Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Forward (+)

24872803 .. 24875116

Gene Structure 2314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGCTTGAAGAAAGACCATCGTTTTTCAAGGTCCTAGTTGGTGACTTCTCCCAGCAACTGCGTATACCACATGCGTTTGTGAAGAACTTCAATGGTCGTGTACCACGAATGTGTGGCCTTAGAGGCCCTTGTGGAAACTTGTGGGCTGTGAATTTAAAAGAGATCGAGGATCGTGTGGTTTTCCATAAGGGTTGGCAGAGTTTTGCAAAGCATCATTTTCTGGAAGTTGGGGATTTCTTGACTTTCACTAAAGATGATGGATCAATTTTTGATGTCATAATTTATGATAAAAGCTACTGTGAGAAGAATGTTGAAGCAGCCAAGAGCAGGATTGGCAATGTTGTGGACAGAACAATTAACAACCACGTCATTTTAGGAAAGAGACCTGCACTTGATCTTGTGGAAGAAACATCTATTGGATCCATCTCTTTCAATCCGGAGAATCCATTTTTTACTACTATTTTTACTAGGTATACTCGATATGACCTGAGAATTCCAACCAAAGTAGTCATAGCTGCAGGTCTTATGAACACTAAAACTATAATGCTTCAAGATCCAACTGGGAGGCCATGGCCTATTAAACTCAACGAAACAACAATGGGTCAAATGCGTATGGAAGGCTGGTGTAATGTTTGTAAAGAGAACCAAATTTCATTTGGAGACACCCTTGTTATTGAGGTAGTCAAGCATTCTGTACTTCAACTCCATGTTTGTAAAGTAGGAGCAGCCCTGGATGTCGAAACTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

251

Amino Acids

28.55

Weight (kDa)

7.65

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 91	2.3e-13	B3 DNA binding domain
B3	PF02362	159 - 239	2.8e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	397, 512
AccI	GTMKAC	2 cut(s)	67, 476
AccIII	TCCGGA	1 cut(s)	439
AclWI	GGATC	5 cut(s)	180, 271, 417, 430, 551
AcsI	RAATTY	3 cut(s)	154, 495, 651
AfaI	GTAC	2 cut(s)	105, 699
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	7 cut(s)	11, 31, 94, 317, 436, 554, 704
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	732
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	7, 297, 518, 753
AluI	AGCT	4 cut(s)	7, 297, 518, 753
Alw26I	GTCTC	2 cut(s)	379, 657
AlwI	GGATC	5 cut(s)	180, 271, 417, 430, 551
AlwNI	CAGNNNCTG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	4 cut(s)	118, 127, 569, 575
ApeKI	GCWGC	3 cut(s)	320, 518, 728
ApoI	RAATTY	3 cut(s)	154, 495, 651
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	34, 128
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	332, 505, 740
BccI	CCATC	3 cut(s)	28, 254, 434
BciT130I	CCWGG	1 cut(s)	734
BcoDI	GTCTC	2 cut(s)	379, 657
BfaI	CTAG	3 cut(s)	38, 471, 754
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	2 cut(s)	397, 512
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	321, 519, 729
BlsI	GCNGC	3 cut(s)	322, 520, 730
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	34, 128
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	734
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	572, 732
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	572, 732
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	332, 505, 740
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	120, 129, 571, 577
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	379, 657
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	4 cut(s)	120, 129, 571, 577
Bso31I	GGTCTC	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
Bsp19I	CCATGG	1 cut(s)	572
BspANI	GGCC	4 cut(s)	120, 129, 571, 577
BspCNI	CTCAG	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	2 cut(s)	397, 512
BspPI	GGATC	5 cut(s)	180, 271, 417, 430, 551
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	572, 732
BssMI	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
BssNAI	GTATAC	2 cut(s)	68, 477
BssT1I	CCWWGG	1 cut(s)	572
Bst1107I	GTATAC	2 cut(s)	68, 477
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	122, 491
BstDSI	CCRYGG	1 cut(s)	572
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	6 cut(s)	168, 175, 266, 400, 425, 559
BstMAI	GTCTC	2 cut(s)	379, 657
BstMBI	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 336
BstNI	CCWGG	1 cut(s)	734
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	732
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	332, 505, 740
BstX2I	RGATCY	2 cut(s)	422, 556
BstYI	RGATCY	2 cut(s)	422, 556
BstZ17I	GTATAC	2 cut(s)	68, 477
BsuRI	GGCC	4 cut(s)	120, 129, 571, 577
BtgI	CCRYGG	1 cut(s)	572
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	742
BveI	ACCTGC	2 cut(s)	397, 512
CaiI	CAGNNNCTG	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	34, 128
Csp6I	GTAC	2 cut(s)	104, 698
CviAII	CATG	3 cut(s)	74, 573, 710
CviQI	GTAC	2 cut(s)	104, 698
DdeI	CTNAG	2 cut(s)	122, 491
DpnI	GATC	6 cut(s)	167, 174, 265, 399, 424, 558
DpnII	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
DraI	TTTAAA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	34
EcoO109I	RGGNCCY	2 cut(s)	34, 128
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	572
FaeI	CATG	3 cut(s)	77, 576, 713
FatI	CATG	3 cut(s)	73, 572, 709
FblI	GTMKAC	2 cut(s)	67, 476
Fnu4HI	GCNGC	3 cut(s)	321, 519, 729
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	321, 519, 729
FspBI	CTAG	3 cut(s)	38, 471, 754
GluI	GCNGC	3 cut(s)	321, 519, 729
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	4 cut(s)	120, 129, 571, 577
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	3 cut(s)	77, 576, 713
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	68, 104, 349, 477
Hpy188III	TCNNGA	4 cut(s)	224, 241, 440, 554
Hpy8I	GTNNAC	4 cut(s)	68, 104, 349, 477
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	209, 392, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 336
HpyF3I	CTNAG	2 cut(s)	122, 491
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	77, 576, 713
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
LmnI	GCTCC	2 cut(s)	4, 725
Lsp1109I	GCAGC	3 cut(s)	332, 505, 740
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	38, 471, 754
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	6 cut(s)	167, 174, 265, 399, 424, 558
MboI	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
MboII	GAAGA	4 cut(s)	23, 97, 319, 419
MflI	RGATCY	2 cut(s)	422, 556
MluCI	AATT	6 cut(s)	154, 267, 282, 357, 495, 651
MmeI	TCCRAC	2 cut(s)	524, 584
MnlI	CCTC	4 cut(s)	119, 163, 561, 673
MroI	TCCGGA	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	3 cut(s)	158, 360, 582
MslI	CAYNNNNRTG	1 cut(s)	112
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	734
MwoI	GCNNNNNNNGC	2 cut(s)	126, 336
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
NlaIII	CATG	3 cut(s)	77, 576, 713
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	77
OliI	CACNNNNGTG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	322, 520, 730
PpuMI	RGGWCCY	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	732
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	34, 128
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	422, 556
RsaI	GTAC	2 cut(s)	105, 699
RsaNI	GTAC	2 cut(s)	104, 698
RseI	CAYNNNNRTG	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	158, 360, 582
SatI	GCNGC	3 cut(s)	321, 519, 729
Sau3AI	GATC	6 cut(s)	165, 172, 263, 397, 422, 556
Sau96I	GGNCC	2 cut(s)	34, 128
ScrFI	CCNGG	1 cut(s)	734
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	519
SfiI	GGCCNNNNNGGCC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	112
Sse9I	AATT	6 cut(s)	154, 267, 282, 357, 495, 651
SspMI	CTAG	3 cut(s)	38, 471, 754
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	168, 481, 741
TasI	AATT	6 cut(s)	154, 267, 282, 357, 495, 651
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	3 cut(s)	158, 360, 582
Tru9I	TTAA	3 cut(s)	158, 360, 582
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	3 cut(s)	320, 518, 728
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	545, 645
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	154, 495, 651
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	67, 476
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	3 cut(s)	38, 471, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.