATCCTATGAGGGAGGCTCTTAAAAGTTTTAGGCGCAAGAATGAGAAGGCATTGGCTGGTGAGGCAGAGGATGCACGCCAAGAAAAGCTCAACAAGGAAGCAGACAAGTATTGTAAGACATTATTGGGGAAGATATCACGGGGAAGCGGGTGCAAGAAAACTGTGGCCCTTGCAGTTGTTGCCTTGGCTGTTGGTGCTGCTGTCATGTCCCCAAACGTGGAGTCTTGGGAATCGGAGTTGAAGAAACTAACAGTGACTATCAGCTCTTTCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

422

Amino Acids

46.25

Weight (kDa)

9.45

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccB1I	GGYRCC	2 cut(s)	616, 737
AccI	GTMKAC	2 cut(s)	814, 900
AccII	CGCG	2 cut(s)	11, 27
AciI	CCGC	5 cut(s)	11, 25, 38, 722, 1134
AclWI	GGATC	2 cut(s)	164, 983
AcoI	YGGCCR	2 cut(s)	22, 90
AcsI	RAATTY	3 cut(s)	373, 549, 843
AcuI	CTGAAG	2 cut(s)	147, 956
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	690, 721, 1204
AgsI	TTSAA	5 cut(s)	76, 282, 378, 1228, 1262
AjnI	CCWGG	1 cut(s)	742
AjuI	GAANNNNNNNTTGG	2 cut(s)	835, 867
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	164, 983
Ama87I	CYCGRG	1 cut(s)	519
AoxI	GGCC	5 cut(s)	22, 90, 177, 681, 1152
ApeKI	GCWGC	4 cut(s)	535, 800, 836, 1184
ApoI	RAATTY	3 cut(s)	373, 549, 843
ArsI	GACNNNNNNTTYG	2 cut(s)	1193, 1225
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	29, 1023
AspS9I	GGNCC	4 cut(s)	178, 201, 442, 1153
AsuHPI	GGTGA	2 cut(s)	76, 1058
AvaI	CYCGRG	1 cut(s)	519
AvaII	GGWCC	2 cut(s)	201, 442
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	2 cut(s)	616, 737
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	547, 787, 848, 1171
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	744
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	5 cut(s)	227, 432, 539, 672, 731
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	5 cut(s)	25, 536, 801, 837, 1185
BlsI	GCNGC	5 cut(s)	26, 537, 802, 838, 1186
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	2 cut(s)	201, 442
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	4 cut(s)	178, 201, 442, 1153
BmiI	GGNNCC	3 cut(s)	443, 618, 739
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	1 cut(s)	1048
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	988, 1020
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	4 cut(s)	59, 181, 742, 1170
Bsc4I	CCNNNNNNNGG	3 cut(s)	690, 721, 1204
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	3 cut(s)	321, 481, 762
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	4 cut(s)	59, 181, 742, 1170
BseGI	GGATG	2 cut(s)	423, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	690, 721, 1204
BseMI	GCAATG	3 cut(s)	321, 481, 762
BseMII	CTCAG	3 cut(s)	65, 302, 356
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	472
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	4 cut(s)	547, 787, 848, 1171
BsgI	GTGCAG	2 cut(s)	287, 645
Bsh1236I	CGCG	2 cut(s)	11, 27
Bsh1285I	CGRYCG	2 cut(s)	25, 726
BshFI	GGCC	5 cut(s)	24, 92, 179, 683, 1154
BshNI	GGYRCC	2 cut(s)	616, 737
BsiEI	CGRYCG	2 cut(s)	25, 726
BsiHKCI	CYCGRG	1 cut(s)	519
BslFI	GGGAC	4 cut(s)	455, 502, 905, 1180
BslI	CCNNNNNNNGG	3 cut(s)	690, 721, 1204
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	4 cut(s)	455, 502, 905, 1180
BsmI	GAATGC	2 cut(s)	29, 213
BsnI	GGCC	5 cut(s)	24, 92, 179, 683, 1154
Bso31I	GGTCTC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	156, 988
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	5 cut(s)	11, 25, 38, 722, 1134
BspANI	GGCC	5 cut(s)	24, 92, 179, 683, 1154
BspCNI	CTCAG	3 cut(s)	64, 301, 357
BspFNI	CGCG	2 cut(s)	11, 27
BspLI	GGNNCC	3 cut(s)	443, 618, 739
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	2 cut(s)	164, 983
BspT107I	GGYRCC	2 cut(s)	616, 737
BspTNI	GGTCTC	1 cut(s)	516
BsrDI	GCAATG	3 cut(s)	321, 481, 762
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	59, 181, 742, 1170
BssMI	GATC	2 cut(s)	156, 988
BssNAI	GTATAC	1 cut(s)	815
BssT1I	CCWWGG	3 cut(s)	59, 181, 1170
Bst1107I	GTATAC	1 cut(s)	815
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	516, 1150, 1240
BstAPI	GCANNNNNTGC	3 cut(s)	35, 1058, 1166
BstC8I	GCNNGC	6 cut(s)	99, 232, 462, 472, 736, 1063
BstDEI	CTNAG	5 cut(s)	51, 205, 288, 365, 913
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	423, 1063
BstFNI	CGCG	2 cut(s)	11, 27
BstHHI	GCGC	2 cut(s)	29, 1023
BstKTI	GATC	2 cut(s)	159, 991
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	2 cut(s)	156, 988
BstMCI	CGRYCG	2 cut(s)	25, 726
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	801
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	2 cut(s)	11, 27
BstV1I	GCAGC	4 cut(s)	547, 787, 848, 1171
BstV2I	GAAGAC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	815
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	5 cut(s)	24, 92, 179, 683, 1154
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	423, 1063
BtsI	GCAGTG	1 cut(s)	893
BtsIMutI	CAGTG	4 cut(s)	362, 684, 893, 1245
Cac8I	GCNNGC	6 cut(s)	99, 232, 462, 472, 736, 1063
CfoI	GCGC	2 cut(s)	29, 1023
Cfr13I	GGNCC	4 cut(s)	178, 201, 442, 1153
Csp6I	GTAC	1 cut(s)	573
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	4 cut(s)	60, 461, 465, 1192
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	5 cut(s)	51, 205, 288, 365, 913
DpnI	GATC	2 cut(s)	158, 990
DpnII	GATC	2 cut(s)	156, 988
EaeI	YGGCCR	2 cut(s)	22, 90
EagI	CGGCCG	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	3 cut(s)	59, 181, 1170
Eco31I	GGTCTC	1 cut(s)	516
Eco32I	GATATC	2 cut(s)	106, 1122
Eco47I	GGWCC	2 cut(s)	201, 442
Eco52I	CGGCCG	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	147, 956
Eco88I	CYCGRG	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	178, 442
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	742
EcoRV	GATATC	2 cut(s)	106, 1122
EcoT14I	CCWWGG	3 cut(s)	59, 181, 1170
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	3 cut(s)	59, 181, 1170
FaeI	CATG	4 cut(s)	63, 464, 468, 1195
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	4 cut(s)	455, 502, 905, 1180
FatI	CATG	4 cut(s)	59, 460, 464, 1191
FauI	CCCGC	1 cut(s)	1127
FblI	GTMKAC	2 cut(s)	814, 900
Fnu4HI	GCNGC	5 cut(s)	25, 536, 801, 837, 1185
FokI	GGATG	2 cut(s)	430, 1070
Fsp4HI	GCNGC	5 cut(s)	25, 536, 801, 837, 1185
FspBI	CTAG	5 cut(s)	227, 432, 539, 672, 731
GlaI	GCGC	2 cut(s)	28, 1022
GluI	GCNGC	5 cut(s)	25, 536, 801, 837, 1185
HaeIII	GGCC	5 cut(s)	24, 92, 179, 683, 1154
HhaI	GCGC	2 cut(s)	29, 1023
Hin1II	CATG	4 cut(s)	63, 464, 468, 1195
Hin6I	GCGC	2 cut(s)	27, 1021
HinP1I	GCGC	2 cut(s)	27, 1021
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	2 cut(s)	95, 398
HinfI	GANTC	3 cut(s)	80, 1208, 1217
HphI	GGTGA	2 cut(s)	76, 1058
Hpy166II	GTNNAC	3 cut(s)	151, 815, 901
Hpy188I	TCNGA	5 cut(s)	127, 829, 874, 936, 1222
Hpy188III	TCNNGA	2 cut(s)	343, 519
Hpy8I	GTNNAC	3 cut(s)	151, 815, 901
HpyAV	CCTTC	6 cut(s)	244, 253, 595, 633, 664, 1027
HpyCH4III	ACNGT	3 cut(s)	516, 1150, 1240
HpyCH4IV	ACGT	1 cut(s)	1203
HpyF3I	CTNAG	5 cut(s)	51, 205, 288, 365, 913
HpySE526I	ACGT	1 cut(s)	1203
Hsp92II	CATG	4 cut(s)	63, 464, 468, 1195
HspAI	GCGC	2 cut(s)	27, 1021
Kzo9I	GATC	2 cut(s)	156, 988
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	4 cut(s)	547, 787, 848, 1171
LweI	GCATC	1 cut(s)	1048
MaeI	CTAG	5 cut(s)	227, 432, 539, 672, 731
MaeII	ACGT	1 cut(s)	1203
MaeIII	GTNAC	2 cut(s)	649, 1240
MalI	GATC	2 cut(s)	158, 990
MboI	GATC	2 cut(s)	156, 988
MboII	GAAGA	6 cut(s)	79, 270, 339, 949, 1129, 1240
MhlI	GDGCHC	1 cut(s)	472
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	3 cut(s)	373, 549, 843
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	2 cut(s)	89, 1217
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	9 cut(s)	58, 169, 455, 691, 898, 990, 994, 1042, 1048
Mox20I	TGGCCA	1 cut(s)	92
Mph1103I	ATGCAT	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	2 cut(s)	882, 1008
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	839
MspR9I	CCNGG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	29, 213
MvaI	CCWGG	1 cut(s)	744
MvnI	CGCG	2 cut(s)	11, 27
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	156, 988
NlaIII	CATG	4 cut(s)	63, 464, 468, 1195
NlaIV	GGNNCC	3 cut(s)	443, 618, 739
NmuCI	GTSAC	1 cut(s)	1240
NsiI	ATGCAT	1 cut(s)	466
NspI	RCATGY	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	464
PctI	GAATGC	2 cut(s)	29, 213
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	1217
PflFI	GACNNNGTC	1 cut(s)	896
PkrI	GCNGC	5 cut(s)	26, 537, 802, 838, 1186
PleI	GAGTC	2 cut(s)	88, 1216
PpsI	GAGTC	2 cut(s)	88, 1216
PpuMI	RGGWCCY	1 cut(s)	442
PsiI	TTATAA	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	3 cut(s)	443, 618, 739
PspPI	GGNCC	4 cut(s)	178, 201, 442, 1153
PspPPI	RGGWCCY	1 cut(s)	442
PstI	CTGCAG	1 cut(s)	805
PsyI	GACNNNGTC	1 cut(s)	896
PvuII	CAGCTG	1 cut(s)	839
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	882, 1008
SatI	GCNGC	5 cut(s)	25, 536, 801, 837, 1185
Sau3AI	GATC	2 cut(s)	156, 988
Sau96I	GGNCC	4 cut(s)	178, 201, 442, 1153
SchI	GAGTC	2 cut(s)	89, 1217
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	1 cut(s)	1048
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	2 cut(s)	201, 442
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	3 cut(s)	373, 549, 843
SsiI	CCGC	5 cut(s)	11, 25, 38, 722, 1134
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	5 cut(s)	227, 432, 539, 672, 731
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	3 cut(s)	59, 181, 1170
TaaI	ACNGT	3 cut(s)	516, 1150, 1240
TaiI	ACGT	1 cut(s)	1206
TasI	AATT	3 cut(s)	373, 549, 843
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	1217
Tru1I	TTAA	2 cut(s)	882, 1008
Tru9I	TTAA	2 cut(s)	882, 1008
TscAI	CASTG	4 cut(s)	369, 691, 893, 1245
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	4 cut(s)	535, 800, 836, 1184
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	3 cut(s)	773, 838, 846
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	4 cut(s)	369, 691, 893, 1245
Tth111I	GACNNNGTC	1 cut(s)	896
VpaK11BI	GGWCC	2 cut(s)	201, 442
XapI	RAATTY	3 cut(s)	373, 549, 843
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
XmiI	GTMKAC	2 cut(s)	814, 900
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	5 cut(s)	227, 432, 539, 672, 731
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.