Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Forward (+)

8080354 .. 8082901

Gene Structure 2548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATGGGAGGAAAATCTAGCAAGAGCAAAAAGAATGTTGAATTTGGTTCACCGTCAACGCCAGTTCAAATCAAGATAAACTCAGAGTACACAGAGCATTTAAGCTCATACGAAAGAGCTTGTAGTGAAGATCCAAAGCTTGAATCTTTTGACTCTGCGCTTCACGAAAGAACTAACAGAGTCATCAACAAGCTTGCTTCAGGAGTTGAGATCAAGTCTTTGTCGTTTGATTCACTTAGGGAAGTGACACAATGTCTTTTAGATATGAATCAAGATGTGGTCAAAGTTATATTGCAGGATAAAGAAGATATATGGAACAATCAAGATTTGTTCTCTCTTGTGAATTTGTATTTTGAAAGTACTGCAAAGACTATGGATTTCTGTTCTGAGCTTGAGAATTGTCTTAACCGCGCGAGGCGGAGTCAAGTGATTATTCAGTTTGCTGTTAACCAGTTTGAGGAAGAGAATGAGGATAAGGAGAATAGAAAGTATGAGAAGACTCTTGAGGAGCTTAAGAGGTTTAAAGTAGCTGGTGAACCGTTTACGAAAGAGTTCTTTGCTCTTTTTGATTTGGTTTACAAGCAACAGGTTATGATGCTTGAGGAGCTTCATAAGTTAAAGAGAAAACTCGATAAGAGGCTTAGGAATATCAAAACATGGAGAAGGGTGTCGAATATGGTGTTTGTGACTGCGTTTGTCTCTGTGCTTATCTTCTCGGTGGTTGCAGCCGCTGTGGCTGCACCGCCTGTTGTGGCGGCTATAGCTGGTGCATTGGCTGTTCCTGTAGGTTCTGTTGGGAAATGGTGCAACACTTTGTGGACGAAGTATGAGAAAGTGGTTAGAGGGCAGAAGGAGATTATTACATCGATTAGAATCGGGACTTATATCTCGGTTAAGGAGATGGATAATATAAGTATTCTTGTGCGTAAAGTGGAAGTAGAGATTGAATCTTTGTTGAAGAAAGCTGAGTTTGCTATTACTGAGGAGAAAGAAGTGAGGCTTGCTATAGATGAGATCAAGAAGAAGCTCGATGTGTTTACTGAAACCATTGAAGAACTTGGGGAACATGCGGGTAAGTATTGTAGCGATGTGACAAAGGCGAGAACCGTGATTCTGCAGAGGATAATCCGATACCCGGCTGGTTCACCGAAGGATGAAGCTCCTTGGACGGAGATGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

393

Amino Acids

45.01

Weight (kDa)

6.94

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	40 - 171	4.8e-06	Protein ROH1-like
DUF677	PF05055	47 - 375	3.1e-152	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	411, 413
AciI	CCGC	6 cut(s)	409, 418, 729, 743, 755, 1070
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	41, 343
AcuI	CTGAAG	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	816
AfaI	GTAC	2 cut(s)	89, 361
AfiI	CCNNNNNNNGG	2 cut(s)	457, 1135
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	7 cut(s)	41, 68, 143, 356, 947, 958, 1052
AhdI	GACNNNNNGTC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	731
ApeKI	GCWGC	2 cut(s)	725, 737
ApoI	RAATTY	2 cut(s)	41, 343
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	160, 413
AsuC2I	CCSGG	1 cut(s)	1136
AsuHPI	GGTGA	3 cut(s)	42, 545, 1137
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	724, 737
BccI	CCATC	1 cut(s)	895
BcnI	CCSGG	1 cut(s)	1136
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	4 cut(s)	759, 783, 1005, 1115
BfrI	CTTAAG	1 cut(s)	512
BglI	GCCNNNNNGGC	1 cut(s)	734
BisI	GCNGC	4 cut(s)	726, 729, 738, 756
BlsI	GCNGC	4 cut(s)	727, 730, 739, 757
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	1136
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	1136
BmsI	GCATC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	641
BpuEI	CTTGAG	3 cut(s)	413, 524, 620
BpuMI	CCSGG	1 cut(s)	1136
Bsa29I	ATCGAT	1 cut(s)	866
BsaBI	GATNNNNATC	2 cut(s)	267, 872
BsaJI	CCNNGG	1 cut(s)	1163
BsaXI	ACNNNNNCTCC	1 cut(s)	1163
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 1135
Bse1I	ACTGG	2 cut(s)	62, 451
Bse8I	GATNNNNATC	2 cut(s)	267, 872
BseCI	ATCGAT	1 cut(s)	866
BseDI	CCNNGG	1 cut(s)	1163
BseGI	GGATG	1 cut(s)	1159
BseJI	GATNNNNATC	2 cut(s)	267, 872
BseLI	CCNNNNNNNGG	2 cut(s)	457, 1135
BseMII	CTCAG	4 cut(s)	96, 378, 957, 972
BseNI	ACTGG	2 cut(s)	62, 451
BseRI	GAGGAG	3 cut(s)	521, 617, 998
BseXI	GCAGC	2 cut(s)	724, 737
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	2 cut(s)	411, 413
BshVI	ATCGAT	1 cut(s)	866
BsiSI	CCGG	1 cut(s)	1136
BslFI	GGGAC	1 cut(s)	892
BslI	CCNNNNNNNGG	2 cut(s)	457, 1135
BsmAI	GTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	892
Bsp143I	GATC	3 cut(s)	130, 210, 1014
BspACI	CCGC	6 cut(s)	409, 418, 729, 743, 755, 1070
BspCNI	CTCAG	4 cut(s)	95, 379, 958, 973
BspDI	ATCGAT	1 cut(s)	866
BspFNI	CGCG	2 cut(s)	411, 413
BspMAI	CTGCAG	1 cut(s)	1119
BspPI	GGATC	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	62, 451
BssECI	CCNNGG	1 cut(s)	1163
BssMI	GATC	3 cut(s)	130, 210, 1014
BssT1I	CCWWGG	1 cut(s)	1163
Bst4CI	ACNGT	3 cut(s)	54, 540, 1108
Bst6I	CTCTTC	1 cut(s)	456
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	195, 1002
BstDEI	CTNAG	6 cut(s)	82, 236, 387, 641, 966, 981
BstF5I	GGATG	1 cut(s)	1159
BstFNI	CGCG	2 cut(s)	411, 413
BstHHI	GCGC	2 cut(s)	160, 413
BstKTI	GATC	3 cut(s)	133, 213, 1017
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	3 cut(s)	130, 210, 1014
BstMWI	GCNNNNNNNGC	5 cut(s)	604, 734, 737, 761, 971
BstNSI	RCATGY	1 cut(s)	1070
BstSCI	CCNGG	1 cut(s)	1134
BstSFI	CTRYAG	4 cut(s)	759, 783, 1005, 1115
BstUI	CGCG	2 cut(s)	411, 413
BstV1I	GCAGC	2 cut(s)	724, 737
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	866
BsuTUI	ATCGAT	1 cut(s)	866
BtgZI	GCGATG	1 cut(s)	1101
BtsCI	GGATG	1 cut(s)	1159
Cac8I	GCNNGC	2 cut(s)	195, 1002
CaiI	CAGNNNCTG	1 cut(s)	731
CfoI	GCGC	2 cut(s)	160, 413
ClaI	ATCGAT	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	88, 360
CviAII	CATG	2 cut(s)	657, 1067
CviQI	GTAC	2 cut(s)	88, 360
DdeI	CTNAG	6 cut(s)	82, 236, 387, 641, 966, 981
DpnI	GATC	3 cut(s)	132, 212, 1016
DpnII	GATC	3 cut(s)	130, 210, 1014
DraI	TTTAAA	1 cut(s)	523
DraIII	CACNNNGTG	1 cut(s)	816
DriI	GACNNNNNGTC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	1163
Eco57I	CTGAAG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	1163
ErhI	CCWWGG	1 cut(s)	1163
FaeI	CATG	2 cut(s)	660, 1070
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	1 cut(s)	892
FatI	CATG	2 cut(s)	656, 1066
FauI	CCCGC	1 cut(s)	1063
Fnu4HI	GCNGC	4 cut(s)	726, 729, 738, 756
FokI	GGATG	1 cut(s)	1166
Fsp4HI	GCNGC	4 cut(s)	726, 729, 738, 756
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	159, 412
GluI	GCNGC	4 cut(s)	726, 729, 738, 756
HapII	CCGG	1 cut(s)	1136
HhaI	GCGC	2 cut(s)	160, 413
Hin1II	CATG	2 cut(s)	660, 1070
Hin6I	GCGC	2 cut(s)	158, 411
HinP1I	GCGC	2 cut(s)	158, 411
HincII	GTYRAC	2 cut(s)	57, 448
HindII	GTYRAC	2 cut(s)	57, 448
HindIII	AAGCTT	2 cut(s)	137, 191
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	1136
HphI	GGTGA	3 cut(s)	42, 545, 1137
Hpy188I	TCNGA	3 cut(s)	85, 388, 1130
Hpy188III	TCNNGA	8 cut(s)	73, 164, 201, 272, 323, 503, 877, 1018
HpyAV	CCTTC	3 cut(s)	657, 844, 1144
HpyCH4III	ACNGT	3 cut(s)	54, 540, 1108
HpyCH4V	TGCA	7 cut(s)	295, 365, 725, 740, 770, 807, 1117
HpyF10VI	GCNNNNNNNGC	5 cut(s)	604, 734, 737, 761, 971
HpyF3I	CTNAG	6 cut(s)	82, 236, 387, 641, 966, 981
Hsp92II	CATG	2 cut(s)	660, 1070
HspAI	GCGC	2 cut(s)	158, 411
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	130, 210, 1014
LmnI	GCTCC	3 cut(s)	508, 604, 1165
Lsp1109I	GCAGC	2 cut(s)	724, 737
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	244, 685, 1090
MalI	GATC	3 cut(s)	132, 212, 1016
MboI	GATC	3 cut(s)	130, 210, 1014
MboII	GAAGA	8 cut(s)	140, 317, 473, 508, 703, 970, 1033, 1064
MflI	RGATCY	1 cut(s)	130
MluCI	AATT	3 cut(s)	41, 343, 397
MlyI	GAGTC	4 cut(s)	146, 189, 430, 493
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	7 cut(s)	101, 405, 447, 513, 522, 617, 894
MspA1I	CMGCKG	1 cut(s)	731
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	1 cut(s)	1136
MspR9I	CCNGG	1 cut(s)	1136
MvnI	CGCG	2 cut(s)	411, 413
MwoI	GCNNNNNNNGC	5 cut(s)	604, 734, 737, 761, 971
NciI	CCSGG	1 cut(s)	1136
NdeII	GATC	3 cut(s)	130, 210, 1014
NlaIII	CATG	2 cut(s)	660, 1070
NmuCI	GTSAC	3 cut(s)	244, 685, 1090
NspI	RCATGY	1 cut(s)	1070
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	6 cut(s)	143, 230, 268, 873, 947, 1111
PkrI	GCNGC	4 cut(s)	727, 730, 739, 757
PleI	GAGTC	4 cut(s)	146, 188, 429, 493
PpsI	GAGTC	4 cut(s)	146, 188, 429, 493
PstI	CTGCAG	1 cut(s)	1119
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	89, 361
RsaNI	GTAC	2 cut(s)	88, 360
SaqAI	TTAA	7 cut(s)	101, 405, 447, 513, 522, 617, 894
SatI	GCNGC	4 cut(s)	726, 729, 738, 756
Sau3AI	GATC	3 cut(s)	130, 210, 1014
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	4 cut(s)	146, 189, 430, 493
ScrFI	CCNGG	1 cut(s)	1136
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	4 cut(s)	759, 783, 1005, 1115
SmlI	CTYRAG	4 cut(s)	392, 503, 512, 599
SmoI	CTYRAG	4 cut(s)	392, 503, 512, 599
Sse9I	AATT	3 cut(s)	41, 343, 397
SsiI	CCGC	6 cut(s)	409, 418, 729, 743, 755, 1070
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	1134
StyI	CCWWGG	1 cut(s)	1163
TaaI	ACNGT	3 cut(s)	54, 540, 1108
TaqI	TCGA	4 cut(s)	630, 671, 866, 1029
TasI	AATT	3 cut(s)	41, 343, 397
TatI	WGTACW	2 cut(s)	87, 359
TauI	GCSGC	2 cut(s)	731, 758
TfiI	GAWTC	6 cut(s)	143, 230, 268, 873, 947, 1111
Tru1I	TTAA	7 cut(s)	101, 405, 447, 513, 522, 617, 894
Tru9I	TTAA	7 cut(s)	101, 405, 447, 513, 522, 617, 894
TseFI	GTSAC	3 cut(s)	244, 685, 1090
TseI	GCWGC	2 cut(s)	725, 737
Tsp45I	GTSAC	3 cut(s)	244, 685, 1090
TspDTI	ATGAA	3 cut(s)	281, 599, 1170
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	2 cut(s)	41, 343
XceI	RCATGY	1 cut(s)	1070
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.