Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006117.1

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1400

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ctgcctatattgagtagcaagtcaggttgtaatccacagtctagagacttgattttgcagtcagtagaaagaattttatcatctccaaaagcttggcctattctattaaatggtgctgttaggaaaggggagcacatagtgccaccatcagcccttgatctcttgatgagagtttcttttccttcaccttcagcgcgagttaaggcaactgagagatttgaagctgtctatccaaccttgaaagagattgcccttgctgggtccccaggaagcaaaacagtgaggcaggttgcacagaagacactgaattattcagttaaagctgttaaagaaggcatccccgatctctctaaggaggcaaccgctatatttatctggtgtttgacacaaagtcccgaatgttacaagcaatgggacatgctttatctggacaatcttgatgcaagtgttattgtgctgaaaaagttatctgacgagtggaaggatcactccgttaaacatgcctctcttgaccccttgagggaaaccttgaagagtttcagggagaagaatgaaaaagcattgccaaacggagatgatttggtgcgccattcgttgttgaaggatgcagataaatattgcaagctgattttaggacggtcatctcaaggccgtggatgcatgaaaagcatggttctggtgtctgttgccctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

231

Amino Acids

25.63

Weight (kDa)

9.32

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccII	CGCG	1 cut(s)	196
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	258, 520
AgsI	TTSAA	4 cut(s)	221, 241, 532, 601
AhdI	GACNNNNNGTC	1 cut(s)	390
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	4 cut(s)	92, 224, 323, 625
AluI	AGCT	4 cut(s)	92, 224, 323, 625
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	2 cut(s)	95, 649
ApoI	RAATTY	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	536
AspLEI	GCGC	2 cut(s)	196, 588
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	177
AvaII	GGWCC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	261
BmeRI	GACNNNNNGTC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	262, 263
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	4 cut(s)	345, 430, 595, 647
BpiI	GAAGAC	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	538, 630
BsaJI	CCNNGG	2 cut(s)	265, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 520
Bse3DI	GCAATG	2 cut(s)	416, 560
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	265, 652
BseGI	GGATG	3 cut(s)	336, 610, 662
BseLI	CCNNNNNNNGG	2 cut(s)	258, 520
BseMI	GCAATG	2 cut(s)	416, 560
BseMII	CTCAG	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	97, 651
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	3 cut(s)	247, 378, 428
BslI	CCNNNNNNNGG	2 cut(s)	258, 520
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	3 cut(s)	247, 378, 428
BsnI	GGCC	2 cut(s)	97, 651
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	157, 343, 484
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	2 cut(s)	97, 651
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	262, 263
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	416, 560
BssECI	CCNNGG	2 cut(s)	265, 652
BssMI	GATC	3 cut(s)	157, 343, 484
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	39, 280, 639
Bst6I	CTCTTC	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	2 cut(s)	210, 351
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	3 cut(s)	336, 610, 662
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	2 cut(s)	196, 588
BstKTI	GATC	3 cut(s)	160, 346, 487
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	3 cut(s)	157, 343, 484
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 657, 666
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	2 cut(s)	421, 503
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	97, 651
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	336, 610, 662
BtsIMutI	CAGTG	2 cut(s)	285, 302
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	623
CfoI	GCGC	2 cut(s)	196, 588
Cfr13I	GGNCC	1 cut(s)	261
CviAII	CATG	4 cut(s)	418, 500, 661, 670
CviJI	RGCY	7 cut(s)	92, 97, 152, 224, 323, 625, 651
CviKI_1	RGCY	7 cut(s)	92, 97, 152, 224, 323, 625, 651
DdeI	CTNAG	2 cut(s)	210, 351
DpnI	GATC	3 cut(s)	159, 345, 486
DpnII	GATC	3 cut(s)	157, 343, 484
DraIII	CACNNNGTG	1 cut(s)	139
DriI	GACNNNNNGTC	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	527
Eam1105I	GACNNNNNGTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	265
EcoT22I	ATGCAT	1 cut(s)	662
FaeI	CATG	4 cut(s)	421, 503, 664, 673
FaiI	YATR	7 cut(s)	8, 137, 368, 419, 501, 662, 671
FaqI	GGGAC	3 cut(s)	247, 378, 428
FatI	CATG	4 cut(s)	417, 499, 660, 669
FokI	GGATG	3 cut(s)	323, 617, 669
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	195, 587
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	97, 651
HhaI	GCGC	2 cut(s)	196, 588
Hin1II	CATG	4 cut(s)	421, 503, 664, 673
Hin6I	GCGC	2 cut(s)	194, 586
HinP1I	GCGC	2 cut(s)	194, 586
HindIII	AAGCTT	1 cut(s)	90
HphI	GGTGA	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	6 cut(s)	42, 163, 395, 428, 437, 509
HpyAV	CCTTC	5 cut(s)	192, 198, 326, 475, 595
HpyCH4III	ACNGT	3 cut(s)	39, 280, 639
HpyCH4V	TGCA	6 cut(s)	58, 293, 443, 608, 621, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 657, 666
HpyF3I	CTNAG	2 cut(s)	210, 351
Hsp92II	CATG	4 cut(s)	421, 503, 664, 673
HspAI	GCGC	2 cut(s)	194, 586
KflI	GGGWCCC	1 cut(s)	261
Kzo9I	GATC	3 cut(s)	157, 343, 484
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	9, 243, 252, 272, 279, 361, 413, 526, 662
LweI	GCATC	4 cut(s)	345, 430, 595, 647
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	3 cut(s)	159, 345, 486
MboI	GATC	3 cut(s)	157, 343, 484
MboII	GAAGA	3 cut(s)	310, 544, 559
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	72, 307
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	276, 349, 513, 514
Mph1103I	ATGCAT	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	5 cut(s)	107, 201, 318, 327, 495
MspR9I	CCNGG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	139, 657, 666
NdeII	GATC	3 cut(s)	157, 343, 484
NlaIII	CATG	4 cut(s)	421, 503, 664, 673
NlaIV	GGNNCC	2 cut(s)	262, 263
NsiI	ATGCAT	1 cut(s)	662
NspI	RCATGY	2 cut(s)	421, 503
PdmI	GAANNNNTTC	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	262, 263
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	107, 201, 318, 327, 495
Sau3AI	GATC	3 cut(s)	157, 343, 484
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	9 cut(s)	28, 94, 190, 226, 239, 291, 325, 530, 627
SfaNI	GCATC	4 cut(s)	345, 430, 595, 647
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	517, 645
SmoI	CTYRAG	2 cut(s)	517, 645
Sse9I	AATT	2 cut(s)	72, 307
SsiI	CCGC	1 cut(s)	363
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	39, 280, 639
TasI	AATT	2 cut(s)	72, 307
Tru1I	TTAA	5 cut(s)	107, 201, 318, 327, 495
Tru9I	TTAA	5 cut(s)	107, 201, 318, 327, 495
TscAI	CASTG	2 cut(s)	285, 309
TspDTI	ATGAA	2 cut(s)	567, 677
TspGWI	ACGGA	2 cut(s)	481, 585
TspRI	CASTG	2 cut(s)	285, 309
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	72
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	2 cut(s)	421, 503
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.