Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Forward (+)

14799385 .. 14800548

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGATGGGAGGAAACTGCAGTAAAAACAAAGGTGTTGATGCTCCACCACCACCCCCACCGCCGCCGCCACAACAACCCCTCGAAAGCAATACCAAATCCGAGTACACAGCCCATTTGAGCTCTTATGAGGCAGCCTGTAAGGTCGATTCGGGTTTACAATCGTTTGATGTATCTCTCCAACAGCGCACTAGCCGAGTCTTCAACTCACTTTCCACTGGAGTTGAAGTTAGGTCCCTATCTTTGGACTCACTCAAAGAGGTCACTGATTGTTTGCTTGAGATGAACCAGGAAGTGGTCAGTGTCATTCTCGAATGCAAGAAGGATGTATGGAACAATCAAGAGATGTTCTCTCTAGTGGAGGAGTACTTTGAGAACAGTCTCCAGACATTGGACTTCTGTACTGCCCTCGAGAGATGTCTCAAGCGTGCAGTGAACAATCAGCTGATAATTCAGGCTGCGGTGAGGCAGTTTGAGGAAGAAGTAGAAGCTGGTTTCGAAGGGAAGGGGTGTGTGAGGACATTGCAGGAGTTGAGGGCATTTAAGGCAGCCGGGGACCCTTTCACGGAGGAGTTCTTTGTACTATTTCAGGCAGTTTATAACCAACAGGCATCAATGCTCCAGAAATTGCAAGTCCGAAAGAGAAAGCTTGATAAGAAGTTGAAATCAGTGAAAGCTTGGCGGAAAGTGTCAAATGTTATTTTTGTTGCCACTTTTGTGTCTGTATTGATATTTTCGGTGGTGGCAGCTGCCATTGCTGCACCGCCACTTGTAACCGCCTTGGCAGGTGCACTGGCTGTTCCGATAGGTTCTGTTGGAAAATGGTGTAATATGCTTTGGAGCCGCTACGAGAGGGCTCTGAAAGGGCAGAGGGAGATAATAAGCTCAATGCAGGTTGGAAGTATGATTACAATGACAGACTTGAACAACATCAGGGTGCTTGTTGAGAAATTTGAAATCGAGATTGAGGCACTACTTCAGAATGCTGACTTGGCTATTAGAGAAGAGGATGCTGTGAAGATAGTGATGATTGAGATCAACAAAAAGCTGGAAAAGTTTATGGAAACCATCGAAAGTTTAAGCCAAAATGCTGATAAGTGTGGCCGGAATATAAGGAAGGCAAGGACAGTGATTTTGCAGAGAATAATTAGGCATCCCATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

387

Amino Acids

43.44

Weight (kDa)

8.28

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	52 - 381	2e-130	Protein of unknown function (DUF677)
ROH1-like	PF05633	52 - 160	6e-07	Protein ROH1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	2 cut(s)	773, 880
AccB7I	CCANNNNNTGG	2 cut(s)	292, 388
AciI	CCGC	8 cut(s)	59, 62, 65, 458, 679, 761, 774, 841
AcoI	YGGCCR	1 cut(s)	1099
AcsI	RAATTY	1 cut(s)	947
AcuI	CTGAAG	1 cut(s)	959
AfaI	GTAC	4 cut(s)	104, 365, 400, 579
AfiI	CCNNNNNNNGG	4 cut(s)	241, 292, 388, 562
AgsI	TTSAA	5 cut(s)	202, 224, 661, 922, 953
AjnI	CCWGG	1 cut(s)	285
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	8 cut(s)	120, 442, 488, 646, 674, 746, 882, 1045
AluI	AGCT	8 cut(s)	120, 442, 488, 646, 674, 746, 882, 1045
Alw21I	GWGCWC	2 cut(s)	122, 790
Alw26I	GTCTC	2 cut(s)	383, 422
Alw44I	GTGCAC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	1099
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	6 cut(s)	131, 455, 545, 743, 746, 755
ApoI	RAATTY	1 cut(s)	947
ArsI	GACNNNNNNTTYG	2 cut(s)	1114, 1146
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	231, 553
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	231, 553
BaeGI	GKGCMC	1 cut(s)	790
BanII	GRGCYC	2 cut(s)	122, 856
BarI	GAAGNNNNNNTAC	2 cut(s)	889, 921
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	122, 790
BbvI	GCAGC	6 cut(s)	143, 442, 557, 733, 742, 755
BccI	CCATC	2 cut(s)	1073, 1163
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	2 cut(s)	383, 422
BfaI	CTAG	2 cut(s)	189, 353
BfmI	CTRYAG	1 cut(s)	16
BfuAI	ACCTGC	2 cut(s)	773, 880
BisI	GCNGC	9 cut(s)	62, 65, 132, 456, 546, 744, 747, 756, 841
BlsI	GCNGC	9 cut(s)	63, 66, 133, 457, 547, 745, 748, 757, 842
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	287, 550
Bme18I	GGWCC	2 cut(s)	231, 553
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	231, 553
BmiI	GGNNCC	4 cut(s)	233, 554, 555, 839
BmrFI	CCNGG	2 cut(s)	287, 550
BmsI	GCATC	4 cut(s)	28, 617, 997, 1159
BpiI	GAAGAC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	3 cut(s)	237, 365, 602
Bpu14I	TTCGAA	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	296, 404
BpuMI	CCSGG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	549, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 292, 388, 562
Bse1I	ACTGG	2 cut(s)	220, 795
Bse3DI	GCAATG	2 cut(s)	518, 750
Bse8I	GATNNNNATC	1 cut(s)	1031
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	549, 777
BseGI	GGATG	3 cut(s)	328, 1012, 1150
BseJI	GATNNNNATC	1 cut(s)	1031
BseLI	CCNNNNNNNGG	4 cut(s)	241, 292, 388, 562
BseMI	GCAATG	2 cut(s)	518, 750
BseNI	ACTGG	2 cut(s)	220, 795
BseRI	GAGGAG	2 cut(s)	374, 581
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	6 cut(s)	143, 442, 557, 733, 742, 755
BsgI	GTGCAG	2 cut(s)	447, 741
BshFI	GGCC	1 cut(s)	1101
BsiHKAI	GWGCWC	2 cut(s)	122, 790
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	549, 1102
BslFI	GGGAC	2 cut(s)	217, 566
BslI	CCNNNNNNNGG	4 cut(s)	241, 292, 388, 562
BsmAI	GTCTC	2 cut(s)	383, 422
BsmFI	GGGAC	2 cut(s)	217, 566
BsmI	GAATGC	2 cut(s)	317, 985
BsnI	GGCC	1 cut(s)	1101
BsoBI	CYCGRG	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	122, 790, 856
Bsp143I	GATC	1 cut(s)	1032
BspACI	CCGC	8 cut(s)	59, 62, 65, 458, 679, 761, 774, 841
BspANI	GGCC	1 cut(s)	1101
BspLI	GGNNCC	4 cut(s)	233, 554, 555, 839
BspMAI	CTGCAG	1 cut(s)	20
BspMI	ACCTGC	2 cut(s)	773, 880
BspT104I	TTCGAA	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	518, 750
BsrI	ACTGG	2 cut(s)	220, 795
BssECI	CCNNGG	2 cut(s)	549, 777
BssMI	GATC	1 cut(s)	1032
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	377, 1126
Bst6I	CTCTTC	1 cut(s)	996
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	328, 1012, 1150
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	1035
BstMAI	GTCTC	2 cut(s)	383, 422
BstMBI	GATC	1 cut(s)	1032
BstMWI	GCNNNNNNNGC	4 cut(s)	542, 752, 755, 989
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	285, 548
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	6 cut(s)	143, 442, 557, 733, 742, 755
BstV2I	GAAGAC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	1101
BtsCI	GGATG	3 cut(s)	328, 1012, 1150
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	7 cut(s)	213, 261, 304, 435, 672, 788, 1131
BveI	ACCTGC	2 cut(s)	773, 880
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	231, 553
Csp6I	GTAC	4 cut(s)	103, 364, 399, 578
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviQI	GTAC	4 cut(s)	103, 364, 399, 578
DpnI	GATC	1 cut(s)	1034
DpnII	GATC	1 cut(s)	1032
EaeI	YGGCCR	1 cut(s)	1099
Eam1104I	CTCTTC	1 cut(s)	996
EarI	CTCTTC	1 cut(s)	996
EciI	GGCGGA	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	122, 856
Eco47I	GGWCC	2 cut(s)	231, 553
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	959
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	2 cut(s)	231, 553
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	2 cut(s)	122, 856
ErhI	CCWWGG	1 cut(s)	777
FaiI	YATR	7 cut(s)	126, 328, 597, 830, 902, 1058, 1109
FaqI	GGGAC	2 cut(s)	217, 566
Fnu4HI	GCNGC	9 cut(s)	62, 65, 132, 456, 546, 744, 747, 756, 841
FokI	GGATG	3 cut(s)	335, 1019, 1137
FriOI	GRGCYC	2 cut(s)	122, 856
Fsp4HI	GCNGC	9 cut(s)	62, 65, 132, 456, 546, 744, 747, 756, 841
FspBI	CTAG	2 cut(s)	189, 353
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	9 cut(s)	62, 65, 132, 456, 546, 744, 747, 756, 841
GsuI	CTGGAG	3 cut(s)	237, 365, 602
HaeIII	GGCC	1 cut(s)	1101
HapII	CCGG	2 cut(s)	549, 1102
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	2 cut(s)	644, 672
HinfI	GANTC	3 cut(s)	146, 195, 245
HpaII	CCGG	2 cut(s)	549, 1102
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	4 cut(s)	105, 155, 433, 788
Hpy188I	TCNGA	5 cut(s)	100, 635, 801, 858, 978
Hpy188III	TCNNGA	6 cut(s)	308, 338, 382, 409, 619, 958
Hpy8I	GTNNAC	4 cut(s)	105, 155, 433, 788
HpyAV	CCTTC	4 cut(s)	313, 491, 496, 1108
HpyCH4III	ACNGT	2 cut(s)	377, 1126
HpyCH4V	TGCA	9 cut(s)	18, 315, 428, 523, 628, 758, 788, 889, 1135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	542, 752, 755, 989
HspAI	GCGC	1 cut(s)	184
KflI	GGGWCCC	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	1032
LmnI	GCTCC	3 cut(s)	46, 621, 837
Lsp1109I	GCAGC	6 cut(s)	143, 442, 557, 733, 742, 755
LweI	GCATC	4 cut(s)	28, 617, 997, 1159
MaeI	CTAG	2 cut(s)	189, 353
MaeIII	GTNAC	2 cut(s)	259, 769
MalI	GATC	1 cut(s)	1034
MboI	GATC	1 cut(s)	1032
MboII	GAAGA	4 cut(s)	190, 488, 1013, 1027
MhlI	GDGCHC	3 cut(s)	122, 790, 856
MluCI	AATT	4 cut(s)	447, 623, 947, 1143
MlyI	GAGTC	2 cut(s)	204, 239
MmeI	TCCRAC	3 cut(s)	202, 793, 874
MseI	TTAA	2 cut(s)	540, 1076
MslI	CAYNNNNRTG	2 cut(s)	713, 932
MspA1I	CMGCKG	2 cut(s)	442, 746
MspI	CCGG	2 cut(s)	549, 1102
MspR9I	CCNGG	2 cut(s)	287, 550
Mva1269I	GAATGC	2 cut(s)	317, 985
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	542, 752, 755, 989
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	1 cut(s)	1032
NlaIV	GGNNCC	4 cut(s)	233, 554, 555, 839
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	495
OliI	CACNNNNGTG	1 cut(s)	713
PaeR7I	CTCGAG	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	2 cut(s)	317, 985
PfeI	GAWTC	1 cut(s)	146
PflMI	CCANNNNNTGG	2 cut(s)	292, 388
PkrI	GCNGC	9 cut(s)	63, 66, 133, 457, 547, 745, 748, 757, 842
PleI	GAGTC	2 cut(s)	203, 239
PpsI	GAGTC	2 cut(s)	203, 239
PpuMI	RGGWCCY	2 cut(s)	231, 553
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	2 cut(s)	231, 553
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	4 cut(s)	233, 554, 555, 839
PspPI	GGNCC	2 cut(s)	231, 553
PspPPI	RGGWCCY	2 cut(s)	231, 553
PstI	CTGCAG	1 cut(s)	20
PvuII	CAGCTG	2 cut(s)	442, 746
RsaI	GTAC	4 cut(s)	104, 365, 400, 579
RsaNI	GTAC	4 cut(s)	103, 364, 399, 578
RseI	CAYNNNNRTG	2 cut(s)	713, 932
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	540, 1076
SatI	GCNGC	9 cut(s)	62, 65, 132, 456, 546, 744, 747, 756, 841
Sau3AI	GATC	1 cut(s)	1032
Sau96I	GGNCC	2 cut(s)	231, 553
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	2 cut(s)	204, 239
ScrFI	CCNGG	2 cut(s)	287, 550
SduI	GDGCHC	3 cut(s)	122, 790, 856
SfaNI	GCATC	4 cut(s)	28, 617, 997, 1159
SfcI	CTRYAG	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	2 cut(s)	231, 553
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	713, 932
SmlI	CTYRAG	3 cut(s)	275, 407, 419
SmoI	CTYRAG	3 cut(s)	275, 407, 419
Sse9I	AATT	4 cut(s)	447, 623, 947, 1143
SsiI	CCGC	8 cut(s)	59, 62, 65, 458, 679, 761, 774, 841
SspMI	CTAG	2 cut(s)	189, 353
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	285, 548
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	377, 1126
TaqI	TCGA	7 cut(s)	81, 144, 309, 408, 495, 957, 1068
TasI	AATT	4 cut(s)	447, 623, 947, 1143
TatI	WGTACW	4 cut(s)	102, 363, 398, 577
TauI	GCSGC	3 cut(s)	64, 67, 843
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	540, 1076
Tru9I	TTAA	2 cut(s)	540, 1076
TscAI	CASTG	7 cut(s)	220, 268, 304, 435, 672, 795, 1131
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	6 cut(s)	131, 455, 545, 743, 746, 755
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	7 cut(s)	220, 268, 304, 435, 672, 795, 1131
Van91I	CCANNNNNTGG	2 cut(s)	292, 388
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	2 cut(s)	231, 553
XapI	RAATTY	1 cut(s)	947
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	2 cut(s)	189, 353
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.