FvH4_1g13670

UPF0496 protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
7531812 .. 7533424
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13670.t1

Sequence Viewer

Length: 1446 bp
ATGTCTATGACTCTGAATTTTCTCGGAGGAGCACCTTTTCAACTGCTCTACGATGGTGTTAAGTTGGCCATGAACAATACTAGTAAGTTCAAAACCCACCTCAGGTGTTTGAAATTCACTCTTGATTGTCTACAGCCACAGATCATAGAACAGATTAGATTGCAGAACCTGCAGCTGAATATCCCCGTCCAAGAAATACAAGTACTTGAGAGGAAAATTGATGAAGGCATAGTGCTCGTTGGTCGGTTATCAAGCATCAACACTTGTAACATCCGCGTCTGGGGAAATTGCTGCAACTGCTTGATCGTTAGCTATGCAGACCAGCTTGATGAGTTGGATGAGTCTCTCAGACGTCTGCTGGAAATACTGAGGCTGCAGTCATTAGCTCAAATCAACCAGATAGGGATTTGGGCAAGGACAACAAGGGATAGACAAGATGAGCTGGGGAGAAGACAGCTGGAGATTCTTAGCAACCAGCGACTTATTATTGATACGCAGCGGCAAATAATAGAGATGGTTCAAAAGAATAGTGTTGCAGCGTCAACCGGAAAAGGATCTCCTTCTGTTCAGGGGTTGCGCCTTGGAGAAGTATTTCAGACACTGTTTGATGCTGTTGTACAAGTAAAAGGCAAAAATTCCAAGTTCAAACGACTCCTGGAAGATTTCAAGTTCACACTGGATTGCTTGAAACCACTGGTACAAGAGATAGTAGAATGTAACAAGGTATTGCATTTTCCAAAAGAGGAAATCTTGGAGGATTTCATAGTGTACTTGAAGAAAGGTGAAGAGCTCGTTTACAAATGTTCCAAGAGTTCTCTGTGGAACAGGTTCAAAAAGTTCAAGTACATCAACAGCCTTTTTGAACTAGATGAATCTCTTCAGAGGCTGTTCAATATACTGAGATTGCAGATAGAAACTGATGTGAAGGAGGCCTTGGTTTCTGTAAGCAAGTTGGAAAAGGAAATCGAGGAAATTGAAGGGAGTTTTGTGCTACAACATCATCAATATGAAAGCGCTGCAGCTGAACCTCAATTGCCAAAAGTTGAAGTGGATGTAATGAAGGAGTCTATGGATTCAATAGGGAATGTAGAGGTGGGAGATGAAAGTCACATGCGAACTGAAGGGAGTAGTCTGGCATCCCGTCAAATTGATGTTGCTGTAGAGGAGGAGGAGAGGGAGCCTCTATCACCTACAATATTAGCTGGGATCACAGAATTATTTGATTCGGCACTGGCAAGAAGTAACATGGAGGTGGGAGACGAACGAACCGTTGGGCAAGGGGAAGAGGATAAAGAAATATGGCAACTCCCGTGTAAAGTAGCAGAGAAGGAAACCACAACACTTGCATTTCCTATTTTGGCTTTTAACAAAAGGCAAGCGTCAGTAGAAACTGTTGTGAAAACTTACGAAGGGCACTATGCTGCGGACACTAGTAGTTCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

482

Amino Acids

54.78

Weight (kDa)

5.14

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 10 - 127 3.6e-08 Arabidopsis broad-spectrum mildew resistance protein RPW8
RPW8 PF05659 190 - 323 5.4e-24 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 130
AccII CGCG 1 cut(s) 276
AciI CCGC 3 cut(s) 274, 499, 1424
AclWI GGATC 2 cut(s) 562, 1214
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 3 cut(s) 16, 113, 634
AcuI CTGAAG 2 cut(s) 863, 1140
AcyI GRCGYC 1 cut(s) 352
AfaI GTAC 5 cut(s) 204, 618, 699, 770, 845
AfeI AGCGCT 1 cut(s) 1015
AfiI CCNNNNNNNGG 2 cut(s) 102, 280
AhlI ACTAGT 2 cut(s) 80, 1430
AjnI CCWGG 1 cut(s) 654
AjuI GAANNNNNNNTTGG 4 cut(s) 917, 949, 1254, 1286
AluBI AGCT 9 cut(s) 175, 312, 325, 386, 442, 457, 790, 1022, 1202
AluI AGCT 9 cut(s) 175, 312, 325, 386, 442, 457, 790, 1022, 1202
Alw21I GWGCWC 3 cut(s) 34, 237, 792
Alw26I GTCTC 2 cut(s) 348, 1251
AlwI GGATC 2 cut(s) 562, 1214
AlwNI CAGNNNCTG 3 cut(s) 169, 601, 886
Aor51HI AGCGCT 1 cut(s) 1015
AoxI GGCC 2 cut(s) 66, 930
ApeKI GCWGC 8 cut(s) 172, 291, 373, 496, 536, 1016, 1019, 1421
ApoI RAATTY 3 cut(s) 16, 113, 634
Asp700I GAANNNNTTC 3 cut(s) 591, 827, 876
AspLEI GCGC 2 cut(s) 579, 1016
AsuHPI GGTGA 2 cut(s) 794, 1179
AxyI CCTNAGG 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 1416
BalI TGGCCA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 792
BbsI GAAGAC 1 cut(s) 457
Bbv12I GWGCWC 3 cut(s) 34, 237, 792
BbvI GCAGC 8 cut(s) 184, 278, 360, 508, 548, 1003, 1031, 1408
BccI CCATC 2 cut(s) 47, 508
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 1 cut(s) 656
BcoDI GTCTC 2 cut(s) 348, 1251
BcuI ACTAGT 2 cut(s) 80, 1430
BfaI CTAG 3 cut(s) 81, 866, 1431
BfmI CTRYAG 5 cut(s) 131, 170, 374, 1017, 1158
BfoI RGCGCY 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 9 cut(s) 173, 292, 374, 497, 500, 537, 1017, 1020, 1422
BlsI GCNGC 9 cut(s) 174, 293, 375, 498, 501, 538, 1018, 1021, 1423
BmcAI AGTACT 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 1179
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 3 cut(s) 264, 598, 1145
BpiI GAAGAC 1 cut(s) 457
BplI GAGNNNNNCTC 2 cut(s) 1165, 1197
BpmI CTGGAG 1 cut(s) 479
BpuEI CTTGAG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 580, 933
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 280
Bse1I ACTGG 3 cut(s) 681, 699, 1236
Bse21I CCTNAGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 2 cut(s) 580, 933
BseGI GGATG 4 cut(s) 270, 343, 1057, 1136
BseLI CCNNNNNNNGG 2 cut(s) 102, 280
BseMII CTCAG 4 cut(s) 115, 359, 361, 890
BseNI ACTGG 3 cut(s) 681, 699, 1236
BseRI GAGGAG 4 cut(s) 42, 1178, 1181, 1184
BseSI GKGCMC 1 cut(s) 1416
BseXI GCAGC 8 cut(s) 184, 278, 360, 508, 548, 1003, 1031, 1408
BseYI CCCAGC 2 cut(s) 442, 1202
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 68, 932
BsiHKAI GWGCWC 3 cut(s) 34, 237, 792
BsiSI CCGG 1 cut(s) 546
BslI CCNNNNNNNGG 2 cut(s) 102, 280
BsmAI GTCTC 2 cut(s) 348, 1251
BsmBI CGTCTC 1 cut(s) 1251
BsnI GGCC 2 cut(s) 68, 932
Bsp1286I GDGCHC 4 cut(s) 34, 237, 792, 1416
Bsp1407I TGTACA 1 cut(s) 616
Bsp143I GATC 4 cut(s) 141, 303, 554, 1206
BspACI CCGC 3 cut(s) 274, 499, 1424
BspANI GGCC 2 cut(s) 68, 932
BspCNI CTCAG 4 cut(s) 114, 360, 360, 891
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 1179
BspMAI CTGCAG 3 cut(s) 174, 378, 1021
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 2 cut(s) 562, 1214
BspQI GCTCTTC 1 cut(s) 780
BsrGI TGTACA 1 cut(s) 616
BsrI ACTGG 3 cut(s) 681, 699, 1236
BssECI CCNNGG 2 cut(s) 580, 933
BssMI GATC 4 cut(s) 141, 303, 554, 1206
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 580, 933
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 3 cut(s) 603, 1270, 1393
Bst6I CTCTTC 3 cut(s) 780, 882, 1278
BstACI GRCGYC 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 1377
BstDEI CTNAG 5 cut(s) 101, 347, 368, 467, 899
BstF5I GGATG 4 cut(s) 270, 343, 1057, 1136
BstFNI CGCG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 1017
BstHHI GCGC 2 cut(s) 579, 1016
BstKTI GATC 4 cut(s) 144, 306, 557, 1209
BstMAI GTCTC 2 cut(s) 348, 1251
BstMBI GATC 4 cut(s) 141, 303, 554, 1206
BstMWI GCNNNNNNNGC 2 cut(s) 169, 297
BstNI CCWGG 1 cut(s) 656
BstNSI RCATGY 1 cut(s) 1114
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 5 cut(s) 131, 170, 374, 1017, 1158
BstSLI GKGCMC 1 cut(s) 1416
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 8 cut(s) 184, 278, 360, 508, 548, 1003, 1031, 1408
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 2 cut(s) 68, 932
BtsCI GGATG 4 cut(s) 270, 343, 1057, 1136
BtsIMutI CAGTG 4 cut(s) 599, 674, 692, 1229
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 1377
CaiI CAGNNNCTG 3 cut(s) 169, 601, 886
CfoI GCGC 2 cut(s) 579, 1016
CseI GACGC 3 cut(s) 265, 528, 1368
Csp6I GTAC 5 cut(s) 203, 617, 698, 769, 844
CspCI CAANNNNNGTGG 2 cut(s) 1324, 1359
CviAII CATG 3 cut(s) 70, 1111, 1246
CviQI GTAC 5 cut(s) 203, 617, 698, 769, 844
DdeI CTNAG 5 cut(s) 101, 347, 368, 467, 899
DpnI GATC 4 cut(s) 143, 305, 556, 1208
DpnII GATC 4 cut(s) 141, 303, 554, 1206
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 780, 882, 1278
EarI CTCTTC 3 cut(s) 780, 882, 1278
Ecl136II GAGCTC 1 cut(s) 790
Eco130I CCWWGG 2 cut(s) 580, 933
Eco147I AGGCCT 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 792
Eco47III AGCGCT 1 cut(s) 1015
Eco53kI GAGCTC 1 cut(s) 790
Eco57I CTGAAG 2 cut(s) 863, 1140
Eco81I CCTNAGG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 654
EcoT14I CCWWGG 2 cut(s) 580, 933
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 2 cut(s) 580, 933
Esp3I CGTCTC 1 cut(s) 1251
FaeI CATG 3 cut(s) 73, 1114, 1249
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FatI CATG 3 cut(s) 69, 1110, 1245
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 9 cut(s) 173, 292, 374, 497, 500, 537, 1017, 1020, 1422
FokI GGATG 4 cut(s) 257, 350, 1064, 1123
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 9 cut(s) 173, 292, 374, 497, 500, 537, 1017, 1020, 1422
FspBI CTAG 3 cut(s) 81, 866, 1431
GlaI GCGC 2 cut(s) 578, 1015
GluI GCNGC 9 cut(s) 173, 292, 374, 497, 500, 537, 1017, 1020, 1422
GsaI CCCAGC 2 cut(s) 446, 1206
GsuI CTGGAG 1 cut(s) 479
HaeII RGCGCY 1 cut(s) 1017
HaeIII GGCC 2 cut(s) 68, 932
HapII CCGG 1 cut(s) 546
HgaI GACGC 3 cut(s) 265, 528, 1368
HhaI GCGC 2 cut(s) 579, 1016
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 3 cut(s) 73, 1114, 1249
Hin6I GCGC 2 cut(s) 577, 1014
HinP1I GCGC 2 cut(s) 577, 1014
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 8 cut(s) 10, 341, 463, 651, 872, 1064, 1073, 1223
HpaII CCGG 1 cut(s) 546
HphI GGTGA 2 cut(s) 794, 1179
Hpy166II GTNNAC 5 cut(s) 131, 543, 672, 769, 796
Hpy188I TCNGA 6 cut(s) 15, 26, 350, 597, 882, 1441
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 5 cut(s) 131, 543, 672, 769, 796
HpyAV CCTTC 8 cut(s) 218, 570, 919, 971, 1054, 1115, 1321, 1403
HpyCH4III ACNGT 3 cut(s) 603, 1270, 1393
HpyCH4IV ACGT 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 297
HpyF3I CTNAG 5 cut(s) 101, 347, 368, 467, 899
HpySE526I ACGT 1 cut(s) 352
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 3 cut(s) 73, 1114, 1249
HspAI GCGC 2 cut(s) 577, 1014
Kzo9I GATC 4 cut(s) 141, 303, 554, 1206
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 2 cut(s) 29, 1177
Lsp1109I GCAGC 8 cut(s) 184, 278, 360, 508, 548, 1003, 1031, 1408
LweI GCATC 3 cut(s) 264, 598, 1145
MaeI CTAG 3 cut(s) 81, 866, 1431
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 4 cut(s) 266, 716, 1106, 1241
MalI GATC 4 cut(s) 143, 305, 556, 1208
MboI GATC 4 cut(s) 141, 303, 554, 1206
MboII GAAGA 6 cut(s) 462, 671, 787, 797, 869, 1295
MfeI CAATTG 1 cut(s) 1031
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 4 cut(s) 34, 237, 792, 1416
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 9 cut(s) 16, 113, 216, 286, 634, 972, 1031, 1146, 1214
MluNI TGGCCA 1 cut(s) 68
MlyI GAGTC 4 cut(s) 4, 350, 645, 1073
MmeI TCCRAC 2 cut(s) 315, 933
Mox20I TGGCCA 1 cut(s) 68
MroXI GAANNNNTTC 3 cut(s) 591, 827, 876
MscI TGGCCA 1 cut(s) 68
MseI TTAA 2 cut(s) 60, 1365
MslI CAYNNNNRTG 2 cut(s) 1005, 1250
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 4 cut(s) 175, 457, 499, 1022
MspI CCGG 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 656
MunI CAATTG 1 cut(s) 1031
MvaI CCWGG 1 cut(s) 656
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 169, 297
NdeII GATC 4 cut(s) 141, 303, 554, 1206
NlaIII CATG 3 cut(s) 73, 1114, 1249
NlaIV GGNNCC 1 cut(s) 1179
NmuCI GTSAC 1 cut(s) 1106
NspI RCATGY 1 cut(s) 1114
PceI AGGCCT 1 cut(s) 932
PciSI GCTCTTC 1 cut(s) 780
PcsI WCGNNNNNNNCGW 1 cut(s) 1266
PdmI GAANNNNTTC 3 cut(s) 591, 827, 876
PfeI GAWTC 4 cut(s) 463, 872, 1073, 1223
PfoI TCCNGGA 1 cut(s) 654
PkrI GCNGC 9 cut(s) 174, 293, 375, 498, 501, 538, 1018, 1021, 1423
PleI GAGTC 4 cut(s) 4, 349, 645, 1072
PpsI GAGTC 4 cut(s) 4, 349, 645, 1072
Psp124BI GAGCTC 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 654
PspFI CCCAGC 2 cut(s) 442, 1202
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 1179
PstI CTGCAG 3 cut(s) 174, 378, 1021
PstNI CAGNNNCTG 3 cut(s) 169, 601, 886
PsuI RGATCY 1 cut(s) 554
PvuII CAGCTG 3 cut(s) 175, 457, 1022
RsaI GTAC 5 cut(s) 204, 618, 699, 770, 845
RsaNI GTAC 5 cut(s) 203, 617, 698, 769, 844
RseI CAYNNNNRTG 2 cut(s) 1005, 1250
SacI GAGCTC 1 cut(s) 792
SapI GCTCTTC 1 cut(s) 780
SaqAI TTAA 2 cut(s) 60, 1365
SatI GCNGC 9 cut(s) 173, 292, 374, 497, 500, 537, 1017, 1020, 1422
Sau3AI GATC 4 cut(s) 141, 303, 554, 1206
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 4 cut(s) 4, 350, 645, 1073
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 4 cut(s) 34, 237, 792, 1416
SfaNI GCATC 3 cut(s) 264, 598, 1145
SfcI CTRYAG 5 cut(s) 131, 170, 374, 1017, 1158
SmiMI CAYNNNNRTG 2 cut(s) 1005, 1250
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SpeI ACTAGT 2 cut(s) 80, 1430
Sse9I AATT 9 cut(s) 16, 113, 216, 286, 634, 972, 1031, 1146, 1214
SseBI AGGCCT 1 cut(s) 932
SsiI CCGC 3 cut(s) 274, 499, 1424
SspI AATATT 1 cut(s) 1197
SspMI CTAG 3 cut(s) 81, 866, 1431
SstI GAGCTC 1 cut(s) 792
StuI AGGCCT 1 cut(s) 932
StyD4I CCNGG 1 cut(s) 654
StyI CCWWGG 2 cut(s) 580, 933
TaaI ACNGT 3 cut(s) 603, 1270, 1393
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 966
TasI AATT 9 cut(s) 16, 113, 216, 286, 634, 972, 1031, 1146, 1214
TatI WGTACW 4 cut(s) 202, 616, 768, 843
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 4 cut(s) 463, 872, 1073, 1223
Tru1I TTAA 2 cut(s) 60, 1365
Tru9I TTAA 2 cut(s) 60, 1365
TscAI CASTG 4 cut(s) 606, 681, 699, 1236
TseFI GTSAC 1 cut(s) 1106
TseI GCWGC 8 cut(s) 172, 291, 373, 496, 536, 1016, 1019, 1421
Tsp45I GTSAC 1 cut(s) 1106
TspDTI ATGAA 7 cut(s) 86, 237, 751, 885, 1023, 1073, 1116
TspRI CASTG 4 cut(s) 606, 681, 699, 1236
XapI RAATTY 3 cut(s) 16, 113, 634
XceI RCATGY 1 cut(s) 1114
XmiI GTMKAC 1 cut(s) 130
XmnI GAANNNNTTC 3 cut(s) 591, 827, 876
XspI CTAG 3 cut(s) 81, 866, 1431
ZraI GACGTC 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.