AT2G19620

Ndr family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001208
Physical Location & Seq
Reverse (-)
8485991 .. 8488963
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19620.3

Sequence Viewer

Length: 1044 bp
ATGGTGGGTTTAAACAACGCCGTCTCACTCGACATTGAAGAGATCTGCAATGGTGGCAAGGAGCATCATGTCAAAACTTGCCATGGTTCAGTTTCAGTTGTAGTATATGGAGATCAAGAGAAACCAGCATTGATCACTTATCCAGATGTAGCACTAAACTATATGTCTTGTTTCCAAGGATTGTTTCTATGCCCTGAAGCAGTGTCCTTACTGCTCCATAATTTCTGCATCTACCATATTAGTCCTCCAGGACATGAGTTTGGAGCTGCTCCAGTTTGTTCCAATGATCCGTCACCTTCTGTTGAAGACCTCGCGGACCAGATTCTTGAAGTATTGAACTTCTTTAGCCTCGAGGCAGTAATGTGCATGGGAATCACAGCTGGTGCCTACATCCTTTCCTTGTTTGCTATTAAACATAAAGAACGAGTTTTGGGTTTGATTCTTATATCGCCTCTATGCAAAGCACCCTCATGGTCTGAATGGTTTTATTACAAGGTTGTGTCAAACTTATTGTACTACTATGGCATGTCTGGACTGTTAAAAGATATTTTCCTTCAGAGGTACTTCAGTAAGGAAGCTCGTGGTAGCTCTGAAGTTCCAGAGCGGGATGTGGTACATGAATGCAGAAGACTGCTAGGTGAAAGACACGGTAGTAGTCTTATGCGGTTTCTAGAAGCAGTTAACAGGAGACATGACTTAACTGATGGATTGAAGAGTTTGAAATGCCGTACACTCATCTTTGTTGGCGACCAATCTCCTTTCCACTCTGAAACTCTTCACATGGTGACAGCATTGGACAGAAAGTACAGCGCCTTGGTTGAGGTGCAAGCTTGTGGATCAATGGTGACAGAAGAGCAACCACATGCAATGTTGATACCAATGGAGTTCTTTTTCATGGGGTTTGGATTGTATCGGCCTGGTCGGGTTAGCGATAGCCCCCGGAGTCCACTAAGTCCGTCATGTATTTCGCCAGAGCTTCTATCACCAGAGAGTCTTGGTTTGAAGTTAAAGCCAATAAAAACTCGGGTTCCCACGAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010817 GO:0032879 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

347

Amino Acids

38.7

Weight (kDa)

6.23

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 1 - 251 3e-101 Ndr family
Abhydrolase_1 PF00561 15 - 110 3.6e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 604
AccII CGCG 1 cut(s) 314
AciI CCGC 3 cut(s) 314, 604, 664
AclWI GGATC 2 cut(s) 281, 844
AcuI CTGAAG 4 cut(s) 216, 539, 550, 612
AdeI CACNNNGTG 1 cut(s) 784
AfaI GTAC 5 cut(s) 515, 563, 615, 730, 806
AgsI TTSAA 7 cut(s) 38, 305, 329, 337, 712, 721, 1003
AjnI CCWGG 2 cut(s) 247, 916
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 6 cut(s) 266, 380, 578, 588, 830, 976
AluI AGCT 6 cut(s) 266, 380, 578, 588, 830, 976
Alw26I GTCTC 2 cut(s) 28, 682
AlwI GGATC 2 cut(s) 281, 844
Ama87I CYCGRG 2 cut(s) 350, 1023
AoxI GGCC 1 cut(s) 914
ApeKI GCWGC 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 1 cut(s) 812
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 940
AsuHPI GGTGA 5 cut(s) 285, 650, 796, 856, 975
AvaI CYCGRG 2 cut(s) 350, 1023
AvaII GGWCC 1 cut(s) 316
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BanI GGYRCC 1 cut(s) 383
BauI CACGAG 1 cut(s) 579
BbsI GAAGAC 2 cut(s) 312, 634
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 698
BceAI ACGGC 2 cut(s) 5, 711
BciT130I CCWGG 2 cut(s) 249, 918
BclI TGATCA 1 cut(s) 132
BcnI CCSGG 1 cut(s) 940
BcoDI GTCTC 2 cut(s) 28, 682
BfaI CTAG 2 cut(s) 635, 671
BfoI RGCGCY 1 cut(s) 813
BglII AGATCT 1 cut(s) 42
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 3 cut(s) 249, 918, 940
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 2 cut(s) 350, 1023
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 2 cut(s) 385, 1029
BmrFI CCNGG 3 cut(s) 249, 918, 940
BmsI GCATC 2 cut(s) 73, 237
BpiI GAAGAC 2 cut(s) 312, 634
BpmI CTGGAG 2 cut(s) 231, 255
BpuMI CCSGG 1 cut(s) 940
BsaJI CCNNGG 4 cut(s) 82, 175, 813, 938
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 55, 873
BseBI CCWGG 2 cut(s) 249, 918
BseDI CCNNGG 4 cut(s) 82, 175, 813, 938
BseGI GGATG 2 cut(s) 390, 613
BseMI GCAATG 2 cut(s) 55, 873
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 1 cut(s) 916
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 2 cut(s) 350, 1023
BsiSI CCGG 1 cut(s) 940
BsmAI GTCTC 2 cut(s) 28, 682
BsmBI CGTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 1 cut(s) 916
BsoBI CYCGRG 2 cut(s) 350, 1023
Bsp143I GATC 5 cut(s) 42, 112, 132, 286, 836
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 3 cut(s) 314, 604, 664
BspANI GGCC 1 cut(s) 916
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 385, 1029
BspPI GGATC 2 cut(s) 281, 844
BspQI GCTCTTC 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 604
BsrDI GCAATG 2 cut(s) 55, 873
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 4 cut(s) 82, 175, 813, 938
BssMI GATC 5 cut(s) 42, 112, 132, 286, 836
BssSI CACGAG 1 cut(s) 579
BssT1I CCWWGG 3 cut(s) 82, 175, 813
Bst2BI CACGAG 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 249, 918
Bst4CI ACNGT 2 cut(s) 537, 650
Bst6I CTCTTC 4 cut(s) 33, 707, 780, 846
BstC8I GCNNGC 1 cut(s) 828
BstDEI CTNAG 1 cut(s) 950
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 390, 613
BstFNI CGCG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 813
BstHHI GCGC 1 cut(s) 812
BstKTI GATC 5 cut(s) 45, 115, 135, 289, 839
BstMAI GTCTC 2 cut(s) 28, 682
BstMBI GATC 5 cut(s) 42, 112, 132, 286, 836
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 2 cut(s) 249, 918
BstNSI RCATGY 2 cut(s) 529, 866
BstSCI CCNGG 3 cut(s) 247, 916, 938
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 253
BstV2I GAAGAC 2 cut(s) 312, 634
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 1 cut(s) 916
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 390, 613
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 828
CfoI GCGC 1 cut(s) 812
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 5 cut(s) 514, 562, 614, 729, 805
CviQI GTAC 5 cut(s) 514, 562, 614, 729, 805
DdeI CTNAG 1 cut(s) 950
DpnI GATC 5 cut(s) 44, 114, 134, 288, 838
DpnII GATC 5 cut(s) 42, 112, 132, 286, 836
DraI TTTAAA 1 cut(s) 12
DraIII CACNNNGTG 1 cut(s) 784
Eam1104I CTCTTC 4 cut(s) 33, 707, 780, 846
EarI CTCTTC 4 cut(s) 33, 707, 780, 846
Eco130I CCWWGG 3 cut(s) 82, 175, 813
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 4 cut(s) 216, 539, 550, 612
Eco88I CYCGRG 2 cut(s) 350, 1023
EcoRII CCWGG 2 cut(s) 247, 916
EcoT14I CCWWGG 3 cut(s) 82, 175, 813
ErhI CCWWGG 3 cut(s) 82, 175, 813
Esp3I CGTCTC 1 cut(s) 28
FauI CCCGC 1 cut(s) 597
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 377, 620
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 635, 671
GlaI GCGC 1 cut(s) 811
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 2 cut(s) 231, 255
HaeII RGCGCY 1 cut(s) 813
HaeIII GGCC 1 cut(s) 916
HapII CCGG 1 cut(s) 940
HhaI GCGC 1 cut(s) 812
Hin6I GCGC 1 cut(s) 810
HinP1I GCGC 1 cut(s) 810
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 5 cut(s) 322, 372, 439, 943, 991
HpaI GTTAAC 1 cut(s) 682
HpaII CCGG 1 cut(s) 940
HphI GGTGA 5 cut(s) 285, 650, 796, 856, 975
Hpy166II GTNNAC 3 cut(s) 682, 731, 947
Hpy188I TCNGA 4 cut(s) 478, 558, 592, 769
Hpy188III TCNNGA 6 cut(s) 116, 143, 326, 531, 599, 671
Hpy8I GTNNAC 3 cut(s) 682, 731, 947
HpyAV CCTTC 2 cut(s) 306, 563
HpyCH4III ACNGT 2 cut(s) 537, 650
HpyCH4V TGCA 7 cut(s) 48, 228, 366, 459, 624, 826, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 950
HspAI GCGC 1 cut(s) 810
Ksp22I TGATCA 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 682
Kzo9I GATC 5 cut(s) 42, 112, 132, 286, 836
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 4 cut(s) 61, 219, 263, 274
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 73, 237
MaeI CTAG 2 cut(s) 635, 671
MaeIII GTNAC 3 cut(s) 291, 784, 844
MalI GATC 5 cut(s) 44, 114, 134, 288, 838
MbiI CCGCTC 1 cut(s) 604
MboI GATC 5 cut(s) 42, 112, 132, 286, 836
MboII GAAGA 6 cut(s) 50, 317, 639, 724, 767, 863
MflI RGATCY 1 cut(s) 42
MluCI AATT 1 cut(s) 220
MlyI GAGTC 2 cut(s) 952, 1000
MnlI CCTC 8 cut(s) 255, 320, 346, 359, 462, 478, 552, 814
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 7 cut(s) 11, 411, 539, 681, 698, 1007, 1042
MslI CAYNNNNRTG 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 940
MspR9I CCNGG 3 cut(s) 249, 918, 940
MssI GTTTAAAC 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 2 cut(s) 249, 918
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 940
NcoI CCATGG 1 cut(s) 82
NdeII GATC 5 cut(s) 42, 112, 132, 286, 836
NlaIV GGNNCC 2 cut(s) 385, 1029
NmuCI GTSAC 3 cut(s) 291, 784, 844
NspI RCATGY 2 cut(s) 529, 866
PaeR7I CTCGAG 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 846
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 322, 372, 439
PfoI TCCNGGA 1 cut(s) 247
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 2 cut(s) 951, 999
PmeI GTTTAAAC 1 cut(s) 12
PpsI GAGTC 2 cut(s) 951, 999
Psp6I CCWGG 2 cut(s) 247, 916
PspGI CCWGG 2 cut(s) 247, 916
PspN4I GGNNCC 2 cut(s) 385, 1029
PspPI GGNCC 1 cut(s) 316
PspXI VCTCGAGB 1 cut(s) 350
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 5 cut(s) 515, 563, 615, 730, 806
RsaNI GTAC 5 cut(s) 514, 562, 614, 729, 805
RseI CAYNNNNRTG 1 cut(s) 469
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 7 cut(s) 11, 411, 539, 681, 698, 1007, 1042
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 5 cut(s) 42, 112, 132, 286, 836
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 2 cut(s) 952, 1000
ScrFI CCNGG 3 cut(s) 249, 918, 940
SfaNI GCATC 2 cut(s) 73, 237
Sfr274I CTCGAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 220
SsiI CCGC 3 cut(s) 314, 604, 664
SspMI CTAG 2 cut(s) 635, 671
StyD4I CCNGG 3 cut(s) 247, 916, 938
StyI CCWWGG 3 cut(s) 82, 175, 813
TaaI ACNGT 2 cut(s) 537, 650
TaqI TCGA 2 cut(s) 30, 351
TasI AATT 1 cut(s) 220
TatI WGTACW 2 cut(s) 513, 804
TfiI GAWTC 3 cut(s) 322, 372, 439
Tru1I TTAA 7 cut(s) 11, 411, 539, 681, 698, 1007, 1042
Tru9I TTAA 7 cut(s) 11, 411, 539, 681, 698, 1007, 1042
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 3 cut(s) 291, 784, 844
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 3 cut(s) 291, 784, 844
TspDTI ATGAA 2 cut(s) 633, 883
TspGWI ACGGA 2 cut(s) 279, 945
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 316
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 2 cut(s) 529, 866
XhoI CTCGAG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 2 cut(s) 635, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.