Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006537.1

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Reverse (-)

159122 .. 160006

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006537.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgaaccaggaagtggtcagtgtcattctcgaatgcaagaaggatgtatggaacaatcaagagatgttctctctagtggaggagtactttgagaacagtctccagacattggacttctgtactgccctcgagagatgtctcaagcgtgcagtgaacaatcagctgataattcaggctgcggtgaggcagtttgaggaagaagtagaagctggtttcgaagggaaggggtgtgtgaggacattgcaggagttgagggcatttaaggcagccagggaccctttcacggaggagttctttgtactatttcaggcagtttataaccaacaggcatcgatgctccagaaattgcaagtccgaaagagaaagcttgataagaagttgaaatcagtgaaagcctggcggaaagtgtcaaatgttatttttgttgccacttttgtgtctgtattgatattttcggtggtggcagctgccattgctgcaccgccacttgtaaccgccttggctggtgcactggctgttccgataggttctgttggaaaatggtgtaatatgctttggagccgctatgagagggctctgaaagggcagagggagataataagctcaatgcaggttggaagtatgattacaatgacagacttgaacaacatcagggtgcttgttgagaaatttgaaatcgagattgaggcactgcttcagaatgctgactttgctattagagaagaggatgctgtgaagatcgtgatgattgagatcaacaaaaagctggaaaagtttatggaaaccatcgaaagtttaagccaaaacgctgataagtgtggccggaatataaggaaggcaaggacagtgattttgcagagaataattaggcatcccatcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

294

Amino Acids

33.6

Weight (kDa)

9.07

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	601
AccB7I	CCANNNNNTGG	2 cut(s)	13, 109
AciI	CCGC	5 cut(s)	179, 400, 482, 495, 562
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	86, 121, 300
AfiI	CCNNNNNNNGG	3 cut(s)	13, 109, 283
AgsI	TTSAA	3 cut(s)	382, 643, 674
AjnI	CCWGG	3 cut(s)	6, 269, 395
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	6 cut(s)	163, 209, 367, 467, 603, 766
AluI	AGCT	6 cut(s)	163, 209, 367, 467, 603, 766
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	2 cut(s)	104, 143
Alw44I	GTGCAC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	820
ApaLI	GTGCAC	1 cut(s)	507
ApeKI	GCWGC	5 cut(s)	176, 266, 464, 467, 476
ApoI	RAATTY	1 cut(s)	668
ArsI	GACNNNNNNTTYG	2 cut(s)	835, 867
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	193
AsuII	TTCGAA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	610, 642
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	5 cut(s)	163, 278, 454, 463, 476
BccI	CCATC	2 cut(s)	794, 884
BciT130I	CCWGG	3 cut(s)	8, 271, 397
BcoDI	GTCTC	2 cut(s)	104, 143
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	6 cut(s)	177, 267, 465, 468, 477, 562
BlsI	GCNGC	6 cut(s)	178, 268, 466, 469, 478, 563
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	8, 271, 397
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	3 cut(s)	275, 276, 560
BmrFI	CCNGG	3 cut(s)	8, 271, 397
BmsI	GCATC	4 cut(s)	324, 338, 718, 880
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	2 cut(s)	86, 323
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	270, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 109, 283
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	2 cut(s)	239, 471
Bse8I	GATNNNNATC	1 cut(s)	752
BseBI	CCWGG	3 cut(s)	8, 271, 397
BseCI	ATCGAT	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	270, 498
BseGI	GGATG	3 cut(s)	49, 733, 871
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	3 cut(s)	13, 109, 283
BseMI	GCAATG	2 cut(s)	239, 471
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	95, 302
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	5 cut(s)	163, 278, 454, 463, 476
BsgI	GTGCAG	2 cut(s)	168, 462
BshFI	GGCC	1 cut(s)	822
BshVI	ATCGAT	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	823
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	13, 109, 283
BsmAI	GTCTC	2 cut(s)	104, 143
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	2 cut(s)	38, 706
BsnI	GGCC	1 cut(s)	822
BsoBI	CYCGRG	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	511, 577
Bsp143I	GATC	2 cut(s)	738, 753
BspACI	CCGC	5 cut(s)	179, 400, 482, 495, 562
BspANI	GGCC	1 cut(s)	822
BspDI	ATCGAT	1 cut(s)	332
BspLI	GGNNCC	3 cut(s)	275, 276, 560
BspMI	ACCTGC	1 cut(s)	601
BspT104I	TTCGAA	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	239, 471
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	270, 498
BssMI	GATC	2 cut(s)	738, 753
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	3 cut(s)	8, 271, 397
Bst4CI	ACNGT	2 cut(s)	98, 847
Bst6I	CTCTTC	1 cut(s)	717
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	49, 733, 871
BstKTI	GATC	2 cut(s)	741, 756
BstMAI	GTCTC	2 cut(s)	104, 143
BstMBI	GATC	2 cut(s)	738, 753
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 473, 476, 710
BstNI	CCWGG	3 cut(s)	8, 271, 397
BstSCI	CCNGG	3 cut(s)	6, 269, 395
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	5 cut(s)	163, 278, 454, 463, 476
Bsu15I	ATCGAT	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	822
BsuTUI	ATCGAT	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	49, 733, 871
BtsI	GCAGTG	2 cut(s)	156, 689
BtsIMutI	CAGTG	6 cut(s)	25, 156, 393, 509, 689, 852
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	85, 120, 299
CviQI	GTAC	3 cut(s)	85, 120, 299
DpnI	GATC	2 cut(s)	740, 755
DpnII	GATC	2 cut(s)	738, 753
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EciI	GGCGGA	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	6, 269, 395
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	498
FaiI	YATR	7 cut(s)	49, 318, 551, 567, 623, 779, 830
FaqI	GGGAC	1 cut(s)	287
Fnu4HI	GCNGC	6 cut(s)	177, 267, 465, 468, 477, 562
FokI	GGATG	3 cut(s)	56, 740, 858
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	6 cut(s)	177, 267, 465, 468, 477, 562
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	6 cut(s)	177, 267, 465, 468, 477, 562
GsuI	CTGGAG	2 cut(s)	86, 323
HaeIII	GGCC	1 cut(s)	822
HapII	CCGG	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	365
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	154, 509
Hpy188I	TCNGA	4 cut(s)	356, 522, 579, 699
Hpy188III	TCNNGA	7 cut(s)	29, 59, 103, 130, 340, 679, 742
Hpy8I	GTNNAC	2 cut(s)	154, 509
HpyAV	CCTTC	4 cut(s)	34, 212, 217, 829
HpyCH4III	ACNGT	2 cut(s)	98, 847
HpyCH4V	TGCA	8 cut(s)	36, 149, 244, 349, 479, 509, 610, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 473, 476, 710
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	738, 753
LmnI	GCTCC	2 cut(s)	342, 558
Lsp1109I	GCAGC	5 cut(s)	163, 278, 454, 463, 476
LweI	GCATC	4 cut(s)	324, 338, 718, 880
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	2 cut(s)	740, 755
MboI	GATC	2 cut(s)	738, 753
MboII	GAAGA	3 cut(s)	209, 734, 748
MhlI	GDGCHC	2 cut(s)	511, 577
MluCI	AATT	4 cut(s)	168, 344, 668, 864
MmeI	TCCRAC	2 cut(s)	514, 595
MseI	TTAA	2 cut(s)	261, 797
MslI	CAYNNNNRTG	2 cut(s)	434, 653
MspA1I	CMGCKG	2 cut(s)	163, 467
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	3 cut(s)	8, 271, 397
Mva1269I	GAATGC	2 cut(s)	38, 706
MvaI	CCWGG	3 cut(s)	8, 271, 397
MwoI	GCNNNNNNNGC	4 cut(s)	263, 473, 476, 710
NdeII	GATC	2 cut(s)	738, 753
NlaIV	GGNNCC	3 cut(s)	275, 276, 560
NspV	TTCGAA	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	128
PctI	GAATGC	2 cut(s)	38, 706
PflMI	CCANNNNNTGG	2 cut(s)	13, 109
PkrI	GCNGC	6 cut(s)	178, 268, 466, 469, 478, 563
PpuMI	RGGWCCY	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	3 cut(s)	6, 269, 395
PspGI	CCWGG	3 cut(s)	6, 269, 395
PspN4I	GGNNCC	3 cut(s)	275, 276, 560
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PvuII	CAGCTG	2 cut(s)	163, 467
RsaI	GTAC	3 cut(s)	86, 121, 300
RsaNI	GTAC	3 cut(s)	85, 120, 299
RseI	CAYNNNNRTG	2 cut(s)	434, 653
SaqAI	TTAA	2 cut(s)	261, 797
SatI	GCNGC	6 cut(s)	177, 267, 465, 468, 477, 562
Sau3AI	GATC	2 cut(s)	738, 753
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	8, 271, 397
SduI	GDGCHC	2 cut(s)	511, 577
SetI	ASST	8 cut(s)	165, 211, 369, 469, 529, 605, 615, 768
SfaNI	GCATC	4 cut(s)	324, 338, 718, 880
Sfr274I	CTCGAG	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	2 cut(s)	434, 653
SmlI	CTYRAG	2 cut(s)	128, 140
SmoI	CTYRAG	2 cut(s)	128, 140
Sse9I	AATT	4 cut(s)	168, 344, 668, 864
SsiI	CCGC	5 cut(s)	179, 400, 482, 495, 562
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	6, 269, 395
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	98, 847
TaqI	TCGA	6 cut(s)	30, 129, 216, 332, 678, 789
TasI	AATT	4 cut(s)	168, 344, 668, 864
TatI	WGTACW	3 cut(s)	84, 119, 298
TauI	GCSGC	1 cut(s)	564
Tru1I	TTAA	2 cut(s)	261, 797
Tru9I	TTAA	2 cut(s)	261, 797
TscAI	CASTG	6 cut(s)	25, 156, 393, 516, 696, 852
TseI	GCWGC	5 cut(s)	176, 266, 464, 467, 476
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	6 cut(s)	25, 156, 393, 516, 696, 852
Van91I	CCANNNNNTGG	2 cut(s)	13, 109
VneI	GTGCAC	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	668
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	1 cut(s)	74
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.