Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Forward (+)

23279292 .. 23282474

Gene Structure 3183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1269200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATGGGAGGAAAATTCAGTAAAAACAAGGGTGTTGATGCCTCAGGAACACTCTCACCACCACCCCCACAACCACATGAAACCCTTGAAAGCAATACCAATTCCCAGGACACTGCCGATTTGAGCTCCTACGAGGCAGCCTGTAAGCTCGATCCAGCCTTGCAATCGTTTGATGTCAATCTCCAGCAGCGGACAAGCCGTGTCATTCACTCGTTTTCAGATGGGCTGGAAGTTCGGTCCCTATCCCTTGACTCGCTCAAGGAGGTTACGGATTGTTTGCTCGACATGAACCAGGAAGTGGTCAAGTTGATTCTAGAATGCAAGAAGGATATATGGAAGAGTAAAGAAATGTTCTCTCTTGTAGAGGAATACTTTGAGAACAGTCTTCAAACATTGGACTTTTGTACTTCCCTCGAGCAGTGTCTTAAGCGTGCGCTCAATAACCAGCTGATAATTCAAGCTGCAGTTAGGCAGTTTGAGGAAGAAGTAGGGGCTGGGGCAGATGGGAATGGGTGTGCGAGAACCTTAAAAGAATTGAGGGCATTTAAGGCGGCTGGGGATCCTTTCACGGACGAGTTCTTTAGACTGTTTCAGACAGTTTATAAGAATCAGGCATCAATGTTTGAGAAACTGCAACTTCGTAAGAGAAAACTTGATAAGAAGTTGAAATCAGTGAAAGCTTGGAGGAGGGTGTCAAATGTTATTTTTGTTGCCACATTTGTCTCTGTATTGGTTTTCTCTGTAGTGGCAGCTGCCATTGCTGCACCACCACTTGTAACGGCCTTGGCAGGAGCGTTGGCTGTTCCAATAGGTTCAGTTGGAAAATGGTGTAATATGCTTTGGAATAACTACGAGAGGGGACTGAAAGGGCAGAGGGAGATAATCAGCTCAATGCAGATTGGAACGTTCGTTACATTGAAGGACCTGGACAGCATCCGAGTGCTTGTTGACAAATTTGAAATTGGGATTGAATCGCTGCTGCAAAATGCTGATTTTGCTATTAGAGAAGAGGGCGTAGCTGTGAAGCTAGTGATAGATGAGATCAAGAAAAAGCTTGATGTGTTCGTGGAAACCATTGATAATCTAAGCCAACATGCTGATAAGTGTAGCCGGAATATAAGGAAGGCAAGGACAGTGATTTTACAGAGAATAATTAGGCATCCCAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

391

Amino Acids

43.68

Weight (kDa)

8.31

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ROH1-like	PF05633	53 - 165	2.9e-06	Protein ROH1-like
DUF677	PF05055	54 - 384	1.1e-132	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	2 cut(s)	190, 551
AclI	AACGTT	1 cut(s)	905
AclWI	GGATC	3 cut(s)	146, 554, 567
AcsI	RAATTY	2 cut(s)	14, 953
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	7 cut(s)	89, 389, 458, 667, 919, 959, 971
AjnI	CCWGG	3 cut(s)	105, 291, 924
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	3 cut(s)	146, 554, 567
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	8 cut(s)	137, 187, 461, 749, 752, 761, 976, 979
ApoI	RAATTY	2 cut(s)	14, 953
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	237, 922
AsuHPI	GGTGA	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	2 cut(s)	237, 922
AxyI	CCTNAGG	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	8 cut(s)	149, 199, 448, 739, 748, 761, 963, 966
BccI	CCATC	2 cut(s)	215, 497
BceAI	ACGGC	2 cut(s)	183, 795
BciT130I	CCWGG	3 cut(s)	107, 293, 926
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	2 cut(s)	314, 1028
BfmI	CTRYAG	2 cut(s)	462, 741
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	9 cut(s)	138, 188, 462, 552, 750, 753, 762, 977, 980
BlsI	GCNGC	9 cut(s)	139, 189, 463, 553, 751, 754, 763, 978, 981
Bme1390I	CCNGG	3 cut(s)	107, 293, 926
Bme18I	GGWCC	2 cut(s)	237, 922
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	2 cut(s)	237, 922
BmiI	GGNNCC	2 cut(s)	239, 561
BmrFI	CCNGG	3 cut(s)	107, 293, 926
BmsI	GCATC	4 cut(s)	28, 623, 942, 1168
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	242
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	105, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	756
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	107, 293, 926
BseDI	CCNNGG	2 cut(s)	105, 783
BseGI	GGATG	2 cut(s)	933, 1159
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	8 cut(s)	149, 199, 448, 739, 748, 761, 963, 966
BseYI	CCCAGC	2 cut(s)	494, 554
BsgI	GTGCAG	1 cut(s)	747
BshFI	GGCC	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	1111
BslFI	GGGAC	2 cut(s)	223, 873
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	727
BsmFI	GGGAC	2 cut(s)	223, 873
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	151, 559, 1041
BspACI	CCGC	2 cut(s)	190, 551
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	239, 561
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	3 cut(s)	146, 554, 567
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	105, 783
BssMI	GATC	3 cut(s)	151, 559, 1041
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	3 cut(s)	107, 293, 926
Bst4CI	ACNGT	4 cut(s)	383, 588, 598, 1135
Bst6I	CTCTTC	2 cut(s)	332, 1002
BstAFI	CTTAAG	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	43, 1085
BstF5I	GGATG	2 cut(s)	933, 1159
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	3 cut(s)	154, 562, 1044
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	3 cut(s)	151, 559, 1041
BstMWI	GCNNNNNNNGC	4 cut(s)	548, 758, 761, 995
BstNI	CCWGG	3 cut(s)	107, 293, 926
BstNSI	RCATGY	1 cut(s)	1097
BstSCI	CCNGG	3 cut(s)	105, 291, 924
BstSFI	CTRYAG	2 cut(s)	462, 741
BstV1I	GCAGC	8 cut(s)	149, 199, 448, 739, 748, 761, 963, 966
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	933, 1159
BtsI	GCAGTG	2 cut(s)	111, 425
BtsIMutI	CAGTG	4 cut(s)	111, 425, 678, 1140
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	237, 922
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	3 cut(s)	77, 286, 1094
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	43, 1085
DpnI	GATC	3 cut(s)	153, 561, 1043
DpnII	GATC	3 cut(s)	151, 559, 1041
Eam1104I	CTCTTC	2 cut(s)	332, 1002
EarI	CTCTTC	2 cut(s)	332, 1002
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	237, 922
Eco53kI	GAGCTC	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	922
EcoRII	CCWGG	3 cut(s)	105, 291, 924
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	80, 289, 1097
FaiI	YATR	8 cut(s)	78, 287, 332, 334, 603, 836, 1095, 1118
FaqI	GGGAC	2 cut(s)	223, 873
FatI	CATG	3 cut(s)	76, 285, 1093
Fnu4HI	GCNGC	9 cut(s)	138, 188, 462, 552, 750, 753, 762, 977, 980
FokI	GGATG	2 cut(s)	920, 1146
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	9 cut(s)	138, 188, 462, 552, 750, 753, 762, 977, 980
FspBI	CTAG	2 cut(s)	314, 1028
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	9 cut(s)	138, 188, 462, 552, 750, 753, 762, 977, 980
GsaI	CCCAGC	2 cut(s)	498, 558
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	1 cut(s)	1111
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	3 cut(s)	80, 289, 1097
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HindIII	AAGCTT	2 cut(s)	678, 1052
HinfI	GANTC	4 cut(s)	251, 310, 607, 971
HpaII	CCGG	1 cut(s)	1111
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	949
Hpy188I	TCNGA	3 cut(s)	220, 594, 938
Hpy188III	TCNNGA	3 cut(s)	45, 314, 1045
Hpy8I	GTNNAC	1 cut(s)	949
HpyAV	CCTTC	3 cut(s)	319, 913, 1117
HpyCH4III	ACNGT	4 cut(s)	383, 588, 598, 1135
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	7 cut(s)	163, 321, 464, 634, 764, 895, 982
HpyF10VI	GCNNNNNNNGC	4 cut(s)	548, 758, 761, 995
HpyF3I	CTNAG	2 cut(s)	43, 1085
HpySE526I	ACGT	1 cut(s)	905
Hsp92II	CATG	3 cut(s)	80, 289, 1097
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	3 cut(s)	151, 559, 1041
LmnI	GCTCC	2 cut(s)	131, 791
Lsp1109I	GCAGC	8 cut(s)	149, 199, 448, 739, 748, 761, 963, 966
LweI	GCATC	4 cut(s)	28, 623, 942, 1168
MaeI	CTAG	2 cut(s)	314, 1028
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	3 cut(s)	265, 775, 910
MalI	GATC	3 cut(s)	153, 561, 1043
MboI	GATC	3 cut(s)	151, 559, 1041
MboII	GAAGA	4 cut(s)	349, 377, 494, 1019
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	7 cut(s)	14, 100, 453, 533, 953, 960, 1152
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	799
MseI	TTAA	3 cut(s)	426, 527, 546
MslI	CAYNNNNRTG	1 cut(s)	938
MspA1I	CMGCKG	3 cut(s)	190, 448, 752
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	1111
MspR9I	CCNGG	3 cut(s)	107, 293, 926
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	3 cut(s)	107, 293, 926
MwoI	GCNNNNNNNGC	4 cut(s)	548, 758, 761, 995
NdeII	GATC	3 cut(s)	151, 559, 1041
NlaIII	CATG	3 cut(s)	80, 289, 1097
NlaIV	GGNNCC	2 cut(s)	239, 561
NspI	RCATGY	1 cut(s)	1097
PaeR7I	CTCGAG	1 cut(s)	413
PctI	GAATGC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	310, 607, 971
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	9 cut(s)	139, 189, 463, 553, 751, 754, 763, 978, 981
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	922
PsiI	TTATAA	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	905
Psp5II	RGGWCCY	1 cut(s)	922
Psp6I	CCWGG	3 cut(s)	105, 291, 924
PspFI	CCCAGC	2 cut(s)	494, 554
PspGI	CCWGG	3 cut(s)	105, 291, 924
PspN4I	GGNNCC	2 cut(s)	239, 561
PspPI	GGNCC	2 cut(s)	237, 922
PspPPI	RGGWCCY	1 cut(s)	922
PspXI	VCTCGAGB	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	895, 927
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	559
PvuII	CAGCTG	2 cut(s)	448, 752
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	938
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	426, 527, 546
SatI	GCNGC	9 cut(s)	138, 188, 462, 552, 750, 753, 762, 977, 980
Sau3AI	GATC	3 cut(s)	151, 559, 1041
Sau96I	GGNCC	2 cut(s)	237, 922
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	107, 293, 926
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	4 cut(s)	28, 623, 942, 1168
SfcI	CTRYAG	2 cut(s)	462, 741
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	2 cut(s)	237, 922
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	938
SmlI	CTYRAG	3 cut(s)	257, 413, 425
SmoI	CTYRAG	3 cut(s)	257, 413, 425
Sse9I	AATT	7 cut(s)	14, 100, 453, 533, 953, 960, 1152
SsiI	CCGC	2 cut(s)	190, 551
SspMI	CTAG	2 cut(s)	314, 1028
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	105, 291, 924
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	4 cut(s)	383, 588, 598, 1135
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	3 cut(s)	150, 282, 414
TaqII	GACCGA	1 cut(s)	225
TasI	AATT	7 cut(s)	14, 100, 453, 533, 953, 960, 1152
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	3 cut(s)	310, 607, 971
Tru1I	TTAA	3 cut(s)	426, 527, 546
Tru9I	TTAA	3 cut(s)	426, 527, 546
TscAI	CASTG	4 cut(s)	118, 425, 678, 1140
TseI	GCWGC	8 cut(s)	137, 187, 461, 749, 752, 761, 976, 979
TspDTI	ATGAA	2 cut(s)	93, 302
TspGWI	ACGGA	2 cut(s)	284, 584
TspRI	CASTG	4 cut(s)	118, 425, 678, 1140
Van91I	CCANNNNNTGG	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	237, 922
XapI	RAATTY	2 cut(s)	14, 953
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	1097
XhoI	CTCGAG	1 cut(s)	413
XspI	CTAG	2 cut(s)	314, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.