Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001208

Physical Location & Seq

Genomic Coordinates Reverse (-)

1871866 .. 1876934

Gene Structure 5069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGCGAGTCGAGTGACTCAGTTTCTATTGACATTGATGTGGTACCTTTAGGAGGGAAGGAATGTGTGGTGAAAACAAGCAAAGGTTCAGTGTCTGTGTTTGTGTGTGGGGATCAAGGAAAGCCTGCTTTGATAACGTACCCAGATGTTGCTCTTAATTGTCTCTTCTTTTGCTCAGATGCAGCTTCTTTGCTGCTTCATAACTTTTGCATATACCATATCGATGCGCCTGGACATGAGTTGGGAGCTGATGTGATATCTTCAGATGTTCCTCTTCTTAGTGTGGATGACCTTGCAGACCAGCTTGTTGAAGTGCTTGATTTCTTTGGGTTGAAAGAGGTCCTGTGCTTGGGTGTGACAGCTGGTGCTTATATTCTCACACTGTTTGCAATGAAGTATAAAGAACGGGTGCTTGGGTTAATACTTGTGTCCCCTATCTGCAAAGCACCTTCATGGACTGAATGGCTCTACAACAAGGTATTGCTGAACTTGTTATACTTTTATGGTATGTGCGGTGTATTAAAGGAATGCCTTCTCCAGCGATACTTCAGTAAGGAGCTTAGGTGTGGTACACAAGGTGCAGAATCAGATGTAATACAAGCTTGCCGAAGGTTATTGGATGAAAGACAAAGTTTGAACGTGATGCGATTTCTTCAAGCAATAAATGAGAGGCATGACCTTACAGAGAGCTTGAAGAGTTTGCAGTGCAAGACTCTTATTTTTGTGGGTGAAAATAGTCCATTCCATGCTGAATCTTTGTATATGAATGCAAGAATGAACAGTAAAACTTGTGCTCTTGTTGAGGTTCAGTCATGTGGCTCGTTGGTAACAGAAGAGCTCCCAAACGCCATGCTTGTTCCAATCGAGTTCTTCCTCATGGGATTTGGCTACTATAGGCAACCACATTTTGCTTCCTCATCAAGTAATGACTCGAACCCTACAAGCCCCTCAAGCCGTTTGTCCATAGCACCAGAACTTTTTTCTCCTGAGGGTCTGGGTATCAAGCTCAAACCCATCAAAACAAGGGTGAATACTAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndr

Protein Analysis

348

Amino Acids

38.23

Weight (kDa)

5.35

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	23 - 299	1.9e-98	Ndr family
Hydrolase_4	PF12146	59 - 245	2.7e-06	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	62 - 246	2.7e-08	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	62 - 278	1.6e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19620 AT2G19620 AT2G19620 AT5G56750 AT5G56750
fragaria_vesca	FvH4_1g07090 FvH4_1g07090 FvH4_6g03401 FvH4_6g03401
malus_domestica	MD02G1075000.v1.1 MD04G1221300.v1.1 MD15G1204100.v1.1
prunus_persica	Prupe.6G340500_v2.0.a1 Prupe.6G340500_v2.0.a1 Prupe.7G213100_v2.0.a1 Prupe.7G213100_v2.0.a1 Prupe.7G213100_v2.0.a1 Prupe.7G213100_v2.0.a1
pyrus_communis	pycom02g05910 pycom04g19570 pycom15g18090
rosa_chinensis	RchiOBHm_Chr2g0092981 RchiOBHm_Chr2g0101961 RchiOBHm_Chr3g0451891
rosa_laevigata	RLG00000016355 RLG00000017119 RLG00000025640
rosa_multiflora	Rmu_sc0000965.1_g000019 Rmu_sc0002901.1_g000006 Rmu_sc0006510.1_g000007 Rmu_sc0012270.1_g000003
rosa_roxburghii	Rroxscaffold_164G00436230 Rroxscaffold_164G00436240 Rroxscaffold_2G00148650 Rroxscaffold_6G00429060
rosa_rugosa	Rorug02G0030700 Rorug02G0030800 Rorug02G0030900 Rorug02G0031000 Rorug02G0103300 Rorug02G0636800
rosa_samantha	Rh2AG076900 Rh2AG151500 Rh2BG078300 Rh2BG156900 Rh2CG080500 Rh2CG156800 Rh2DG075600 Rh2DG157000 Rh3AG038700 Rh3BG040000 Rh3CG038500 Rh3DG039300
rosa_wichuraiana	Rw2G006930 Rw2G011820 Rw3G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	43
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	246, 532
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	3 cut(s)	45, 140, 571
AfiI	CCNNNNNNNGG	2 cut(s)	53, 349
AgsI	TTSAA	5 cut(s)	311, 334, 637, 656, 694
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	9 cut(s)	185, 248, 304, 362, 559, 602, 690, 838, 1006
AluI	AGCT	9 cut(s)	185, 248, 304, 362, 559, 602, 690, 838, 1006
Alw21I	GWGCWC	2 cut(s)	796, 840
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	182, 193
Asp700I	GAANNNNTTC	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	82, 740, 1039
AvaII	GGWCC	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	987
BaeI	ACNNNNGTAYC	2 cut(s)	535, 568
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	796, 840
BbvI	GCAGC	2 cut(s)	180, 194
BccI	CCATC	1 cut(s)	1022
BceAI	ACGGC	1 cut(s)	939
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	892
BisI	GCNGC	2 cut(s)	183, 194
BlsI	GCNGC	2 cut(s)	184, 195
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	169, 214, 633
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	934
Bsa29I	ATCGAT	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	237, 267, 548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 349
Bse21I	CCTNAGG	1 cut(s)	987
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	222
BseGI	GGATG	2 cut(s)	292, 625
BseLI	CCNNNNNNNGG	2 cut(s)	53, 349
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	33, 189, 978
BseXI	GCAGC	2 cut(s)	180, 194
BsgI	GTGCAG	1 cut(s)	600
BshNI	GGYRCC	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	796, 840
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	53, 349
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	2 cut(s)	533, 772
Bsp1286I	GDGCHC	2 cut(s)	796, 840
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	513
BspCNI	CTCAG	3 cut(s)	32, 188, 979
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	396
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	384, 782
Bst6I	CTCTTC	4 cut(s)	170, 279, 689, 828
BstC8I	GCNNGC	2 cut(s)	126, 604
BstDEI	CTNAG	6 cut(s)	19, 175, 278, 560, 987, 1035
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	292, 625
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	951
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	892
BstV1I	GCAGC	2 cut(s)	180, 194
Bsu15I	ATCGAT	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	987
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	292, 625
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	3 cut(s)	96, 380, 710
Cac8I	GCNNGC	2 cut(s)	126, 604
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	340
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	44, 139, 570
CviAII	CATG	7 cut(s)	236, 453, 674, 746, 813, 850, 877
CviQI	GTAC	3 cut(s)	44, 139, 570
DdeI	CTNAG	6 cut(s)	19, 175, 278, 560, 987, 1035
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraIII	CACNNNGTG	1 cut(s)	578
Eam1104I	CTCTTC	4 cut(s)	170, 279, 689, 828
EarI	CTCTTC	4 cut(s)	170, 279, 689, 828
Ecl136II	GAGCTC	1 cut(s)	838
Eco24I	GRGCYC	1 cut(s)	840
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	2 cut(s)	246, 532
Eco81I	CCTNAGG	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	838
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	840
FaeI	CATG	7 cut(s)	239, 456, 677, 749, 816, 853, 880
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	7 cut(s)	235, 452, 673, 745, 812, 849, 876
Fnu4HI	GCNGC	2 cut(s)	183, 194
FokI	GGATG	2 cut(s)	299, 632
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	2 cut(s)	183, 194
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	2 cut(s)	183, 194
GsuI	CTGGAG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	7 cut(s)	239, 456, 677, 749, 816, 853, 880
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	6 cut(s)	8, 17, 584, 712, 752, 929
HphI	GGTGA	3 cut(s)	82, 740, 1039
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	3 cut(s)	178, 265, 589
Hpy188III	TCNNGA	1 cut(s)	986
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	4 cut(s)	52, 459, 542, 603
HpyCH4III	ACNGT	2 cut(s)	384, 782
HpyCH4IV	ACGT	2 cut(s)	137, 639
HpyCH4V	TGCA	9 cut(s)	182, 210, 296, 389, 441, 581, 703, 708, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	951
HpyF3I	CTNAG	6 cut(s)	19, 175, 278, 560, 987, 1035
HpySE526I	ACGT	2 cut(s)	137, 639
Hsp92II	CATG	7 cut(s)	239, 456, 677, 749, 816, 853, 880
HspAI	GCGC	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	112
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	3 cut(s)	245, 556, 843
Lsp1109I	GCAGC	2 cut(s)	180, 194
LweI	GCATC	3 cut(s)	169, 214, 633
MaeII	ACGT	2 cut(s)	137, 639
MaeIII	GTNAC	3 cut(s)	14, 355, 826
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	7 cut(s)	157, 252, 266, 644, 706, 845, 862
MhlI	GDGCHC	2 cut(s)	796, 840
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	4 cut(s)	11, 17, 706, 923
MnlI	CCTC	9 cut(s)	47, 282, 331, 663, 796, 884, 925, 958, 982
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	156, 419, 521
MslI	CAYNNNNRTG	3 cut(s)	38, 222, 451
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	2 cut(s)	533, 772
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	951
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	7 cut(s)	239, 456, 677, 749, 816, 853, 880
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	14, 355
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	2 cut(s)	533, 772
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	584, 752
PkrI	GCNGC	2 cut(s)	184, 195
PleI	GAGTC	4 cut(s)	11, 16, 706, 923
PpsI	GAGTC	4 cut(s)	11, 16, 706, 923
PpuMI	RGGWCCY	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	340
PspPPI	RGGWCCY	1 cut(s)	340
PsrI	GAACNNNNNNTAC	2 cut(s)	479, 511
PstNI	CAGNNNCTG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	45, 140, 571
RsaNI	GTAC	3 cut(s)	44, 139, 570
RseI	CAYNNNNRTG	3 cut(s)	38, 222, 451
SacI	GAGCTC	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	156, 419, 521
SatI	GCNGC	2 cut(s)	183, 194
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	4 cut(s)	11, 17, 706, 923
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	796, 840
SfaNI	GCATC	3 cut(s)	169, 214, 633
SfcI	CTRYAG	1 cut(s)	892
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	3 cut(s)	38, 222, 451
SmlI	CTYRAG	1 cut(s)	949
SmoI	CTYRAG	1 cut(s)	949
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	840
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	384, 782
TaiI	ACGT	2 cut(s)	140, 642
TaqI	TCGA	4 cut(s)	11, 222, 864, 932
TasI	AATT	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	584, 752
Tru1I	TTAA	3 cut(s)	156, 419, 521
Tru9I	TTAA	3 cut(s)	156, 419, 521
TscAI	CASTG	3 cut(s)	96, 387, 710
TseFI	GTSAC	2 cut(s)	14, 355
TseI	GCWGC	2 cut(s)	182, 193
Tsp45I	GTSAC	2 cut(s)	14, 355
TspDTI	ATGAA	6 cut(s)	188, 407, 441, 636, 779, 791
TspRI	CASTG	3 cut(s)	96, 387, 710
VpaK11BI	GGWCC	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.