Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011070.1

Orthogroup ID

OG0002090

Physical Location & Seq

Genomic Coordinates Forward (+)

127 .. 2774

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011070.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atgccaacagttgtcactagagttcactgtcatgttatagttgcctgctcatttaacattttgcctgagtatctcctgttagaatgtggaatacatttcaagagcttagtaacttatttgttccgtatgtcgcgttctgttcagtcccttggatccttcattttagagtctttggacacaattcttgcagatctagcaagccagagagtcggtggaaagggtgccaagaagggtgtgcagcaagtagcatccaaatctcaggttgcagtatttactgttgtagcaatggtattgcgaagaaaacctgatgtcttgatcagtatattgccgacattgagggaaaattcaaagtatcaaggacaagacaatcttccagtaattgtatggatgatagttcaggctagtcaaggagacctggctgtggggttgtatgcatgggcacgcaatgtattgcctctagtttgtggcaaaaacagtaatccgcagtcccgtgatcttgttctgcagctagttgagagaattctgtctatgccaaaggctcgtaccattttagtaaatggtgctgtgaggaagggggagcgtttggtgccaccttctgcattggagatacttataggagtcacctttcctgcaccttcagctagagtaaaggctactgaaaggttcgaggctgtatatccgaccctaaaggacgtggctcttgctggctcacaaggaagcaaagcgatgaaacaagtttcacagcaaatattgagttttgctgttaaagctgccggagaagcaagtacacctgagttatccaatgaagcagctggaattttcatttggtgtttgacccaaagtgctgaatgtttcaggcagtgggacaaggtttatgaaggaaacctaagagcaagtgtcactgttctgaaaaagctttctgatcagtggaaagagcatgctgcaaaaatctctcctcttgatcctatgagggaaaccctcagaagttttaggcacaagaatgagaaggcattggagggtgaggccgaatctgcagagcaagagcgacttgtcaaggatgcagacaagtattgtaagacgttactgggaaagctatcacgcggcagtgggtgcaagaaaagtgtggcatttattgtccttgctttggccgttggtgcagctgtggtgtccccaaacatggagtcttgggattggaacaaactaacagtgtttttcagctctgaaaacccatttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM214

Protein Analysis

412

Amino Acids

45.26

Weight (kDa)

9.4

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23170 AT1G23170 AT1G70770 AT1G70770 AT2G18070
fragaria_vesca	FvH4_1g28730 FvH4_1g28730 FvH4_1g28730 FvH4_4g34080 FvH4_4g34080
malus_domestica	MD00G1185200.v1.1 MD09G1264000.v1.1 MD13G1022000.v1.1 MD16G1023000.v1.1
prunus_persica	Prupe.1G329900_v2.0.a1 Prupe.3G161600_v2.0.a1
pyrus_communis	pycom09g17790 pycom13g02050 pycom16g02030
rosa_chinensis	RchiOBHm_Chr3g0493091 RchiOBHm_Chr4g0443601
rosa_laevigata	RLG00000005911 RLG00000022728
rosa_multiflora	Rmu_co8042210.1_g000001 Rmu_sc0003941.1_g000023 Rmu_sc0006117.1_g000001 Rmu_sc0011070.1_g000001 Rmu_sc0026347.1_g000004 Rmu_sc0034766.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384150 Rroxscaffold_6G00391870
rosa_rugosa	Rorug03G0258900
rosa_samantha	Rh3AG308100 Rh3BG343900 Rh3CG341200 Rh3DG343400 Rh4AG403400 Rh4AG405300 Rh4BG416300 Rh4CG430800 Rh4DG410700 Rh4DG411900
rosa_wichuraiana	Rw3G027090 Rw4G034800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 586
AccII	CGCG	2 cut(s)	133, 1101
AciI	CCGC	2 cut(s)	482, 1101
AclWI	GGATC	3 cut(s)	147, 160, 956
AcoI	YGGCCR	1 cut(s)	1146
AcsI	RAATTY	3 cut(s)	343, 519, 816
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	544, 787
AfiI	CCNNNNNNNGG	3 cut(s)	421, 1144, 1177
AgsI	TTSAA	2 cut(s)	100, 348
AjiI	CACGTC	1 cut(s)	694
AjnI	CCWGG	1 cut(s)	414
AjuI	GAANNNNNNNTTGG	2 cut(s)	808, 840
AluBI	AGCT	9 cut(s)	105, 508, 641, 770, 812, 916, 1093, 1160, 1218
AluI	AGCT	9 cut(s)	105, 508, 641, 770, 812, 916, 1093, 1160, 1218
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	147, 160, 956
AoxI	GGCC	2 cut(s)	1023, 1146
ApeKI	GCWGC	6 cut(s)	238, 505, 770, 809, 941, 1157
ApoI	RAATTY	3 cut(s)	343, 519, 816
ArsI	GACNNNNNNTTYG	2 cut(s)	1166, 1198
AsuHPI	GGTGA	2 cut(s)	613, 1031
BaeGI	GKGCMC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	152
BanI	GGYRCC	2 cut(s)	221, 586
BbvI	GCAGC	6 cut(s)	250, 517, 757, 821, 928, 1169
BceAI	ACGGC	1 cut(s)	1133
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	2 cut(s)	315, 922
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	6 cut(s)	18, 194, 402, 458, 509, 642
BfmI	CTRYAG	2 cut(s)	503, 1032
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	7 cut(s)	239, 506, 771, 810, 942, 1102, 1158
BlsI	GCNGC	7 cut(s)	240, 507, 772, 811, 943, 1103, 1159
Bme1390I	CCNGG	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	694
BmiI	GGNNCC	3 cut(s)	154, 223, 588
BmrFI	CCNGG	1 cut(s)	416
BmrI	ACTGGG	1 cut(s)	1094
BmsI	GCATC	2 cut(s)	257, 1048
BmuI	ACTGGG	1 cut(s)	1094
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 1144, 1177
Bse1I	ACTGG	2 cut(s)	374, 1089
Bse3DI	GCAATG	2 cut(s)	291, 451
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	3 cut(s)	248, 393, 1063
BseLI	CCNNNNNNNGG	3 cut(s)	421, 1144, 1177
BseMI	GCAATG	2 cut(s)	291, 451
BseMII	CTCAG	4 cut(s)	57, 272, 783, 994
BseNI	ACTGG	2 cut(s)	374, 1089
BseRI	GAGGAG	1 cut(s)	945
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	6 cut(s)	250, 517, 757, 821, 928, 1169
BsgI	GTGCAG	3 cut(s)	257, 615, 1176
Bsh1236I	CGCG	2 cut(s)	133, 1101
BshFI	GGCC	2 cut(s)	1025, 1148
BshNI	GGYRCC	2 cut(s)	221, 586
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	4 cut(s)	130, 472, 878, 1153
BslI	CCNNNNNNNGG	3 cut(s)	421, 1144, 1177
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	4 cut(s)	130, 472, 878, 1153
BsnI	GGCC	2 cut(s)	1025, 1148
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
BspACI	CCGC	2 cut(s)	482, 1101
BspANI	GGCC	2 cut(s)	1025, 1148
BspCNI	CTCAG	4 cut(s)	58, 271, 784, 993
BspFNI	CGCG	2 cut(s)	133, 1101
BspLI	GGNNCC	3 cut(s)	154, 223, 588
BspMAI	CTGCAG	2 cut(s)	507, 1036
BspPI	GGATC	3 cut(s)	147, 160, 956
BspT107I	GGYRCC	2 cut(s)	221, 586
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	291, 451
BsrI	ACTGG	2 cut(s)	374, 1089
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	6 cut(s)	10, 29, 277, 476, 904, 1207
BstAPI	GCANNNNNTGC	1 cut(s)	1110
BstC8I	GCNNGC	5 cut(s)	46, 199, 442, 706, 939
BstDEI	CTNAG	6 cut(s)	66, 106, 258, 792, 887, 980
BstF5I	GGATG	3 cut(s)	248, 393, 1063
BstFNI	CGCG	2 cut(s)	133, 1101
BstKTI	GATC	6 cut(s)	155, 193, 318, 496, 925, 964
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
BstMWI	GCNNNNNNNGC	8 cut(s)	194, 586, 638, 767, 779, 1031, 1110, 1154
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	503, 1032
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	2 cut(s)	133, 1101
BstV1I	GCAGC	6 cut(s)	250, 517, 757, 821, 928, 1169
BstX2I	RGATCY	2 cut(s)	152, 190
BstYI	RGATCY	2 cut(s)	152, 190
BsuRI	GGCC	2 cut(s)	1025, 1148
BtgZI	GCGATG	1 cut(s)	740
BtrI	CACGTC	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	248, 393, 1063
BtsI	GCAGTG	2 cut(s)	866, 1111
BtsIMutI	CAGTG	6 cut(s)	25, 866, 900, 932, 1111, 1212
Cac8I	GCNNGC	5 cut(s)	46, 199, 442, 706, 939
Csp6I	GTAC	2 cut(s)	543, 786
CviAII	CATG	4 cut(s)	32, 435, 938, 1177
CviQI	GTAC	2 cut(s)	543, 786
DdeI	CTNAG	6 cut(s)	66, 106, 258, 792, 887, 980
DpnI	GATC	6 cut(s)	154, 192, 317, 495, 924, 963
DpnII	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
EaeI	YGGCCR	1 cut(s)	1146
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	35, 438, 941, 1180
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 1032, 1064
FaqI	GGGAC	4 cut(s)	130, 472, 878, 1153
FatI	CATG	4 cut(s)	31, 434, 937, 1176
FbaI	TGATCA	2 cut(s)	315, 922
Fnu4HI	GCNGC	7 cut(s)	239, 506, 771, 810, 942, 1102, 1158
FokI	GGATG	3 cut(s)	235, 400, 1070
Fsp4HI	GCNGC	7 cut(s)	239, 506, 771, 810, 942, 1102, 1158
FspBI	CTAG	6 cut(s)	18, 194, 402, 458, 509, 642
GluI	GCNGC	7 cut(s)	239, 506, 771, 810, 942, 1102, 1158
HaeIII	GGCC	2 cut(s)	1025, 1148
HapII	CCGG	1 cut(s)	774
Hin1II	CATG	4 cut(s)	35, 438, 941, 1180
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	5 cut(s)	167, 207, 618, 1028, 1181
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	2 cut(s)	613, 1031
Hpy166II	GTNNAC	2 cut(s)	25, 788
Hpy188I	TCNGA	5 cut(s)	681, 909, 922, 983, 1222
Hpy188III	TCNNGA	3 cut(s)	100, 313, 959
Hpy8I	GTNNAC	2 cut(s)	25, 788
HpyAV	CCTTC	7 cut(s)	166, 223, 565, 603, 645, 872, 1000
HpyCH4III	ACNGT	6 cut(s)	10, 29, 277, 476, 904, 1207
HpyCH4IV	ACGT	2 cut(s)	693, 1079
HpyF10VI	GCNNNNNNNGC	8 cut(s)	194, 586, 638, 767, 779, 1031, 1110, 1154
HpyF3I	CTNAG	6 cut(s)	66, 106, 258, 792, 887, 980
HpySE526I	ACGT	2 cut(s)	693, 1079
Hsp92II	CATG	4 cut(s)	35, 438, 941, 1180
Ksp22I	TGATCA	2 cut(s)	315, 922
Kzo9I	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	6 cut(s)	250, 517, 757, 821, 928, 1169
LweI	GCATC	2 cut(s)	257, 1048
MaeI	CTAG	6 cut(s)	18, 194, 402, 458, 509, 642
MaeII	ACGT	2 cut(s)	693, 1079
MaeIII	GTNAC	5 cut(s)	13, 109, 619, 898, 1080
MalI	GATC	6 cut(s)	154, 192, 317, 495, 924, 963
MboI	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
MboII	GAAGA	2 cut(s)	309, 362
MflI	RGATCY	2 cut(s)	152, 190
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	5 cut(s)	180, 343, 378, 519, 816
MlyI	GAGTC	4 cut(s)	176, 216, 627, 1190
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	9 cut(s)	330, 465, 561, 661, 963, 966, 989, 1009, 1015
Mph1103I	ATGCAT	1 cut(s)	436
MseI	TTAA	2 cut(s)	54, 765
MslI	CAYNNNNRTG	2 cut(s)	30, 999
MspA1I	CMGCKG	2 cut(s)	812, 1160
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	2 cut(s)	133, 1101
MwoI	GCNNNNNNNGC	8 cut(s)	194, 586, 638, 767, 779, 1031, 1110, 1154
NdeII	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
NlaIII	CATG	4 cut(s)	35, 438, 941, 1180
NlaIV	GGNNCC	3 cut(s)	154, 223, 588
NmuCI	GTSAC	3 cut(s)	13, 619, 898
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	1 cut(s)	941
PaeI	GCATGC	1 cut(s)	941
PfeI	GAWTC	1 cut(s)	1028
PkrI	GCNGC	7 cut(s)	240, 507, 772, 811, 943, 1103, 1159
PleI	GAGTC	4 cut(s)	175, 215, 626, 1189
PpsI	GAGTC	4 cut(s)	175, 215, 626, 1189
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	3 cut(s)	154, 223, 588
PsrI	GAACNNNNNNTAC	2 cut(s)	118, 150
PstI	CTGCAG	2 cut(s)	507, 1036
PsuI	RGATCY	2 cut(s)	152, 190
PvuII	CAGCTG	2 cut(s)	812, 1160
RsaI	GTAC	2 cut(s)	544, 787
RsaNI	GTAC	2 cut(s)	543, 786
RseI	CAYNNNNRTG	2 cut(s)	30, 999
SaqAI	TTAA	2 cut(s)	54, 765
SatI	GCNGC	7 cut(s)	239, 506, 771, 810, 942, 1102, 1158
Sau3AI	GATC	6 cut(s)	152, 190, 315, 493, 922, 961
SchI	GAGTC	4 cut(s)	176, 216, 627, 1190
ScrFI	CCNGG	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	257, 1048
SfcI	CTRYAG	2 cut(s)	503, 1032
SmiMI	CAYNNNNRTG	2 cut(s)	30, 999
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	5 cut(s)	180, 343, 378, 519, 816
SsiI	CCGC	2 cut(s)	482, 1101
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	6 cut(s)	18, 194, 402, 458, 509, 642
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	6 cut(s)	10, 29, 277, 476, 904, 1207
TaiI	ACGT	2 cut(s)	696, 1082
TaqI	TCGA	1 cut(s)	666
TasI	AATT	5 cut(s)	180, 343, 378, 519, 816
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	1 cut(s)	1104
TfiI	GAWTC	1 cut(s)	1028
Tru1I	TTAA	2 cut(s)	54, 765
Tru9I	TTAA	2 cut(s)	54, 765
TscAI	CASTG	6 cut(s)	32, 866, 907, 932, 1111, 1212
TseFI	GTSAC	3 cut(s)	13, 619, 898
TseI	GCWGC	6 cut(s)	238, 505, 770, 809, 941, 1157
Tsp45I	GTSAC	3 cut(s)	13, 619, 898
TspDTI	ATGAA	5 cut(s)	148, 743, 811, 819, 891
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	6 cut(s)	32, 866, 907, 932, 1111, 1212
XapI	RAATTY	3 cut(s)	343, 519, 816
XceI	RCATGY	1 cut(s)	941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 381
XspI	CTAG	6 cut(s)	18, 194, 402, 458, 509, 642
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.