UPF0496 protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G18630 AT2G18630 |
| fragaria_vesca | FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 |
| malus_domestica | MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1 |
| prunus_persica | Prupe.7G148500_v2.0.a1 |
| pyrus_communis | pycom02g15720 |
| rosa_chinensis | RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741 |
| rosa_laevigata | RLG00000017176 |
| rosa_multiflora | Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040 |
| rosa_roxburghii | Rroxscaffold_2G00140350 Rroxscaffold_2G00140360 |
| rosa_rugosa | Rorug02G0109300 Rorug02G0109300 |
| rosa_samantha | Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900 |
| rosa_wichuraiana | Rw2G012220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1581 |
| AarI | CACCTGC | 1 cut(s) | 1757 |
| Acc36I | ACCTGC | 3 cut(s) | 471, 1757, 1864 |
| AccB1I | GGYRCC | 1 cut(s) | 814 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1276, 1372 |
| AccII | CGCG | 1 cut(s) | 1098 |
| AciI | CCGC | 5 cut(s) | 347, 1745, 1758, 1825, 2082 |
| AclWI | GGATC | 1 cut(s) | 176 |
| AcoI | YGGCCR | 2 cut(s) | 45, 2083 |
| AcsI | RAATTY | 3 cut(s) | 289, 1431, 1931 |
| AcuI | CTGAAG | 2 cut(s) | 518, 957 |
| AfaI | GTAC | 7 cut(s) | 273, 354, 494, 500, 1349, 1384, 1563 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 982, 1225, 1276, 1372, 1546 |
| AflIII | ACRYGT | 1 cut(s) | 1096 |
| AjnI | CCWGG | 2 cut(s) | 309, 1269 |
| AleI | CACNNNNGTG | 1 cut(s) | 1697 |
| Alw21I | GWGCWC | 2 cut(s) | 447, 1774 |
| Alw26I | GTCTC | 3 cut(s) | 884, 1367, 1406 |
| Alw44I | GTGCAC | 1 cut(s) | 1770 |
| AlwI | GGATC | 1 cut(s) | 176 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 541, 1019 |
| Ama87I | CYCGRG | 1 cut(s) | 1391 |
| AoxI | GGCC | 3 cut(s) | 45, 585, 2083 |
| ApaLI | GTGCAC | 1 cut(s) | 1770 |
| ApoI | RAATTY | 3 cut(s) | 289, 1431, 1931 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 883, 915, 2098, 2130 |
| AseI | ATTAAT | 1 cut(s) | 714 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 531, 1059 |
| AspLEI | GCGC | 3 cut(s) | 646, 671, 1170 |
| AspS9I | GGNCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| AsuC2I | CCSGG | 1 cut(s) | 1534 |
| AsuHPI | GGTGA | 1 cut(s) | 846 |
| AsuII | TTCGAA | 1 cut(s) | 1479 |
| AvaI | CYCGRG | 1 cut(s) | 1391 |
| AvaII | GGWCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| BaeGI | GKGCMC | 1 cut(s) | 1774 |
| BalI | TGGCCA | 1 cut(s) | 47 |
| BanI | GGYRCC | 1 cut(s) | 814 |
| BanII | GRGCYC | 2 cut(s) | 447, 1840 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1044, 1076, 1873, 1905 |
| BbsI | GAAGAC | 1 cut(s) | 1174 |
| Bbv12I | GWGCWC | 2 cut(s) | 447, 1774 |
| BccI | CCATC | 4 cut(s) | 828, 859, 2057, 2147 |
| BciT130I | CCWGG | 2 cut(s) | 311, 1271 |
| BcnI | CCSGG | 1 cut(s) | 1534 |
| BcoDI | GTCTC | 3 cut(s) | 884, 1367, 1406 |
| BfaI | CTAG | 2 cut(s) | 1173, 1337 |
| BfmI | CTRYAG | 4 cut(s) | 672, 747, 1011, 1958 |
| BfoI | RGCGCY | 1 cut(s) | 672 |
| BfuAI | ACCTGC | 3 cut(s) | 471, 1757, 1864 |
| BmcAI | AGTACT | 1 cut(s) | 1349 |
| Bme1390I | CCNGG | 3 cut(s) | 311, 1271, 1534 |
| Bme18I | GGWCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| BmeT110I | CYCGRG | 1 cut(s) | 1391 |
| BmgT120I | GGNCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| BmiI | GGNNCC | 6 cut(s) | 11, 816, 1217, 1538, 1539, 1823 |
| BmrFI | CCNGG | 3 cut(s) | 311, 1271, 1534 |
| BmsI | GCATC | 4 cut(s) | 124, 1601, 1981, 2143 |
| BpiI | GAAGAC | 1 cut(s) | 1174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1316, 1348 |
| BpmI | CTGGAG | 3 cut(s) | 1221, 1349, 1586 |
| Bpu10I | CCTNAGC | 1 cut(s) | 222 |
| Bpu14I | TTCGAA | 1 cut(s) | 1479 |
| BpuEI | CTTGAG | 2 cut(s) | 1280, 1388 |
| BpuMI | CCSGG | 1 cut(s) | 1534 |
| BsaBI | GATNNNNATC | 2 cut(s) | 528, 2015 |
| BsaJI | CCNNGG | 4 cut(s) | 462, 588, 1533, 1761 |
| BsaWI | WCCGGW | 1 cut(s) | 197 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1194, 1224 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 982, 1225, 1276, 1372, 1546 |
| Bse1I | ACTGG | 2 cut(s) | 1204, 1779 |
| Bse3DI | GCAATG | 4 cut(s) | 1502, 1734, 1952, 2109 |
| Bse8I | GATNNNNATC | 2 cut(s) | 528, 2015 |
| BseBI | CCWGG | 2 cut(s) | 311, 1271 |
| BseDI | CCNNGG | 4 cut(s) | 462, 588, 1533, 1761 |
| BseGI | GGATG | 4 cut(s) | 712, 1312, 1996, 2134 |
| BseJI | GATNNNNATC | 2 cut(s) | 528, 2015 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 982, 1225, 1276, 1372, 1546 |
| BseMI | GCAATG | 4 cut(s) | 1502, 1734, 1952, 2109 |
| BseMII | CTCAG | 1 cut(s) | 236 |
| BseNI | ACTGG | 2 cut(s) | 1204, 1779 |
| BseRI | GAGGAG | 2 cut(s) | 1358, 1565 |
| BseSI | GKGCMC | 1 cut(s) | 1774 |
| BseX3I | CGGCCG | 1 cut(s) | 2083 |
| BsgI | GTGCAG | 2 cut(s) | 1431, 1725 |
| Bsh1236I | CGCG | 1 cut(s) | 1098 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2086 |
| BshFI | GGCC | 3 cut(s) | 47, 587, 2085 |
| BshNI | GGYRCC | 1 cut(s) | 814 |
| BsiEI | CGRYCG | 1 cut(s) | 2086 |
| BsiHKAI | GWGCWC | 2 cut(s) | 447, 1774 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1391 |
| BsiSI | CCGG | 3 cut(s) | 198, 1533, 2086 |
| BslFI | GGGAC | 4 cut(s) | 955, 959, 1201, 1550 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 982, 1225, 1276, 1372, 1546 |
| BsmAI | GTCTC | 3 cut(s) | 884, 1367, 1406 |
| BsmFI | GGGAC | 4 cut(s) | 955, 959, 1201, 1550 |
| BsmI | GAATGC | 3 cut(s) | 882, 1301, 1969 |
| BsnI | GGCC | 3 cut(s) | 47, 587, 2085 |
| BsoBI | CYCGRG | 1 cut(s) | 1391 |
| Bsp119I | TTCGAA | 1 cut(s) | 1479 |
| Bsp1286I | GDGCHC | 3 cut(s) | 447, 1774, 1840 |
| Bsp1407I | TGTACA | 1 cut(s) | 271 |
| Bsp143I | GATC | 2 cut(s) | 168, 2016 |
| BspACI | CCGC | 5 cut(s) | 347, 1745, 1758, 1825, 2082 |
| BspANI | GGCC | 3 cut(s) | 47, 587, 2085 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspFNI | CGCG | 1 cut(s) | 1098 |
| BspLI | GGNNCC | 6 cut(s) | 11, 816, 1217, 1538, 1539, 1823 |
| BspMAI | CTGCAG | 2 cut(s) | 676, 1962 |
| BspMI | ACCTGC | 3 cut(s) | 471, 1757, 1864 |
| BspPI | GGATC | 1 cut(s) | 176 |
| BspT104I | TTCGAA | 1 cut(s) | 1479 |
| BspT107I | GGYRCC | 1 cut(s) | 814 |
| BsrDI | GCAATG | 4 cut(s) | 1502, 1734, 1952, 2109 |
| BsrGI | TGTACA | 1 cut(s) | 271 |
| BsrI | ACTGG | 2 cut(s) | 1204, 1779 |
| BssECI | CCNNGG | 4 cut(s) | 462, 588, 1533, 1761 |
| BssMI | GATC | 2 cut(s) | 168, 2016 |
| BssT1I | CCWWGG | 3 cut(s) | 462, 588, 1761 |
| Bst2UI | CCWGG | 2 cut(s) | 311, 1271 |
| Bst4CI | ACNGT | 4 cut(s) | 99, 1015, 1361, 2110 |
| Bst6I | CTCTTC | 2 cut(s) | 196, 1980 |
| BstAUI | TGTACA | 1 cut(s) | 271 |
| BstBI | TTCGAA | 1 cut(s) | 1479 |
| BstC8I | GCNNGC | 2 cut(s) | 1044, 1410 |
| BstDEI | CTNAG | 5 cut(s) | 110, 222, 607, 693, 1112 |
| BstF5I | GGATG | 4 cut(s) | 712, 1312, 1996, 2134 |
| BstFNI | CGCG | 1 cut(s) | 1098 |
| BstH2I | RGCGCY | 1 cut(s) | 672 |
| BstHHI | GCGC | 3 cut(s) | 646, 671, 1170 |
| BstKTI | GATC | 2 cut(s) | 171, 2019 |
| BstMAI | GTCTC | 3 cut(s) | 884, 1367, 1406 |
| BstMBI | GATC | 2 cut(s) | 168, 2016 |
| BstMCI | CGRYCG | 1 cut(s) | 2086 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 218, 1526, 1736, 1739, 1973 |
| BstNI | CCWGG | 2 cut(s) | 311, 1271 |
| BstSCI | CCNGG | 3 cut(s) | 309, 1269, 1532 |
| BstSFI | CTRYAG | 4 cut(s) | 672, 747, 1011, 1958 |
| BstSLI | GKGCMC | 1 cut(s) | 1774 |
| BstUI | CGCG | 1 cut(s) | 1098 |
| BstV2I | GAAGAC | 1 cut(s) | 1174 |
| BstZI | CGGCCG | 1 cut(s) | 2083 |
| BsuRI | GGCC | 3 cut(s) | 47, 587, 2085 |
| BtsCI | GGATG | 4 cut(s) | 712, 1312, 1996, 2134 |
| BtsI | GCAGTG | 1 cut(s) | 1419 |
| BtsIMutI | CAGTG | 7 cut(s) | 1197, 1245, 1288, 1419, 1656, 1772, 2115 |
| BveI | ACCTGC | 3 cut(s) | 471, 1757, 1864 |
| Cac8I | GCNNGC | 2 cut(s) | 1044, 1410 |
| CaiI | CAGNNNCTG | 2 cut(s) | 541, 1019 |
| CfoI | GCGC | 3 cut(s) | 646, 671, 1170 |
| Cfr13I | GGNCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| CseI | GACGC | 2 cut(s) | 180, 1035 |
| Csp6I | GTAC | 7 cut(s) | 272, 353, 493, 499, 1348, 1383, 1562 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 894, 929 |
| CviAII | CATG | 1 cut(s) | 502 |
| CviQI | GTAC | 7 cut(s) | 272, 353, 493, 499, 1348, 1383, 1562 |
| DdeI | CTNAG | 5 cut(s) | 110, 222, 607, 693, 1112 |
| DpnI | GATC | 2 cut(s) | 170, 2018 |
| DpnII | GATC | 2 cut(s) | 168, 2016 |
| DraI | TTTAAA | 1 cut(s) | 301 |
| EaeI | YGGCCR | 2 cut(s) | 45, 2083 |
| EagI | CGGCCG | 1 cut(s) | 2083 |
| Eam1104I | CTCTTC | 2 cut(s) | 196, 1980 |
| EarI | CTCTTC | 2 cut(s) | 196, 1980 |
| Ecl136II | GAGCTC | 1 cut(s) | 445 |
| EclXI | CGGCCG | 1 cut(s) | 2083 |
| Eco130I | CCWWGG | 3 cut(s) | 462, 588, 1761 |
| Eco147I | AGGCCT | 1 cut(s) | 587 |
| Eco24I | GRGCYC | 2 cut(s) | 447, 1840 |
| Eco47I | GGWCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| Eco52I | CGGCCG | 1 cut(s) | 2083 |
| Eco53kI | GAGCTC | 1 cut(s) | 445 |
| Eco57I | CTGAAG | 2 cut(s) | 518, 957 |
| Eco88I | CYCGRG | 1 cut(s) | 1391 |
| EcoICRI | GAGCTC | 1 cut(s) | 445 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1116, 1215, 1537 |
| EcoRI | GAATTC | 1 cut(s) | 289 |
| EcoRII | CCWGG | 2 cut(s) | 309, 1269 |
| EcoT14I | CCWWGG | 3 cut(s) | 462, 588, 1761 |
| EcoT22I | ATGCAT | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 2 cut(s) | 447, 1840 |
| ErhI | CCWWGG | 3 cut(s) | 462, 588, 1761 |
| FaeI | CATG | 1 cut(s) | 505 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 572, 604, 1095, 1127 |
| FaqI | GGGAC | 4 cut(s) | 955, 959, 1201, 1550 |
| FatI | CATG | 1 cut(s) | 501 |
| FokI | GGATG | 4 cut(s) | 719, 1319, 2003, 2121 |
| FriOI | GRGCYC | 2 cut(s) | 447, 1840 |
| FspBI | CTAG | 2 cut(s) | 1173, 1337 |
| GlaI | GCGC | 3 cut(s) | 645, 670, 1169 |
| GsuI | CTGGAG | 3 cut(s) | 1221, 1349, 1586 |
| HaeII | RGCGCY | 1 cut(s) | 672 |
| HaeIII | GGCC | 3 cut(s) | 47, 587, 2085 |
| HapII | CCGG | 3 cut(s) | 198, 1533, 2086 |
| HgaI | GACGC | 2 cut(s) | 180, 1035 |
| HhaI | GCGC | 3 cut(s) | 646, 671, 1170 |
| Hin1II | CATG | 1 cut(s) | 505 |
| Hin6I | GCGC | 3 cut(s) | 644, 669, 1168 |
| HinP1I | GCGC | 3 cut(s) | 644, 669, 1168 |
| HincII | GTYRAC | 1 cut(s) | 195 |
| HindII | GTYRAC | 1 cut(s) | 195 |
| HindIII | AAGCTT | 2 cut(s) | 1628, 1656 |
| HinfI | GANTC | 9 cut(s) | 106, 306, 743, 752, 899, 924, 1130, 1179, 1229 |
| HpaII | CCGG | 3 cut(s) | 198, 1533, 2086 |
| HphI | GGTGA | 1 cut(s) | 846 |
| Hpy166II | GTNNAC | 6 cut(s) | 195, 327, 451, 1139, 1417, 1772 |
| Hpy188I | TCNGA | 4 cut(s) | 537, 1065, 1619, 1842 |
| Hpy188III | TCNNGA | 8 cut(s) | 887, 1103, 1292, 1322, 1366, 1393, 1603, 1942 |
| Hpy8I | GTNNAC | 6 cut(s) | 195, 327, 451, 1139, 1417, 1772 |
| Hpy99I | CGWCG | 1 cut(s) | 29 |
| HpyCH4III | ACNGT | 4 cut(s) | 99, 1015, 1361, 2110 |
| HpyCH4IV | ACGT | 3 cut(s) | 27, 370, 912 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 218, 1526, 1736, 1739, 1973 |
| HpyF3I | CTNAG | 5 cut(s) | 110, 222, 607, 693, 1112 |
| HpySE526I | ACGT | 3 cut(s) | 27, 370, 912 |
| Hsp92II | CATG | 1 cut(s) | 505 |
| HspAI | GCGC | 3 cut(s) | 644, 669, 1168 |
| KflI | GGGWCCC | 1 cut(s) | 1537 |
| Kzo9I | GATC | 2 cut(s) | 168, 2016 |
| LmnI | GCTCC | 5 cut(s) | 209, 220, 477, 1605, 1821 |
| LweI | GCATC | 4 cut(s) | 124, 1601, 1981, 2143 |
| MaeI | CTAG | 2 cut(s) | 1173, 1337 |
| MaeII | ACGT | 3 cut(s) | 27, 370, 912 |
| MaeIII | GTNAC | 5 cut(s) | 371, 602, 785, 1243, 1753 |
| MalI | GATC | 2 cut(s) | 170, 2018 |
| MboI | GATC | 2 cut(s) | 168, 2016 |
| MboII | GAAGA | 9 cut(s) | 213, 326, 422, 524, 1088, 1174, 1472, 1997, 2011 |
| MfeI | CAATTG | 1 cut(s) | 686 |
| MhlI | GDGCHC | 3 cut(s) | 447, 1774, 1840 |
| MlsI | TGGCCA | 1 cut(s) | 47 |
| MluI | ACGCGT | 1 cut(s) | 1096 |
| MluNI | TGGCCA | 1 cut(s) | 47 |
| MlyI | GAGTC | 5 cut(s) | 300, 752, 933, 1188, 1223 |
| MmeI | TCCRAC | 3 cut(s) | 1186, 1777, 1858 |
| Mox20I | TGGCCA | 1 cut(s) | 47 |
| Mph1103I | ATGCAT | 1 cut(s) | 139 |
| MroXI | GAANNNNTTC | 2 cut(s) | 531, 1059 |
| MscI | TGGCCA | 1 cut(s) | 47 |
| MseI | TTAA | 9 cut(s) | 285, 300, 321, 341, 714, 843, 1524, 1680, 2060 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1697, 1916 |
| Msp20I | TGGCCA | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 4 cut(s) | 349, 677, 1426, 1730 |
| MspI | CCGG | 3 cut(s) | 198, 1533, 2086 |
| MspR9I | CCNGG | 3 cut(s) | 311, 1271, 1534 |
| MunI | CAATTG | 1 cut(s) | 686 |
| Mva1269I | GAATGC | 3 cut(s) | 882, 1301, 1969 |
| MvaI | CCWGG | 2 cut(s) | 311, 1271 |
| MvnI | CGCG | 1 cut(s) | 1098 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 218, 1526, 1736, 1739, 1973 |
| NciI | CCSGG | 1 cut(s) | 1534 |
| NdeII | GATC | 2 cut(s) | 168, 2016 |
| NlaIII | CATG | 1 cut(s) | 505 |
| NlaIV | GGNNCC | 6 cut(s) | 11, 816, 1217, 1538, 1539, 1823 |
| NmeAIII | GCCGAG | 1 cut(s) | 1202 |
| NmuCI | GTSAC | 2 cut(s) | 785, 1243 |
| NsiI | ATGCAT | 1 cut(s) | 139 |
| NspV | TTCGAA | 1 cut(s) | 1479 |
| OliI | CACNNNNGTG | 1 cut(s) | 1697 |
| PaeR7I | CTCGAG | 1 cut(s) | 1391 |
| PaqCI | CACCTGC | 1 cut(s) | 1757 |
| PceI | AGGCCT | 1 cut(s) | 587 |
| PctI | GAATGC | 3 cut(s) | 882, 1301, 1969 |
| PdmI | GAANNNNTTC | 2 cut(s) | 531, 1059 |
| PfeI | GAWTC | 4 cut(s) | 106, 752, 899, 1130 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1276, 1372 |
| PfoI | TCCNGGA | 1 cut(s) | 309 |
| PleI | GAGTC | 5 cut(s) | 300, 751, 932, 1187, 1223 |
| PpsI | GAGTC | 5 cut(s) | 300, 751, 932, 1187, 1223 |
| PpuMI | RGGWCCY | 3 cut(s) | 1116, 1215, 1537 |
| PshBI | ATTAAT | 1 cut(s) | 714 |
| PsiI | TTATAA | 1 cut(s) | 1581 |
| Psp124BI | GAGCTC | 1 cut(s) | 447 |
| Psp5II | RGGWCCY | 3 cut(s) | 1116, 1215, 1537 |
| Psp6I | CCWGG | 2 cut(s) | 309, 1269 |
| PspGI | CCWGG | 2 cut(s) | 309, 1269 |
| PspN4I | GGNNCC | 6 cut(s) | 11, 816, 1217, 1538, 1539, 1823 |
| PspPI | GGNCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| PspPPI | RGGWCCY | 3 cut(s) | 1116, 1215, 1537 |
| PstI | CTGCAG | 2 cut(s) | 676, 1962 |
| PstNI | CAGNNNCTG | 2 cut(s) | 541, 1019 |
| PvuII | CAGCTG | 3 cut(s) | 677, 1426, 1730 |
| RsaI | GTAC | 7 cut(s) | 273, 354, 494, 500, 1349, 1384, 1563 |
| RsaNI | GTAC | 7 cut(s) | 272, 353, 493, 499, 1348, 1383, 1562 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1697, 1916 |
| SacI | GAGCTC | 1 cut(s) | 447 |
| SaqAI | TTAA | 9 cut(s) | 285, 300, 321, 341, 714, 843, 1524, 1680, 2060 |
| Sau3AI | GATC | 2 cut(s) | 168, 2016 |
| Sau96I | GGNCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| ScaI | AGTACT | 1 cut(s) | 1349 |
| SchI | GAGTC | 5 cut(s) | 300, 752, 933, 1188, 1223 |
| ScrFI | CCNGG | 3 cut(s) | 311, 1271, 1534 |
| SduI | GDGCHC | 3 cut(s) | 447, 1774, 1840 |
| SfaNI | GCATC | 4 cut(s) | 124, 1601, 1981, 2143 |
| SfcI | CTRYAG | 4 cut(s) | 672, 747, 1011, 1958 |
| Sfr274I | CTCGAG | 1 cut(s) | 1391 |
| SfuI | TTCGAA | 1 cut(s) | 1479 |
| SinI | GGWCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| SlaI | CTCGAG | 1 cut(s) | 1391 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1697, 1916 |
| SmlI | CTYRAG | 3 cut(s) | 1259, 1391, 1403 |
| SmoI | CTYRAG | 3 cut(s) | 1259, 1391, 1403 |
| SseBI | AGGCCT | 1 cut(s) | 587 |
| SsiI | CCGC | 5 cut(s) | 347, 1745, 1758, 1825, 2082 |
| SspMI | CTAG | 2 cut(s) | 1173, 1337 |
| SstI | GAGCTC | 1 cut(s) | 447 |
| StuI | AGGCCT | 1 cut(s) | 587 |
| StyD4I | CCNGG | 3 cut(s) | 309, 1269, 1532 |
| StyI | CCWWGG | 3 cut(s) | 462, 588, 1761 |
| TaaI | ACNGT | 4 cut(s) | 99, 1015, 1361, 2110 |
| TaiI | ACGT | 3 cut(s) | 30, 373, 915 |
| TaqI | TCGA | 9 cut(s) | 171, 823, 927, 1128, 1293, 1392, 1479, 1941, 2052 |
| TatI | WGTACW | 6 cut(s) | 271, 492, 498, 1347, 1382, 1561 |
| TauI | GCSGC | 2 cut(s) | 1827, 2085 |
| TfiI | GAWTC | 4 cut(s) | 106, 752, 899, 1130 |
| Tru1I | TTAA | 9 cut(s) | 285, 300, 321, 341, 714, 843, 1524, 1680, 2060 |
| Tru9I | TTAA | 9 cut(s) | 285, 300, 321, 341, 714, 843, 1524, 1680, 2060 |
| TscAI | CASTG | 7 cut(s) | 1204, 1252, 1288, 1419, 1656, 1779, 2115 |
| TseFI | GTSAC | 2 cut(s) | 785, 1243 |
| Tsp45I | GTSAC | 2 cut(s) | 785, 1243 |
| TspDTI | ATGAA | 6 cut(s) | 17, 96, 406, 540, 795, 1280 |
| TspGWI | ACGGA | 1 cut(s) | 1562 |
| TspRI | CASTG | 7 cut(s) | 1204, 1252, 1288, 1419, 1656, 1779, 2115 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1276, 1372 |
| VneI | GTGCAC | 1 cut(s) | 1770 |
| VpaK11BI | GGWCC | 4 cut(s) | 9, 1116, 1215, 1537 |
| VspI | ATTAAT | 1 cut(s) | 714 |
| XapI | RAATTY | 3 cut(s) | 289, 1431, 1931 |
| XhoI | CTCGAG | 1 cut(s) | 1391 |
| XmnI | GAANNNNTTC | 2 cut(s) | 531, 1059 |
| XspI | CTAG | 2 cut(s) | 1173, 1337 |
| ZrmI | AGTACT | 1 cut(s) | 1349 |
| Zsp2I | ATGCAT | 1 cut(s) | 139 |