Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Reverse (-)

18278163 .. 18281588

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17790.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCGCTTGGCGGATTATTTCGGTCGAGCATTTGCGGCGGTCAGTCCGGCTCAATTTCCGTGGTTGAAGACGTTCAAGGAATCCTCTGTGGCAAAGCTGGTTGATATCCCCCTTTCGCATGTATCTGATGATGTTTACAAGATATCAGTTGAATGGATCGGCCAGCGCTCTACTGAAGCGCTTGGATCGTTTGTGCTATGGTCGTTGGACAGCATTCTTGCTGACCTTGCAACTCATCAAGGAGTAGCCAAGGGATCCAAAAAGGCGGTTCAGCAAGCACCTTCAAAGTCTCAGGTTGCCATATTTGTGGTTTTAGCAATGGTATTGCGACGAAGACCTGAAGTACTGATTAGTTTAGTTCCTGTGATGAGGGGAAGTCCGAAATATGAAGGCCAAGATAAGCTTCCAATCACAGTTTGGTTGGTTGCACAGGCTTCTCAAGGAGATCTGGTTGTTGGGTTGTACTCATGGGTACAATTTCTCTTGCCTATATTGAGTAGCAAGTCAAGTAGTAATCCACTGTGTAGAGACTTAATTTTGCAGTCTGTGGAAAGAATTTTGTCTTCTCCGAAAGCCCGTCCTATTCTATTAAATGGTGCTGTCAGAAAGGGGGAGCACATAGTGCCACCATCAGCCCTTGATCTCTTGATGAGAGTCTCTTTTCCGACACCTTCTGCCCGAGTTAAGGCAACTGAGAGGTTTGAAGCTGTTTATCCAACTTTGAAAGAGATCGCCCTTGCTGGTTCCCCCAGAAGCAAGACAATGAAGCAAGTCACACAGCAGATATTAAAGAATTCAGTTAAAGCTGTTAATGAGGGCATACCTGATCTGTCTAAGGAAGCAAGCGGCTTATTTATTTGGTGTTTGACGCAAAACCCTGAATGTTACAGGCAATGGGACATACTTTATCTGGACAATCTCGATGCAAGTGTTGTTCTCCTGAAAAAGCTATCTGACGAGTGGAAGGAGCAATCTGTTAAACATGCTTCTCTTGACCCCTTGAGGGAAACTTTAAAGAGTTTCAGGGAGAAGAATGATAAAGCATTGGCAGCGGGGGGAGCTGATGCTGCCCGCCATTCACTGTTGAAGGATGCAGACAAATACTGCAAACAGATTTTGGGACGATTGTCGCAAGGCCATGTATGCATGAAGAGCATGGTACTTGTTTCTGTTGCCCTCGCTGTGGGTGCTGCGGTCATGTCCCAAAACATACAACCTGGGGACCTTAAGAAATTTGTAGCTATGTTTAACTTACCCCCAACTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

423

Amino Acids

46.43

Weight (kDa)

9.51

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	11, 35, 38, 266, 846, 1052, 1072, 1193
AclWI	GGATC	4 cut(s)	164, 193, 249, 262
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	555, 793, 1232
AcuI	CTGAAG	2 cut(s)	195, 360
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	4 cut(s)	345, 464, 474, 1161
AfeI	AGCGCT	2 cut(s)	167, 180
AfiI	CCNNNNNNNGG	3 cut(s)	685, 1003, 1183
AflII	CTTAAG	1 cut(s)	1226
AgsI	TTSAA	7 cut(s)	67, 76, 152, 285, 704, 724, 1087
AjnI	CCWGG	1 cut(s)	1216
AjuI	GAANNNNNNNTTGG	2 cut(s)	387, 419
AluBI	AGCT	7 cut(s)	97, 403, 707, 806, 949, 1061, 1241
AluI	AGCT	7 cut(s)	97, 403, 707, 806, 949, 1061, 1241
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	3 cut(s)	294, 522, 661
AlwI	GGATC	4 cut(s)	164, 193, 249, 262
Ama87I	CYCGRG	1 cut(s)	678
Aor51HI	AGCGCT	2 cut(s)	167, 180
AoxI	GGCC	3 cut(s)	160, 391, 1135
ApeKI	GCWGC	3 cut(s)	1049, 1067, 1190
ApoI	RAATTY	3 cut(s)	555, 793, 1232
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	3 cut(s)	6, 168, 181
AspS9I	GGNCC	1 cut(s)	1222
AvaI	CYCGRG	1 cut(s)	678
AvaII	GGWCC	1 cut(s)	1222
BamHI	GGATCC	1 cut(s)	254
BbsI	GAAGAC	3 cut(s)	74, 340, 555
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	3 cut(s)	1054, 1061, 1177
BccI	CCATC	1 cut(s)	637
BciT130I	CCWGG	1 cut(s)	1218
BcoDI	GTCTC	3 cut(s)	294, 522, 661
BfoI	RGCGCY	2 cut(s)	169, 182
BfrI	CTTAAG	1 cut(s)	1226
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	5 cut(s)	36, 847, 1050, 1068, 1191
BlsI	GCNGC	5 cut(s)	37, 848, 1051, 1069, 1192
BmcAI	AGTACT	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	1218
Bme18I	GGWCC	1 cut(s)	1222
BmeT110I	CYCGRG	1 cut(s)	678
BmgT120I	GGNCC	1 cut(s)	1222
BmiI	GGNNCC	3 cut(s)	256, 745, 1223
BmrFI	CCNGG	1 cut(s)	1218
BmsI	GCATC	3 cut(s)	913, 1054, 1081
BoxI	GACNNNNGTC	1 cut(s)	1126
BpiI	GAAGAC	3 cut(s)	74, 340, 555
BpuEI	CTTGAG	2 cut(s)	423, 1021
BsaJI	CCNNGG	3 cut(s)	59, 249, 1217
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	685, 1003, 1183
Bse3DI	GCAATG	2 cut(s)	324, 899
BseBI	CCWGG	1 cut(s)	1218
BseDI	CCNNGG	3 cut(s)	59, 249, 1217
BseGI	GGATG	1 cut(s)	1096
BseLI	CCNNNNNNNGG	3 cut(s)	685, 1003, 1183
BseMI	GCAATG	2 cut(s)	324, 899
BseMII	CTCAG	2 cut(s)	305, 684
BseXI	GCAGC	3 cut(s)	1054, 1061, 1177
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	162, 393, 1137
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	678
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	4 cut(s)	911, 1134, 1186, 1235
BslI	CCNNNNNNNGG	3 cut(s)	685, 1003, 1183
BsmAI	GTCTC	3 cut(s)	294, 522, 661
BsmFI	GGGAC	4 cut(s)	911, 1134, 1186, 1235
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	3 cut(s)	162, 393, 1137
BsoBI	CYCGRG	1 cut(s)	678
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
BspACI	CCGC	8 cut(s)	11, 35, 38, 266, 846, 1052, 1072, 1193
BspANI	GGCC	3 cut(s)	162, 393, 1137
BspCNI	CTCAG	2 cut(s)	304, 685
BspLI	GGNNCC	3 cut(s)	256, 745, 1223
BspPI	GGATC	4 cut(s)	164, 193, 249, 262
BspQI	GCTCTTC	1 cut(s)	1145
BspTI	CTTAAG	1 cut(s)	1226
BsrDI	GCAATG	2 cut(s)	324, 899
BssECI	CCNNGG	3 cut(s)	59, 249, 1217
BssMI	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	1218
Bst4CI	ACNGT	3 cut(s)	415, 522, 1083
Bst6I	CTCTTC	1 cut(s)	1145
BstAFI	CTTAAG	1 cut(s)	1226
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstC8I	GCNNGC	4 cut(s)	164, 276, 844, 1072
BstDEI	CTNAG	3 cut(s)	291, 693, 834
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	1096
BstH2I	RGCGCY	2 cut(s)	169, 182
BstHHI	GCGC	3 cut(s)	6, 168, 181
BstKTI	GATC	7 cut(s)	159, 188, 257, 448, 643, 732, 829
BstMAI	GTCTC	3 cut(s)	294, 522, 661
BstMBI	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 227, 622, 1049, 1058, 1067, 1143, 1152, 1187
BstNI	CCWGG	1 cut(s)	1218
BstNSI	RCATGY	2 cut(s)	122, 986
BstPAI	GACNNNNGTC	1 cut(s)	1126
BstSCI	CCNGG	1 cut(s)	1216
BstV1I	GCAGC	3 cut(s)	1054, 1061, 1177
BstV2I	GAAGAC	3 cut(s)	74, 340, 555
BstX2I	RGATCY	2 cut(s)	254, 445
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	2 cut(s)	254, 445
BsuRI	GGCC	3 cut(s)	162, 393, 1137
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	1096
BtsIMutI	CAGTG	2 cut(s)	518, 1079
Cac8I	GCNNGC	4 cut(s)	164, 276, 844, 1072
CfoI	GCGC	3 cut(s)	6, 168, 181
Cfr13I	GGNCC	1 cut(s)	1222
CseI	GACGC	1 cut(s)	877
Csp6I	GTAC	4 cut(s)	344, 463, 473, 1160
CspCI	CAANNNNNGTGG	2 cut(s)	41, 76
CviAII	CATG	7 cut(s)	119, 468, 983, 1139, 1147, 1156, 1198
CviQI	GTAC	4 cut(s)	344, 463, 473, 1160
DdeI	CTNAG	3 cut(s)	291, 693, 834
DpnI	GATC	7 cut(s)	158, 187, 256, 447, 642, 731, 828
DpnII	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
DraI	TTTAAA	1 cut(s)	1014
DraIII	CACNNNGTG	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	1145
EarI	CTCTTC	1 cut(s)	1145
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	249
Eco32I	GATATC	2 cut(s)	106, 144
Eco47I	GGWCC	1 cut(s)	1222
Eco47III	AGCGCT	2 cut(s)	167, 180
Eco57I	CTGAAG	2 cut(s)	195, 360
Eco88I	CYCGRG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	1222
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	1216
EcoRV	GATATC	2 cut(s)	106, 144
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	1148
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	7 cut(s)	122, 471, 986, 1142, 1150, 1159, 1201
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	4 cut(s)	911, 1134, 1186, 1235
FatI	CATG	7 cut(s)	118, 467, 982, 1138, 1146, 1155, 1197
FauI	CCCGC	2 cut(s)	1045, 1079
Fnu4HI	GCNGC	5 cut(s)	36, 847, 1050, 1068, 1191
FokI	GGATG	1 cut(s)	1103
Fsp4HI	GCNGC	5 cut(s)	36, 847, 1050, 1068, 1191
GlaI	GCGC	3 cut(s)	5, 167, 180
GluI	GCNGC	5 cut(s)	36, 847, 1050, 1068, 1191
HaeII	RGCGCY	2 cut(s)	169, 182
HaeIII	GGCC	3 cut(s)	162, 393, 1137
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	877
HhaI	GCGC	3 cut(s)	6, 168, 181
Hin1II	CATG	7 cut(s)	122, 471, 986, 1142, 1150, 1159, 1201
Hin6I	GCGC	3 cut(s)	4, 166, 179
HinP1I	GCGC	3 cut(s)	4, 166, 179
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	80, 654
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	7 cut(s)	127, 381, 570, 605, 666, 955, 1268
Hpy188III	TCNNGA	5 cut(s)	646, 911, 920, 940, 992
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	5 cut(s)	291, 383, 681, 958, 1081
HpyCH4III	ACNGT	3 cut(s)	415, 522, 1083
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	7 cut(s)	230, 428, 541, 926, 1094, 1107, 1146
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 227, 622, 1049, 1058, 1067, 1143, 1152, 1187
HpyF3I	CTNAG	3 cut(s)	291, 693, 834
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	7 cut(s)	122, 471, 986, 1142, 1150, 1159, 1201
HspAI	GCGC	3 cut(s)	4, 166, 179
Kzo9I	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
LguI	GCTCTTC	1 cut(s)	1145
LmnI	GCTCC	3 cut(s)	613, 967, 1058
Lsp1109I	GCAGC	3 cut(s)	1054, 1061, 1177
LweI	GCATC	3 cut(s)	913, 1054, 1081
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	772, 884
MalI	GATC	7 cut(s)	158, 187, 256, 447, 642, 731, 828
MboI	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
MboII	GAAGA	5 cut(s)	79, 345, 555, 1042, 1162
MflI	RGATCY	2 cut(s)	254, 445
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	6 cut(s)	53, 476, 534, 555, 793, 1232
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	3 cut(s)	186, 689, 740
MnlI	CCTC	6 cut(s)	94, 363, 690, 808, 996, 1187
Mph1103I	ATGCAT	1 cut(s)	1148
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	1052
MspCI	CTTAAG	1 cut(s)	1226
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	1218
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	1218
MwoI	GCNNNNNNNGC	9 cut(s)	35, 227, 622, 1049, 1058, 1067, 1143, 1152, 1187
NdeII	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
NlaIII	CATG	7 cut(s)	122, 471, 986, 1142, 1150, 1159, 1201
NlaIV	GGNNCC	3 cut(s)	256, 745, 1223
NmuCI	GTSAC	1 cut(s)	772
NsiI	ATGCAT	1 cut(s)	1148
NspI	RCATGY	2 cut(s)	122, 986
PciSI	GCTCTTC	1 cut(s)	1145
PctI	GAATGC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	37, 848, 1051, 1069, 1192
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	1222
PshAI	GACNNNNGTC	1 cut(s)	1126
Psp5II	RGGWCCY	1 cut(s)	1222
Psp6I	CCWGG	1 cut(s)	1216
PspGI	CCWGG	1 cut(s)	1216
PspN4I	GGNNCC	3 cut(s)	256, 745, 1223
PspPI	GGNCC	1 cut(s)	1222
PspPPI	RGGWCCY	1 cut(s)	1222
PsuI	RGATCY	2 cut(s)	254, 445
RsaI	GTAC	4 cut(s)	345, 464, 474, 1161
RsaNI	GTAC	4 cut(s)	344, 463, 473, 1160
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	1145
SatI	GCNGC	5 cut(s)	36, 847, 1050, 1068, 1191
Sau3AI	GATC	7 cut(s)	156, 185, 254, 445, 640, 729, 826
Sau96I	GGNCC	1 cut(s)	1222
ScaI	AGTACT	1 cut(s)	345
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	1218
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	3 cut(s)	913, 1054, 1081
SinI	GGWCC	1 cut(s)	1222
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	3 cut(s)	438, 1000, 1226
SmoI	CTYRAG	3 cut(s)	438, 1000, 1226
Sse9I	AATT	6 cut(s)	53, 476, 534, 555, 793, 1232
SsiI	CCGC	8 cut(s)	11, 35, 38, 266, 846, 1052, 1072, 1193
StyD4I	CCNGG	1 cut(s)	1216
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	3 cut(s)	415, 522, 1083
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	25, 921
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	6 cut(s)	53, 476, 534, 555, 793, 1232
TatI	WGTACW	2 cut(s)	343, 462
TauI	GCSGC	2 cut(s)	38, 849
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	2 cut(s)	525, 1086
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	3 cut(s)	1049, 1067, 1190
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	3 cut(s)	402, 779, 1163
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	525, 1086
Vha464I	CTTAAG	1 cut(s)	1226
VpaK11BI	GGWCC	1 cut(s)	1222
XapI	RAATTY	3 cut(s)	555, 793, 1232
XceI	RCATGY	2 cut(s)	122, 986
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.