Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Forward (+)

7782948 .. 7786031

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATGGGAGCAAACAGCAGTAAAAACAAAGGTGTTGATGCTCCAGCATCCCCACCTCCTCCGCTGCCACAACAACCCATCGAAAACAATACCAAATCGGAGTACACATCCCATTTGAGCTCTTATGAGGCAGCATGTAAGCTCGATTCGGGTTTACAATCGTTTGATGTATCTGTCCAACAGCGCACTAGCCGAGTGTTCAACTCACTTTCCACTGGAGTTGAAGTGAGGTCCCTATCATTGGACTCACTCAAAGAGGTCACTGATTGTTTGCTTGAGATGAACCACGAAGTAGTCAAAGTCATTCTCGAATGCAAGAAGGATATATGGAACAATCAAGAGATGTTCTCTCTAGTGGAGGAGTACTTTGAGAACAGTCTGCAGACATTGGACTTCTGCACTGCCCTCGAGAGATGTCTCAAGCGTGCAGTGAACAATCAGTTGATAATTCAGGCTGCGGTGAGGCGGTTTGAGGAAGAAGTAGAAGCTGGTTTCGACGGGAAGGGATGTGTGAGAACATTGCAGGAGTTGAGGGCATTTAAGGCAGCCGGGGACCCTTTCACGGAAGAGTTTTTTGTACTATTTCAGGCAGTGTATAACCAACAGGCATCAATGCTCCAGAAATTGCAAGTCCGAAAGAGAAAGCTTGATAAGAAGTTGAAATCAGTGAAAGCTTGGCGGAAAGTGTCAAATGTTATTTTTGTTGCCACTTTTGTGTCTGTATTGATATTTTCGGTGGTGGCAGCTGCCATTGCTGCACCGCCACTTGTAACCGCCTTGGCAGGTGCACTGGCTGTTCCGATAGGTTCTGTCGGGAAGTGGTGTAATATGCTTTGGAGCCGCTATGAGAGGGCTCTGAAAGGACAGAGGGAGATTATAAGCTCAATGCAGGTTGGAAGTATGATTACAATGACGGACTTGAACAACATCAGGGTGCTTGTTGGGAAATTGGAAATCGAGATTGAGGCACTGCTACAGAATGCTGACTTTGCTATTAGAGAAGAAGATGCTGTGAAGATAGTGATGATTGAGATCAACAAAAAGCTGGAAACTTTTATGGAAACCATCGAAAGTTTAAGCCAAAACGCTGATAAGTGTGGCCACAATATAAGGAAGGCAAGGACAGTGATTCTGCGGAGAATAATTAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

385

Amino Acids

43.04

Weight (kDa)

8.33

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	51 - 160	9e-07	Protein ROH1-like
DUF677	PF05055	52 - 381	1.6e-128	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	878
AarI	CACCTGC	1 cut(s)	773
Acc36I	ACCTGC	2 cut(s)	773, 880
AciI	CCGC	8 cut(s)	62, 458, 466, 679, 761, 774, 841, 1135
AcoI	YGGCCR	1 cut(s)	1099
AfaI	GTAC	3 cut(s)	104, 365, 579
AfiI	CCNNNNNNNGG	2 cut(s)	241, 562
AgsI	TTSAA	4 cut(s)	202, 224, 661, 922
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	8 cut(s)	120, 142, 488, 646, 674, 746, 882, 1045
AluI	AGCT	8 cut(s)	120, 142, 488, 646, 674, 746, 882, 1045
Alw21I	GWGCWC	2 cut(s)	122, 790
Alw26I	GTCTC	1 cut(s)	422
Alw44I	GTGCAC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	1099
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	7 cut(s)	64, 131, 455, 545, 743, 746, 755
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	231, 553
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	231, 553
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	1101
BanII	GRGCYC	2 cut(s)	122, 856
BarI	GAAGNNNNNNTAC	2 cut(s)	889, 921
Bbv12I	GWGCWC	2 cut(s)	122, 790
BbvI	GCAGC	7 cut(s)	51, 143, 442, 557, 733, 742, 755
BccI	CCATC	2 cut(s)	86, 1073
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	189, 353
BfmI	CTRYAG	2 cut(s)	380, 974
BfuAI	ACCTGC	2 cut(s)	773, 880
BisI	GCNGC	8 cut(s)	65, 132, 456, 546, 744, 747, 756, 841
BlsI	GCNGC	8 cut(s)	66, 133, 457, 547, 745, 748, 757, 842
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	2 cut(s)	231, 553
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	231, 553
BmiI	GGNNCC	4 cut(s)	233, 554, 555, 839
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	4 cut(s)	28, 56, 617, 997
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	3 cut(s)	27, 237, 602
BpuEI	CTTGAG	2 cut(s)	296, 404
BpuMI	CCSGG	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	1031
BsaJI	CCNNGG	2 cut(s)	549, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 562
Bse1I	ACTGG	2 cut(s)	220, 795
Bse3DI	GCAATG	2 cut(s)	518, 750
Bse8I	GATNNNNATC	1 cut(s)	1031
BseDI	CCNNGG	2 cut(s)	549, 777
BseGI	GGATG	3 cut(s)	47, 107, 512
BseJI	GATNNNNATC	1 cut(s)	1031
BseLI	CCNNNNNNNGG	2 cut(s)	241, 562
BseMI	GCAATG	2 cut(s)	518, 750
BseNI	ACTGG	2 cut(s)	220, 795
BseRI	GAGGAG	2 cut(s)	48, 374
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	7 cut(s)	51, 143, 442, 557, 733, 742, 755
BsgI	GTGCAG	3 cut(s)	382, 447, 741
BshFI	GGCC	1 cut(s)	1101
BsiHKAI	GWGCWC	2 cut(s)	122, 790
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	549
BslFI	GGGAC	2 cut(s)	217, 566
BslI	CCNNNNNNNGG	2 cut(s)	241, 562
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	2 cut(s)	217, 566
BsmI	GAATGC	2 cut(s)	317, 985
BsnI	GGCC	1 cut(s)	1101
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	3 cut(s)	122, 790, 856
Bsp143I	GATC	1 cut(s)	1032
BspACI	CCGC	8 cut(s)	62, 458, 466, 679, 761, 774, 841, 1135
BspANI	GGCC	1 cut(s)	1101
BspLI	GGNNCC	4 cut(s)	233, 554, 555, 839
BspMAI	CTGCAG	1 cut(s)	384
BspMI	ACCTGC	2 cut(s)	773, 880
BsrDI	GCAATG	2 cut(s)	518, 750
BsrI	ACTGG	2 cut(s)	220, 795
BssECI	CCNNGG	2 cut(s)	549, 777
BssMI	GATC	1 cut(s)	1032
BssT1I	CCWWGG	1 cut(s)	777
Bst4CI	ACNGT	2 cut(s)	377, 1126
Bst6I	CTCTTC	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	47, 107, 512
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	1 cut(s)	1035
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	1 cut(s)	1032
BstMWI	GCNNNNNNNGC	4 cut(s)	542, 752, 755, 989
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	548
BstSFI	CTRYAG	2 cut(s)	380, 974
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	7 cut(s)	51, 143, 442, 557, 733, 742, 755
BsuRI	GGCC	1 cut(s)	1101
BtsCI	GGATG	3 cut(s)	47, 107, 512
BtsI	GCAGTG	4 cut(s)	399, 435, 597, 968
BtsIMutI	CAGTG	9 cut(s)	213, 261, 399, 435, 597, 672, 788, 968, 1131
BveI	ACCTGC	2 cut(s)	773, 880
Cac8I	GCNNGC	1 cut(s)	426
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	231, 553
Csp6I	GTAC	3 cut(s)	103, 364, 578
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	135
CviQI	GTAC	3 cut(s)	103, 364, 578
DpnI	GATC	1 cut(s)	1034
DpnII	GATC	1 cut(s)	1032
EaeI	YGGCCR	1 cut(s)	1099
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EciI	GGCGGA	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	777
Eco24I	GRGCYC	2 cut(s)	122, 856
Eco47I	GGWCC	2 cut(s)	231, 553
Eco53kI	GAGCTC	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	2 cut(s)	231, 553
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	2 cut(s)	122, 856
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	1 cut(s)	138
FaqI	GGGAC	2 cut(s)	217, 566
FatI	CATG	1 cut(s)	134
Fnu4HI	GCNGC	8 cut(s)	65, 132, 456, 546, 744, 747, 756, 841
FokI	GGATG	3 cut(s)	34, 94, 519
FriOI	GRGCYC	2 cut(s)	122, 856
Fsp4HI	GCNGC	8 cut(s)	65, 132, 456, 546, 744, 747, 756, 841
FspBI	CTAG	2 cut(s)	189, 353
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	8 cut(s)	65, 132, 456, 546, 744, 747, 756, 841
GsuI	CTGGAG	3 cut(s)	27, 237, 602
HaeIII	GGCC	1 cut(s)	1101
HapII	CCGG	1 cut(s)	549
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	2 cut(s)	644, 672
HinfI	GANTC	3 cut(s)	146, 245, 1129
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	4 cut(s)	105, 155, 433, 788
Hpy188I	TCNGA	4 cut(s)	100, 635, 801, 858
Hpy188III	TCNNGA	6 cut(s)	308, 338, 409, 619, 814, 958
Hpy8I	GTNNAC	4 cut(s)	105, 155, 433, 788
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	313, 496, 1108
HpyCH4III	ACNGT	2 cut(s)	377, 1126
HpyCH4V	TGCA	9 cut(s)	315, 382, 399, 428, 523, 628, 758, 788, 889
HpyF10VI	GCNNNNNNNGC	4 cut(s)	542, 752, 755, 989
Hsp92II	CATG	1 cut(s)	138
HspAI	GCGC	1 cut(s)	184
KflI	GGGWCCC	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	1032
LmnI	GCTCC	4 cut(s)	8, 46, 621, 837
Lsp1109I	GCAGC	7 cut(s)	51, 143, 442, 557, 733, 742, 755
LweI	GCATC	4 cut(s)	28, 56, 617, 997
MaeI	CTAG	2 cut(s)	189, 353
MaeIII	GTNAC	2 cut(s)	259, 769
MalI	GATC	1 cut(s)	1034
MboI	GATC	1 cut(s)	1032
MboII	GAAGA	5 cut(s)	488, 578, 1013, 1016, 1027
MhlI	GDGCHC	3 cut(s)	122, 790, 856
MlsI	TGGCCA	1 cut(s)	1101
MluCI	AATT	5 cut(s)	447, 623, 947, 1143, 1150
MluNI	TGGCCA	1 cut(s)	1101
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	202, 874
Mox20I	TGGCCA	1 cut(s)	1101
MscI	TGGCCA	1 cut(s)	1101
MseI	TTAA	3 cut(s)	540, 1076, 1146
MslI	CAYNNNNRTG	2 cut(s)	713, 932
Msp20I	TGGCCA	1 cut(s)	1101
MspA1I	CMGCKG	2 cut(s)	64, 746
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	1 cut(s)	550
Mva1269I	GAATGC	2 cut(s)	317, 985
MwoI	GCNNNNNNNGC	4 cut(s)	542, 752, 755, 989
NciI	CCSGG	1 cut(s)	550
NdeII	GATC	1 cut(s)	1032
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	4 cut(s)	233, 554, 555, 839
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	713
PaeR7I	CTCGAG	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	773
PctI	GAATGC	2 cut(s)	317, 985
PfeI	GAWTC	2 cut(s)	146, 1129
PkrI	GCNGC	8 cut(s)	66, 133, 457, 547, 745, 748, 757, 842
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	2 cut(s)	231, 553
PsiI	TTATAA	1 cut(s)	878
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	2 cut(s)	231, 553
PspN4I	GGNNCC	4 cut(s)	233, 554, 555, 839
PspPI	GGNCC	2 cut(s)	231, 553
PspPPI	RGGWCCY	2 cut(s)	231, 553
PstI	CTGCAG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	3 cut(s)	104, 365, 579
RsaNI	GTAC	3 cut(s)	103, 364, 578
RseI	CAYNNNNRTG	2 cut(s)	713, 932
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	540, 1076, 1146
SatI	GCNGC	8 cut(s)	65, 132, 456, 546, 744, 747, 756, 841
Sau3AI	GATC	1 cut(s)	1032
Sau96I	GGNCC	2 cut(s)	231, 553
ScaI	AGTACT	1 cut(s)	365
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	3 cut(s)	122, 790, 856
SfaNI	GCATC	4 cut(s)	28, 56, 617, 997
SfcI	CTRYAG	2 cut(s)	380, 974
Sfr274I	CTCGAG	1 cut(s)	407
SinI	GGWCC	2 cut(s)	231, 553
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	2 cut(s)	713, 932
SmlI	CTYRAG	3 cut(s)	275, 407, 419
SmoI	CTYRAG	3 cut(s)	275, 407, 419
Sse9I	AATT	5 cut(s)	447, 623, 947, 1143, 1150
SsiI	CCGC	8 cut(s)	62, 458, 466, 679, 761, 774, 841, 1135
SspMI	CTAG	2 cut(s)	189, 353
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	377, 1126
TaqI	TCGA	7 cut(s)	81, 144, 309, 408, 495, 957, 1068
TasI	AATT	5 cut(s)	447, 623, 947, 1143, 1150
TatI	WGTACW	3 cut(s)	102, 363, 577
TauI	GCSGC	1 cut(s)	843
TfiI	GAWTC	2 cut(s)	146, 1129
Tru1I	TTAA	3 cut(s)	540, 1076, 1146
Tru9I	TTAA	3 cut(s)	540, 1076, 1146
TscAI	CASTG	9 cut(s)	220, 268, 406, 435, 597, 672, 795, 975, 1131
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	7 cut(s)	64, 131, 455, 545, 743, 746, 755
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	2 cut(s)	578, 929
TspRI	CASTG	9 cut(s)	220, 268, 406, 435, 597, 672, 795, 975, 1131
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	2 cut(s)	231, 553
XceI	RCATGY	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	2 cut(s)	189, 353
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.