Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034766.1

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Reverse (-)

70 .. 1813

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggtgttgcgaaaaaaacctgatgtattgtttagtctatttcctgtgatgagggaaagttcgaaatatcaaggccaagataagcttccgctcacggtgtggttgattacgcaggcctctcaaggagatctggttgttgggttgtacacatgggtacatcttctcctgcctatattgagtagcaagtcaggttgtaatccacagtctagagacttgattttgcagtcagtagaaagaattttatcatctccaaaagctcggcctattctattaaatggtgctgttaggaaaggggagcacatagtgccaccatcagcccttgatctcttgatgagagtttcttttccttcaccttcagcgcgagttaaggcaactgagagatttgaagctgtctatccaaccttgaaagagattgcccttgctgggtccccaggaagcaaaacagtgaggcaggttgcacagaagacactgaattattcagttaaagctgttaaagaaggcatccccgatctctctaaggaggcaaccgctatatttatctggtgtttgacacaaagtcccgaatgttacaagcaatgggacatgctttatctggacaatcttgatgcaagtgttattgtgctgaaaaagttatctgacgagtggaaggatcactccgttaaacatgcctctcttgaccccttgagggaaaccttgaagagtttcagggagaagaatgaaaaagcattgccaaacggagatgatttggtgcgccattcgttgttgaaggatgcagataaatattgcaagctgattttaggacggtcatctcaaggccgtggatgcatgaaaagcatggttctggtgtctgttgcccttgttatgggtgctgctatcatgtcccaaaacatacaacccaaagacctcaagaaacttgcagccatgtttaacttccctctgactctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

315

Amino Acids

35.1

Weight (kDa)

9.53

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	91
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	89, 528
AclWI	GGATC	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	339
AdeI	CACNNNGTG	2 cut(s)	99, 304
AfaI	GTAC	2 cut(s)	146, 156
AfiI	CCNNNNNNNGG	3 cut(s)	423, 685, 862
AgsI	TTSAA	4 cut(s)	386, 406, 697, 766
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	5 cut(s)	85, 257, 389, 488, 790
AluI	AGCT	5 cut(s)	85, 257, 389, 488, 790
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	657
AoxI	GGCC	4 cut(s)	73, 114, 260, 814
ApeKI	GCWGC	2 cut(s)	869, 917
ApoI	RAATTY	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	361, 753
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	342
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	856, 929
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	801
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	870, 918
BlsI	GCNGC	2 cut(s)	871, 919
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	426
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	427, 428
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	4 cut(s)	510, 595, 760, 812
BpiI	GAAGAC	1 cut(s)	470
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	4 cut(s)	105, 703, 795, 890
BsaJI	CCNNGG	2 cut(s)	430, 817
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 147, 177
Bsc4I	CCNNNNNNNGG	3 cut(s)	423, 685, 862
Bse3DI	GCAATG	2 cut(s)	581, 725
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	430, 817
BseGI	GGATG	3 cut(s)	501, 775, 827
BseLI	CCNNNNNNNGG	3 cut(s)	423, 685, 862
BseMI	GCAATG	2 cut(s)	581, 725
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	856, 929
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	4 cut(s)	75, 116, 262, 816
BsiHKAI	GWGCWC	1 cut(s)	300
BslFI	GGGAC	4 cut(s)	412, 543, 593, 865
BslI	CCNNNNNNNGG	3 cut(s)	423, 685, 862
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	4 cut(s)	412, 543, 593, 865
BsnI	GGCC	4 cut(s)	75, 116, 262, 816
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	127, 322, 508, 649
BspACI	CCGC	2 cut(s)	89, 528
BspANI	GGCC	4 cut(s)	75, 116, 262, 816
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	427, 428
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	581, 725
BsrGI	TGTACA	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	430, 817
BssMI	GATC	4 cut(s)	127, 322, 508, 649
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	4 cut(s)	97, 204, 445, 804
Bst6I	CTCTTC	1 cut(s)	692
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstAUI	TGTACA	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	114, 788
BstDEI	CTNAG	2 cut(s)	375, 516
BstDSI	CCRYGG	1 cut(s)	817
BstF5I	GGATG	3 cut(s)	501, 775, 827
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	361, 753
BstKTI	GATC	4 cut(s)	130, 325, 511, 652
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	127, 322, 508, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 822, 831
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	586, 668
BstSCI	CCNGG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	856, 929
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	75, 116, 262, 816
BtgI	CCRYGG	1 cut(s)	817
BtsCI	GGATG	3 cut(s)	501, 775, 827
BtsIMutI	CAGTG	2 cut(s)	450, 467
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	114, 788
CfoI	GCGC	2 cut(s)	361, 753
Cfr13I	GGNCC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	145, 155
CviAII	CATG	7 cut(s)	150, 583, 665, 826, 835, 877, 922
CviQI	GTAC	2 cut(s)	145, 155
DdeI	CTNAG	2 cut(s)	375, 516
DpnI	GATC	4 cut(s)	129, 324, 510, 651
DpnII	GATC	4 cut(s)	127, 322, 508, 649
DraIII	CACNNNGTG	2 cut(s)	99, 304
DriI	GACNNNNNGTC	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	692
Eam1105I	GACNNNNNGTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	692
Eco147I	AGGCCT	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	827
FaeI	CATG	7 cut(s)	153, 586, 668, 829, 838, 880, 925
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	4 cut(s)	412, 543, 593, 865
FatI	CATG	7 cut(s)	149, 582, 664, 825, 834, 876, 921
Fnu4HI	GCNGC	2 cut(s)	870, 918
FokI	GGATG	3 cut(s)	488, 782, 834
Fsp4HI	GCNGC	2 cut(s)	870, 918
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	2 cut(s)	360, 752
GluI	GCNGC	2 cut(s)	870, 918
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	4 cut(s)	75, 116, 262, 816
HhaI	GCGC	2 cut(s)	361, 753
Hin1II	CATG	7 cut(s)	153, 586, 668, 829, 838, 880, 925
Hin6I	GCGC	2 cut(s)	359, 751
HinP1I	GCGC	2 cut(s)	359, 751
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	1 cut(s)	940
HphI	GGTGA	1 cut(s)	342
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	637, 939
Hpy188III	TCNNGA	7 cut(s)	207, 328, 560, 593, 602, 674, 907
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	5 cut(s)	357, 363, 491, 640, 760
HpyCH4III	ACNGT	4 cut(s)	97, 204, 445, 804
HpyCH4V	TGCA	7 cut(s)	223, 458, 608, 773, 786, 825, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 822, 831
HpyF3I	CTNAG	2 cut(s)	375, 516
Hsp92II	CATG	7 cut(s)	153, 586, 668, 829, 838, 880, 925
HspAI	GCGC	2 cut(s)	359, 751
KflI	GGGWCCC	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	127, 322, 508, 649
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	856, 929
LweI	GCATC	4 cut(s)	510, 595, 760, 812
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	4 cut(s)	129, 324, 510, 651
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	4 cut(s)	127, 322, 508, 649
MboII	GAAGA	4 cut(s)	152, 475, 709, 724
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	237, 472
MlyI	GAGTC	1 cut(s)	934
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	8 cut(s)	45, 127, 441, 514, 678, 679, 914, 945
Mph1103I	ATGCAT	1 cut(s)	827
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	6 cut(s)	272, 366, 483, 492, 660, 927
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	304, 822, 831
NdeII	GATC	4 cut(s)	127, 322, 508, 649
NlaIII	CATG	7 cut(s)	153, 586, 668, 829, 838, 880, 925
NlaIV	GGNNCC	2 cut(s)	427, 428
NmeAIII	GCCGAG	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	827
NspI	RCATGY	2 cut(s)	586, 668
NspV	TTCGAA	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	871, 919
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PpuMI	RGGWCCY	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	427, 428
PspPI	GGNCC	1 cut(s)	426
PspPPI	RGGWCCY	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	146, 156
RsaNI	GTAC	2 cut(s)	145, 155
SaqAI	TTAA	6 cut(s)	272, 366, 483, 492, 660, 927
SatI	GCNGC	2 cut(s)	870, 918
Sau3AI	GATC	4 cut(s)	127, 322, 508, 649
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	1 cut(s)	934
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	4 cut(s)	510, 595, 760, 812
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	426
SmlI	CTYRAG	4 cut(s)	120, 682, 810, 905
SmoI	CTYRAG	4 cut(s)	120, 682, 810, 905
Sse9I	AATT	2 cut(s)	237, 472
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	2 cut(s)	89, 528
SspI	AATATT	1 cut(s)	782
SspMI	CTAG	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	97, 204, 445, 804
TaqI	TCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	237, 472
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	6 cut(s)	272, 366, 483, 492, 660, 927
Tru9I	TTAA	6 cut(s)	272, 366, 483, 492, 660, 927
TscAI	CASTG	2 cut(s)	450, 474
TseI	GCWGC	2 cut(s)	869, 917
TspDTI	ATGAA	2 cut(s)	732, 842
TspGWI	ACGGA	2 cut(s)	646, 750
TspRI	CASTG	2 cut(s)	450, 474
VpaK11BI	GGWCC	1 cut(s)	426
XapI	RAATTY	1 cut(s)	237
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	2 cut(s)	586, 668
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.