Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8042210.1

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 554

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8042210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 364 bp

ggcggcggcggccaatgccgacgccatcggcgttgttccggcgagatcgaaacaccggtcggacgacgagtacggcgaggacagcgatgacgaggccgtgccgcagaacgccaaggaggcaggggaggagaagaagttgaagccgaagaaaccgaagaagcctaaggtcaccgtggccgaggcggcggcgaagatcgacgtgaacgctctcacggcggcgctgatccagcttccgcaattcgaggaacatatacaggtgatgaagctggcggactttttcggccgggcattctctgcagtgacttccgcccagtttccatgggtcaagatgttcaaggagtcgactgtggcgaagattgccgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

121

Amino Acids

13.08

Weight (kDa)

6.18

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	3 cut(s)	10, 175, 281
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	72
AgeI	ACCGGT	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	140, 335
AjiI	CACGTC	1 cut(s)	200
AluBI	AGCT	2 cut(s)	230, 266
AluI	AGCT	2 cut(s)	230, 266
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	4 cut(s)	10, 94, 175, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AsiGI	ACCGGT	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	161, 269
AxyI	CCTNAGG	1 cut(s)	163
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	3 cut(s)	81, 89, 229
BcnI	CCSGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	222
BglI	GCCNNNNNGGC	2 cut(s)	117, 183
BisI	GCNGC	7 cut(s)	4, 7, 10, 102, 184, 187, 217
BlsI	GCNGC	7 cut(s)	5, 8, 11, 103, 185, 188, 218
Bme1390I	CCNGG	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	22
BsaJI	CCNNGG	4 cut(s)	112, 172, 178, 318
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	311
Bse21I	CCTNAGG	1 cut(s)	163
BseDI	CCNNGG	4 cut(s)	112, 172, 178, 318
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	141
BseX3I	CGGCCG	1 cut(s)	281
Bsh1285I	CGRYCG	2 cut(s)	60, 284
BshFI	GGCC	4 cut(s)	12, 96, 177, 283
BshTI	ACCGGT	1 cut(s)	55
BsiEI	CGRYCG	2 cut(s)	60, 284
BsiSI	CCGG	3 cut(s)	39, 56, 284
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	12, 96, 177, 283
Bsp143I	GATC	3 cut(s)	45, 193, 223
Bsp19I	CCATGG	1 cut(s)	318
BspANI	GGCC	4 cut(s)	12, 96, 177, 283
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	4 cut(s)	112, 172, 178, 318
BssMI	GATC	3 cut(s)	45, 193, 223
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	2 cut(s)	112, 318
Bst4CI	ACNGT	2 cut(s)	173, 347
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	163
BstDSI	CCRYGG	2 cut(s)	172, 318
BstEII	GGTNACC	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	48, 196, 226
BstMBI	GATC	3 cut(s)	45, 193, 223
BstMCI	CGRYCG	2 cut(s)	60, 284
BstMWI	GCNNNNNNNGC	9 cut(s)	9, 15, 82, 117, 183, 213, 227, 294, 357
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	295
BstZI	CGGCCG	1 cut(s)	281
Bsu36I	CCTNAGG	1 cut(s)	163
BsuRI	GGCC	4 cut(s)	12, 96, 177, 283
BtgI	CCRYGG	2 cut(s)	172, 318
BtgZI	GCGATG	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	55
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	71
CspAI	ACCGGT	1 cut(s)	55
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	8 cut(s)	12, 96, 143, 161, 177, 230, 266, 283
CviKI_1	RGCY	8 cut(s)	12, 96, 143, 161, 177, 230, 266, 283
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	3 cut(s)	47, 195, 225
DpnII	GATC	3 cut(s)	45, 193, 223
EaeI	YGGCCR	3 cut(s)	10, 175, 281
EagI	CGGCCG	1 cut(s)	281
EciI	GGCGGA	2 cut(s)	285, 296
EclXI	CGGCCG	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	112, 318
Eco52I	CGGCCG	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	112, 318
ErhI	CCWWGG	2 cut(s)	112, 318
FaeI	CATG	1 cut(s)	322
FaiI	YATR	3 cut(s)	250, 252, 320
FatI	CATG	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	7 cut(s)	4, 7, 10, 102, 184, 187, 217
Fsp4HI	GCNGC	7 cut(s)	4, 7, 10, 102, 184, 187, 217
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	7 cut(s)	4, 7, 10, 102, 184, 187, 217
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	4 cut(s)	12, 96, 177, 283
HapII	CCGG	3 cut(s)	39, 56, 284
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	3 cut(s)	39, 56, 284
HphI	GGTGA	2 cut(s)	161, 269
Hpy166II	GTNNAC	2 cut(s)	203, 343
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	203, 343
Hpy99I	CGWCG	3 cut(s)	24, 69, 201
HpyCH4III	ACNGT	2 cut(s)	173, 347
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	9 cut(s)	9, 15, 82, 117, 183, 213, 227, 294, 357
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	45, 193, 223
LpnPI	CCDG	8 cut(s)	52, 69, 106, 240, 240, 252, 297, 324
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	2 cut(s)	167, 299
MalI	GATC	3 cut(s)	47, 195, 225
MboI	GATC	3 cut(s)	45, 193, 223
MboII	GAAGA	4 cut(s)	143, 158, 167, 203
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	71, 86, 110, 119, 173, 236
MspI	CCGG	3 cut(s)	39, 56, 284
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	288
MwoI	GCNNNNNNNGC	9 cut(s)	9, 15, 82, 117, 183, 213, 227, 294, 357
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	3 cut(s)	45, 193, 223
NlaIII	CATG	1 cut(s)	322
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	167, 299
PcsI	WCGNNNNNNNCGW	3 cut(s)	28, 73, 348
PctI	GAATGC	1 cut(s)	288
PinAI	ACCGGT	1 cut(s)	55
PkrI	GCNGC	7 cut(s)	5, 8, 11, 103, 185, 188, 218
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SalI	GTCGAC	1 cut(s)	341
SatI	GCNGC	7 cut(s)	4, 7, 10, 102, 184, 187, 217
Sau3AI	GATC	3 cut(s)	45, 193, 223
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	5 cut(s)	169, 202, 232, 259, 268
SfcI	CTRYAG	1 cut(s)	295
Sse9I	AATT	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	112, 318
TaaI	ACNGT	2 cut(s)	173, 347
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	4 cut(s)	48, 196, 241, 342
TasI	AATT	1 cut(s)	237
TauI	GCSGC	7 cut(s)	6, 9, 12, 104, 186, 189, 219
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	167, 299
Tsp45I	GTSAC	2 cut(s)	167, 299
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.