Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Reverse (-)

78603476 .. 78604645

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGATGGGAGGAAACTGCAGTAAAAACAAAGGTGTTGATGCTCCACCACCCCCGCCGCCGCCGCAGCCACTGCCACAACAGCCCGTCGAAAACAATACCAAATCCGAGTACACATCCCATTTGAGCTCTTATGAGGCAGCCTGTAAGCTCGATTCGGGTTTACAATCGTTTGATGTATCTCTCCAACAGCGCACTAGCCGAGTCTTCAACTCACTTTCCACTGGAGTTGAAGTTAGGTCCTTATCTTTGGACTCACTCAAGGAGGTCACTGATTGTTTGCTTGAGATGAACCAGGAAGTGGTCAGTGTCATTCTCGAATGCAAGAAGGATGTATGGAACAATCAAGAGATGTTCTCTCTAGTGGAGGAGTACTTTGAGAACAGTCTCCAGACATTGGACTTCTGTACTGCCCTCGAGAGATGTCTCAAGCGTGCAGTGAACAATCAGCTGATAATTCAGGCTGCGGTGAGGCGGTTTGAGGAAGAAGTAGAAGCTGGTTTCGAAGGGAAGGGGTGTGTGAGGACATTGCAGGAGTTGAGGGCATTTAAGGCAGCCGGAGACCCTTTCACGGAGGAGTTCTTTGTACTATTTCAGGCAGTTTATAACCAACAGGCATCGATGCTCCAGAAATTGCAAGTCCGAAAGAGAAAGCTTGATAAGAAGTTGAAATCAGTGAAAGCTTGGCGGAAAGTGTCAAATGTTATTTTTGTTGCCACTTTTGTGTCTGTATTGATATTTTCGGTGGTGGCAGCTGCCATTGCTGCACCGCCACTTGTAACCGCCTTGGCAGGTGCACTGGCCGTTCCAATAGGTTCTGTTGGAAAATGGTGTAATATACTTTGGAGCCGCTATGAGAAGGCTCTGAAGGGGCAGAGGGAGATAATAAGCTCAATGCAGGTTGGAAGTATGATCACAATGACAGACTTGAACAACATCAGGGTGCTTGTTGAGAAATTTGAAATCGAGATTGAGGCATTGCTGCAGAATGCTGACTTTGCTATTAGAGAAGAGGATGCTGTGAAGATAGTGATGATTGAGATCAACAAAAAGCTGGAAAATTTTATGGAAACCATTGAAAGTTTAAGCCAAAACGCTGATAAGTGTGGCCGGAATATAAGGAAGGCAAGGACAGTGATTTTGCAGAGAATAATTAGGCATCCCATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

389

Amino Acids

43.73

Weight (kDa)

8.28

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	54 - 383	1.4e-130	Protein of unknown function (DUF677)
ROH1-like	PF05633	54 - 162	7e-07	Protein ROH1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	2 cut(s)	779, 886
AccB7I	CCANNNNNTGG	2 cut(s)	298, 394
AcoI	YGGCCR	2 cut(s)	798, 1105
AcsI	RAATTY	2 cut(s)	953, 1057
AcuI	CTGAAG	1 cut(s)	884
AfaI	GTAC	4 cut(s)	110, 371, 406, 585
AfiI	CCNNNNNNNGG	3 cut(s)	298, 394, 568
AgsI	TTSAA	6 cut(s)	208, 230, 667, 928, 959, 1076
AjnI	CCWGG	1 cut(s)	291
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	9 cut(s)	126, 148, 448, 494, 652, 680, 752, 888, 1051
AluI	AGCT	9 cut(s)	126, 148, 448, 494, 652, 680, 752, 888, 1051
Alw21I	GWGCWC	2 cut(s)	128, 796
Alw26I	GTCTC	3 cut(s)	389, 428, 552
Alw44I	GTGCAC	1 cut(s)	792
AlwNI	CAGNNNCTG	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	798, 1105
ApaLI	GTGCAC	1 cut(s)	792
ApeKI	GCWGC	8 cut(s)	64, 137, 461, 551, 749, 752, 761, 979
ApoI	RAATTY	2 cut(s)	953, 1057
ArsI	GACNNNNNNTTYG	2 cut(s)	1120, 1152
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	478
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	2 cut(s)	128, 796
BbvI	GCAGC	8 cut(s)	76, 149, 448, 563, 739, 748, 761, 966
BccI	CCATC	1 cut(s)	1169
BceAI	ACGGC	1 cut(s)	785
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	1 cut(s)	909
BcoDI	GTCTC	3 cut(s)	389, 428, 552
BfaI	CTAG	2 cut(s)	195, 359
BfmI	CTRYAG	2 cut(s)	16, 980
BfuAI	ACCTGC	2 cut(s)	779, 886
BmcAI	AGTACT	1 cut(s)	371
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	5 cut(s)	28, 609, 623, 1003, 1165
BpiI	GAAGAC	1 cut(s)	196
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	3 cut(s)	243, 371, 608
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	3 cut(s)	242, 302, 410
Bsa29I	ATCGAT	1 cut(s)	617
BsaBI	GATNNNNATC	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	783
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 394, 568
Bse1I	ACTGG	2 cut(s)	226, 801
Bse3DI	GCAATG	3 cut(s)	524, 756, 974
Bse8I	GATNNNNATC	1 cut(s)	1037
BseBI	CCWGG	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	4 cut(s)	113, 334, 1018, 1156
BseJI	GATNNNNATC	1 cut(s)	1037
BseLI	CCNNNNNNNGG	3 cut(s)	298, 394, 568
BseMI	GCAATG	3 cut(s)	524, 756, 974
BseNI	ACTGG	2 cut(s)	226, 801
BseRI	GAGGAG	2 cut(s)	380, 587
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	8 cut(s)	76, 149, 448, 563, 739, 748, 761, 966
BsgI	GTGCAG	2 cut(s)	453, 747
BshFI	GGCC	2 cut(s)	800, 1107
BshVI	ATCGAT	1 cut(s)	617
BsiHKAI	GWGCWC	2 cut(s)	128, 796
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	555, 1108
BslI	CCNNNNNNNGG	3 cut(s)	298, 394, 568
BsmAI	GTCTC	3 cut(s)	389, 428, 552
BsmI	GAATGC	2 cut(s)	323, 991
BsnI	GGCC	2 cut(s)	800, 1107
Bso31I	GGTCTC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	128, 796
Bsp143I	GATC	2 cut(s)	909, 1038
BspANI	GGCC	2 cut(s)	800, 1107
BspDI	ATCGAT	1 cut(s)	617
BspLI	GGNNCC	1 cut(s)	845
BspMAI	CTGCAG	2 cut(s)	20, 984
BspMI	ACCTGC	2 cut(s)	779, 886
BspT104I	TTCGAA	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	552
BsrDI	GCAATG	3 cut(s)	524, 756, 974
BsrI	ACTGG	2 cut(s)	226, 801
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	2 cut(s)	909, 1038
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	383, 1132
Bst6I	CTCTTC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	432
BstF5I	GGATG	4 cut(s)	113, 334, 1018, 1156
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	912, 1041
BstMAI	GTCTC	3 cut(s)	389, 428, 552
BstMBI	GATC	2 cut(s)	909, 1038
BstMWI	GCNNNNNNNGC	8 cut(s)	61, 64, 70, 79, 548, 758, 761, 995
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	16, 980
BstSLI	GKGCMC	1 cut(s)	796
BstV1I	GCAGC	8 cut(s)	76, 149, 448, 563, 739, 748, 761, 966
BstV2I	GAAGAC	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	800, 1107
BsuTUI	ATCGAT	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	113, 334, 1018, 1156
BtsI	GCAGTG	2 cut(s)	68, 441
BtsIMutI	CAGTG	8 cut(s)	68, 219, 267, 310, 441, 678, 794, 1137
BveI	ACCTGC	2 cut(s)	779, 886
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	617
Csp6I	GTAC	4 cut(s)	109, 370, 405, 584
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviQI	GTAC	4 cut(s)	109, 370, 405, 584
DpnI	GATC	2 cut(s)	911, 1040
DpnII	GATC	2 cut(s)	909, 1038
EaeI	YGGCCR	2 cut(s)	798, 1105
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
EciI	GGCGGA	1 cut(s)	700
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	884
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	783
FaiI	YATR	8 cut(s)	132, 334, 603, 836, 852, 908, 1064, 1115
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	909
FokI	GGATG	4 cut(s)	100, 341, 1025, 1143
FriOI	GRGCYC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	195, 359
GlaI	GCGC	1 cut(s)	191
GsuI	CTGGAG	3 cut(s)	243, 371, 608
HaeIII	GGCC	2 cut(s)	800, 1107
HapII	CCGG	2 cut(s)	555, 1108
HhaI	GCGC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	650, 678
HinfI	GANTC	3 cut(s)	152, 201, 251
HpaII	CCGG	2 cut(s)	555, 1108
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	4 cut(s)	111, 161, 439, 794
Hpy188I	TCNGA	3 cut(s)	106, 641, 864
Hpy188III	TCNNGA	6 cut(s)	314, 344, 388, 415, 625, 964
Hpy8I	GTNNAC	4 cut(s)	111, 161, 439, 794
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	6 cut(s)	319, 497, 502, 850, 859, 1114
HpyCH4III	ACNGT	2 cut(s)	383, 1132
HpyF10VI	GCNNNNNNNGC	8 cut(s)	61, 64, 70, 79, 548, 758, 761, 995
HspAI	GCGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	2 cut(s)	909, 1038
LmnI	GCTCC	3 cut(s)	46, 627, 843
Lsp1109I	GCAGC	8 cut(s)	76, 149, 448, 563, 739, 748, 761, 966
LweI	GCATC	5 cut(s)	28, 609, 623, 1003, 1165
MaeI	CTAG	2 cut(s)	195, 359
MaeIII	GTNAC	2 cut(s)	265, 775
MalI	GATC	2 cut(s)	911, 1040
MboI	GATC	2 cut(s)	909, 1038
MboII	GAAGA	4 cut(s)	196, 494, 1019, 1033
MhlI	GDGCHC	2 cut(s)	128, 796
MluCI	AATT	5 cut(s)	453, 629, 953, 1057, 1149
MlyI	GAGTC	2 cut(s)	210, 245
MmeI	TCCRAC	3 cut(s)	208, 799, 880
MseI	TTAA	2 cut(s)	546, 1082
MslI	CAYNNNNRTG	2 cut(s)	719, 938
MspA1I	CMGCKG	2 cut(s)	448, 752
MspI	CCGG	2 cut(s)	555, 1108
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	2 cut(s)	323, 991
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	8 cut(s)	61, 64, 70, 79, 548, 758, 761, 995
NdeII	GATC	2 cut(s)	909, 1038
NlaIV	GGNNCC	1 cut(s)	845
NmeAIII	GCCGAG	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	719
PaeR7I	CTCGAG	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	779
PctI	GAATGC	2 cut(s)	323, 991
PfeI	GAWTC	1 cut(s)	152
PflMI	CCANNNNNTGG	2 cut(s)	298, 394
PleI	GAGTC	2 cut(s)	209, 245
PpsI	GAGTC	2 cut(s)	209, 245
PpuMI	RGGWCCY	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	845
PspPI	GGNCC	1 cut(s)	237
PspPPI	RGGWCCY	1 cut(s)	237
PstI	CTGCAG	2 cut(s)	20, 984
PstNI	CAGNNNCTG	1 cut(s)	70
PvuII	CAGCTG	2 cut(s)	448, 752
RsaI	GTAC	4 cut(s)	110, 371, 406, 585
RsaNI	GTAC	4 cut(s)	109, 370, 405, 584
RseI	CAYNNNNRTG	2 cut(s)	719, 938
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	546, 1082
Sau3AI	GATC	2 cut(s)	909, 1038
Sau96I	GGNCC	1 cut(s)	237
ScaI	AGTACT	1 cut(s)	371
SchI	GAGTC	2 cut(s)	210, 245
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	128, 796
SfaNI	GCATC	5 cut(s)	28, 609, 623, 1003, 1165
SfcI	CTRYAG	2 cut(s)	16, 980
Sfr274I	CTCGAG	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	719, 938
SmlI	CTYRAG	4 cut(s)	257, 281, 413, 425
SmoI	CTYRAG	4 cut(s)	257, 281, 413, 425
Sse9I	AATT	5 cut(s)	453, 629, 953, 1057, 1149
SspMI	CTAG	2 cut(s)	195, 359
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	383, 1132
TaqI	TCGA	7 cut(s)	87, 150, 315, 414, 501, 617, 963
TasI	AATT	5 cut(s)	453, 629, 953, 1057, 1149
TatI	WGTACW	4 cut(s)	108, 369, 404, 583
TauI	GCSGC	4 cut(s)	58, 61, 64, 849
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	546, 1082
Tru9I	TTAA	2 cut(s)	546, 1082
TscAI	CASTG	8 cut(s)	75, 226, 274, 310, 441, 678, 801, 1137
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	8 cut(s)	64, 137, 461, 551, 749, 752, 761, 979
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	8 cut(s)	75, 226, 274, 310, 441, 678, 801, 1137
Van91I	CCANNNNNTGG	2 cut(s)	298, 394
VneI	GTGCAC	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	2 cut(s)	953, 1057
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	2 cut(s)	195, 359
ZrmI	AGTACT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.