Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294297.1

Orthogroup ID

OG0002238

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 878

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294297.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 878 bp

ccgccgccgccgccgccgccacaacaacccctcgaaagcaataccaaatccgagtacacagcccatttgagctcttatgaggcagcctgtaagctcgattcgggtttacaatcgtttgatgtatctctccaacagcgcactagccgagtcttcaactcactttccactggagttgaagttaggtccctatctttggactcactcaaagaggtcactgattgtttgcttgagatgaaccaggaagtggtcagtgtcattctcgaatgcaagaaggatgtatggaacaatcaagagatgttctctctagtggaggagtactttgagaacagtctccagacattggacttctgtactgccctcgagagatgtctcaagcgtgcagtgaacaatcagctgataattcaggctgcggtgaggcagtttgaggaagaagtagaagctggtttcgaagggaaggggtgtgtgaggacattgcaggagttgagggcatttaaggcagccagggaccctttcacggaggagttctttgtactatttcaggcagtttataaccaacaggcatcgatgctccagaaattgcaagtccgaaagagaaagcttgataagaagttgaaatcagtgaaagcctggcggaaagtgtcaaatgttatttttgttgccacttttgtgtctgtattgatattttcggtggtggcagctgccattgctgcaccgccacttgtaaccgccttggctggtgcactggctgttccgataggttctgttggaaaatggtgtaatatgctttggagccgctatgagagggctctgaaagggcagagggagataataagctcaatgcaggttggaagtatgattacaatgacagacttgaacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

7.93

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18630 AT2G18630
fragaria_vesca	FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13660 FvH4_1g13670 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080 FvH4_1g14080
malus_domestica	MD02G1154800.v1.1 MD11G1180100.v1.1 MD15G1269200.v1.1
prunus_persica	Prupe.7G148500_v2.0.a1
pyrus_communis	pycom02g15720
rosa_chinensis	RchiOBHm_Chr2g0102731 RchiOBHm_Chr2g0102741
rosa_laevigata	RLG00000017176
rosa_multiflora	Rmu_co8294297.1_g000001 Rmu_sc0006537.1_g000037 Rmu_sc0006537.1_g000040
rosa_roxburghii	Rroxscaffold_2G00140350 Rroxscaffold_2G00140360
rosa_rugosa	Rorug02G0109300 Rorug02G0109300
rosa_samantha	Rh2AG157500 Rh2AG157600 Rh2BG164000 Rh2BG164100 Rh2CG163700 Rh2CG163800 Rh2DG162800 Rh2DG162900
rosa_wichuraiana	Rw2G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	2 cut(s)	244, 340
AfaI	GTAC	4 cut(s)	56, 317, 352, 531
AfiI	CCNNNNNNNGG	4 cut(s)	193, 244, 340, 514
AgsI	TTSAA	4 cut(s)	154, 176, 613, 874
AjnI	CCWGG	3 cut(s)	237, 500, 626
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	7 cut(s)	72, 94, 394, 440, 598, 698, 834
AluI	AGCT	7 cut(s)	72, 94, 394, 440, 598, 698, 834
Alw21I	GWGCWC	2 cut(s)	74, 742
Alw26I	GTCTC	2 cut(s)	335, 374
Alw44I	GTGCAC	1 cut(s)	738
Ama87I	CYCGRG	1 cut(s)	359
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	6 cut(s)	83, 407, 497, 695, 698, 707
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	183, 505
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	447
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	183, 505
BaeGI	GKGCMC	1 cut(s)	742
BanII	GRGCYC	2 cut(s)	74, 808
BarI	GAAGNNNNNNTAC	2 cut(s)	841, 873
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	74, 742
BbvI	GCAGC	6 cut(s)	95, 394, 509, 685, 694, 707
BciT130I	CCWGG	3 cut(s)	239, 502, 628
BcoDI	GTCTC	2 cut(s)	335, 374
BfaI	CTAG	2 cut(s)	141, 305
BfuAI	ACCTGC	1 cut(s)	832
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	3 cut(s)	239, 502, 628
Bme18I	GGWCC	2 cut(s)	183, 505
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	183, 505
BmiI	GGNNCC	4 cut(s)	185, 506, 507, 791
BmrFI	CCNGG	3 cut(s)	239, 502, 628
BmsI	GCATC	2 cut(s)	555, 569
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	3 cut(s)	189, 317, 554
Bpu14I	TTCGAA	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	248, 356
Bsa29I	ATCGAT	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	501, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 244, 340, 514
Bse1I	ACTGG	2 cut(s)	172, 747
Bse3DI	GCAATG	2 cut(s)	470, 702
BseBI	CCWGG	3 cut(s)	239, 502, 628
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	501, 729
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	4 cut(s)	193, 244, 340, 514
BseMI	GCAATG	2 cut(s)	470, 702
BseNI	ACTGG	2 cut(s)	172, 747
BseRI	GAGGAG	2 cut(s)	326, 533
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	6 cut(s)	95, 394, 509, 685, 694, 707
BsgI	GTGCAG	2 cut(s)	399, 693
BshVI	ATCGAT	1 cut(s)	563
BsiHKAI	GWGCWC	2 cut(s)	74, 742
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	169, 518
BslI	CCNNNNNNNGG	4 cut(s)	193, 244, 340, 514
BsmAI	GTCTC	2 cut(s)	335, 374
BsmFI	GGGAC	2 cut(s)	169, 518
BsmI	GAATGC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	74, 742, 808
BspDI	ATCGAT	1 cut(s)	563
BspLI	GGNNCC	4 cut(s)	185, 506, 507, 791
BspMI	ACCTGC	1 cut(s)	832
BspT104I	TTCGAA	1 cut(s)	447
BsrDI	GCAATG	2 cut(s)	470, 702
BsrI	ACTGG	2 cut(s)	172, 747
BssECI	CCNNGG	2 cut(s)	501, 729
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	3 cut(s)	239, 502, 628
Bst4CI	ACNGT	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	335, 374
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 13, 16, 494, 704, 707
BstNI	CCWGG	3 cut(s)	239, 502, 628
BstSCI	CCNGG	3 cut(s)	237, 500, 626
BstSLI	GKGCMC	1 cut(s)	742
BstV1I	GCAGC	6 cut(s)	95, 394, 509, 685, 694, 707
BstV2I	GAAGAC	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	563
BsuTUI	ATCGAT	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	6 cut(s)	165, 213, 256, 387, 624, 740
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	183, 505
ClaI	ATCGAT	1 cut(s)	563
Csp6I	GTAC	4 cut(s)	55, 316, 351, 530
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviQI	GTAC	4 cut(s)	55, 316, 351, 530
EciI	GGCGGA	1 cut(s)	646
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	2 cut(s)	74, 808
Eco47I	GGWCC	2 cut(s)	183, 505
Eco53kI	GAGCTC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	72
EcoO109I	RGGNCCY	2 cut(s)	183, 505
EcoRII	CCWGG	3 cut(s)	237, 500, 626
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	2 cut(s)	74, 808
ErhI	CCWWGG	1 cut(s)	729
FaiI	YATR	6 cut(s)	78, 280, 549, 782, 798, 854
FaqI	GGGAC	2 cut(s)	169, 518
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	2 cut(s)	74, 808
FspBI	CTAG	2 cut(s)	141, 305
GlaI	GCGC	1 cut(s)	137
GsuI	CTGGAG	3 cut(s)	189, 317, 554
HhaI	GCGC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	3 cut(s)	98, 147, 197
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	4 cut(s)	57, 107, 385, 740
Hpy188I	TCNGA	4 cut(s)	52, 587, 753, 810
Hpy188III	TCNNGA	5 cut(s)	260, 290, 334, 361, 571
Hpy8I	GTNNAC	4 cut(s)	57, 107, 385, 740
HpyAV	CCTTC	3 cut(s)	265, 443, 448
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	7 cut(s)	267, 380, 475, 580, 710, 740, 841
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 13, 16, 494, 704, 707
HspAI	GCGC	1 cut(s)	136
KflI	GGGWCCC	1 cut(s)	505
LmnI	GCTCC	2 cut(s)	573, 789
Lsp1109I	GCAGC	6 cut(s)	95, 394, 509, 685, 694, 707
LweI	GCATC	2 cut(s)	555, 569
MaeI	CTAG	2 cut(s)	141, 305
MaeIII	GTNAC	2 cut(s)	211, 721
MboII	GAAGA	2 cut(s)	142, 440
MhlI	GDGCHC	3 cut(s)	74, 742, 808
MluCI	AATT	2 cut(s)	399, 575
MlyI	GAGTC	2 cut(s)	156, 191
MmeI	TCCRAC	3 cut(s)	154, 745, 826
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	665
MspA1I	CMGCKG	2 cut(s)	394, 698
MspR9I	CCNGG	3 cut(s)	239, 502, 628
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	3 cut(s)	239, 502, 628
MwoI	GCNNNNNNNGC	6 cut(s)	10, 13, 16, 494, 704, 707
NlaIV	GGNNCC	4 cut(s)	185, 506, 507, 791
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	447
OliI	CACNNNNGTG	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	244, 340
PleI	GAGTC	2 cut(s)	155, 191
PpsI	GAGTC	2 cut(s)	155, 191
PpuMI	RGGWCCY	2 cut(s)	183, 505
PsiI	TTATAA	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	74
Psp5II	RGGWCCY	2 cut(s)	183, 505
Psp6I	CCWGG	3 cut(s)	237, 500, 626
PspGI	CCWGG	3 cut(s)	237, 500, 626
PspN4I	GGNNCC	4 cut(s)	185, 506, 507, 791
PspPI	GGNCC	2 cut(s)	183, 505
PspPPI	RGGWCCY	2 cut(s)	183, 505
PvuII	CAGCTG	2 cut(s)	394, 698
RsaI	GTAC	4 cut(s)	56, 317, 352, 531
RsaNI	GTAC	4 cut(s)	55, 316, 351, 530
RseI	CAYNNNNRTG	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	492
Sau96I	GGNCC	2 cut(s)	183, 505
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	2 cut(s)	156, 191
ScrFI	CCNGG	3 cut(s)	239, 502, 628
SduI	GDGCHC	3 cut(s)	74, 742, 808
SfaNI	GCATC	2 cut(s)	555, 569
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	447
SinI	GGWCC	2 cut(s)	183, 505
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	3 cut(s)	227, 359, 371
SmoI	CTYRAG	3 cut(s)	227, 359, 371
Sse9I	AATT	2 cut(s)	399, 575
SspMI	CTAG	2 cut(s)	141, 305
SstI	GAGCTC	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	237, 500, 626
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	6 cut(s)	33, 96, 261, 360, 447, 563
TasI	AATT	2 cut(s)	399, 575
TatI	WGTACW	4 cut(s)	54, 315, 350, 529
TauI	GCSGC	6 cut(s)	7, 10, 13, 16, 19, 795
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	6 cut(s)	172, 220, 256, 387, 624, 747
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	6 cut(s)	83, 407, 497, 695, 698, 707
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	6 cut(s)	172, 220, 256, 387, 624, 747
Van91I	CCANNNNNTGG	2 cut(s)	244, 340
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	2 cut(s)	183, 505
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	2 cut(s)	141, 305
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.