Rh2AG151500

Pollen-specific protein SF21-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001208
Physical Location & Seq
Reverse (-)
13804347 .. 13805357
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG151500.1

Sequence Viewer

Length: 1011 bp
ATGGAGAAGATCTATCTCGGCGGAAAGGAACATTTTATTCGAACTGGCTGTGGTTCTGTGTCCGTTATAGTCTGTGGGGACCAAGATAAGCCTGCACTTATCACGTATCCTGATTTAGCTCTAAATCATATGTCTTGTTTCCAAGGGTTATTCTCTTGTCCTGAAGCAGCTTCTTTCCTGCTCCACAACTTCTGCATATACCATATTAGTCCTCCTGGTCATGAGTTAGGAGCTGCTTCGATTAGTCTTGATGATCCTGTACCTTCTGCTGACGACTTGGCAGATCAGATCCTTGAAGTTCTAAACTTTTTCGGGCTTGGTGCAGTTATGTGCATGGGAGTGACAGCGGGTGCTTATATCCTTTCCTTATTTGCTACGAAATATAGGAAACGCGTTCTTGGTTTGATACTTGTATCTCCATTATGCAGAGCACCATCTTGGACCGAATGGTTTTATAATAAGGTGATATCAAATATGCTATATTTCTATGGGATGTGTGGTTTGCTAAAGGAGCGTTTGCTTCAGCGTTACTTTAGTAAGGAGGTTCGTGGTAGTGCTGAAGTTCCGGAGTCGGATATAGTTCAAGCATGCAGAAAGTTGTTGGAAGAGAGGCAGAGCTCAAATGTTTGGAGATTTCTTAAAGCAATTAATCGGAGACCTGACATAACTGAAGGCTTGAAGTCACTAAGGTGTCGCACTCTCATTTTTGTTGGGGATAGCTCTCCTTTCCACCGTGAGGCTCTCCACATGATCTCAAAGTTGGATAGAAGAAATAGTGCCTTAGTAGAGGTCCAGGCTTGTGGATCGATGGTGACAGAGGAGCAGCCACATGCAATGTTGATACCCATGGAGTACTTGTTCATGGGGTATGGTTTTTACAGACCGTGTCATTTCAGAGAGAGCCCTAGGAGCCCACTCATCCCAACTTGCATCTCCCCGGAGCTTCTCTCCCAGGAAAGCATGGGTCTGAAGCTAAAACCAATCAAGACCCGTGTGTCGCTCGGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

336

Amino Acids

37.75

Weight (kDa)

8.18

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 10 - 294 3.5e-113 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 456, 1009
AasI GACNNNNNNGTC 1 cut(s) 994
AccII CGCG 1 cut(s) 393
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 2 cut(s) 21, 347
AclWI GGATC 3 cut(s) 248, 283, 811
AcuI CTGAAG 5 cut(s) 183, 506, 579, 690, 989
AfaI GTAC 2 cut(s) 261, 854
AfiI CCNNNNNNNGG 1 cut(s) 736
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 3 cut(s) 296, 584, 679
AjnI CCWGG 3 cut(s) 214, 792, 951
AleI CACNNNNGTG 1 cut(s) 688
AloI GAACNNNNNNTCC 2 cut(s) 842, 874
AluBI AGCT 7 cut(s) 119, 170, 233, 618, 720, 943, 973
AluI AGCT 7 cut(s) 119, 170, 233, 618, 720, 943, 973
Alw21I GWGCWC 2 cut(s) 433, 620
Alw26I GTCTC 1 cut(s) 649
AlwI GGATC 3 cut(s) 248, 283, 811
Aor13HI TCCGGA 1 cut(s) 565
ApeKI GCWGC 3 cut(s) 167, 233, 823
AseI ATTAAT 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 79, 441, 790
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 2 cut(s) 475, 823
AsuII TTCGAA 1 cut(s) 40
AvaII GGWCC 3 cut(s) 79, 441, 790
AvrII CCTAGG 1 cut(s) 905
BanII GRGCYC 3 cut(s) 620, 905, 914
Bbv12I GWGCWC 2 cut(s) 433, 620
BbvI GCAGC 3 cut(s) 179, 220, 835
BccI CCATC 2 cut(s) 442, 802
BciT130I CCWGG 3 cut(s) 216, 794, 953
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 1 cut(s) 906
BfuI GTATCC 1 cut(s) 117
BglII AGATCT 1 cut(s) 9
BisI GCNGC 3 cut(s) 168, 234, 824
BlnI CCTAGG 1 cut(s) 905
BlsI GCNGC 3 cut(s) 169, 235, 825
BmcAI AGTACT 1 cut(s) 854
Bme1390I CCNGG 4 cut(s) 216, 794, 938, 953
Bme18I GGWCC 3 cut(s) 79, 441, 790
BmgT120I GGNCC 3 cut(s) 79, 441, 790
BmiI GGNNCC 2 cut(s) 80, 911
BmrFI CCNGG 4 cut(s) 216, 794, 938, 953
BmsI GCATC 1 cut(s) 939
BplI GAGNNNNNCTC 2 cut(s) 932, 964
Bpu14I TTCGAA 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 806
BsaAI YACGTR 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 5 cut(s) 142, 846, 905, 936, 951
BsaWI WCCGGW 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 840
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 3 cut(s) 216, 794, 953
BseCI ATCGAT 1 cut(s) 806
BseDI CCNNGG 5 cut(s) 142, 846, 905, 936, 951
BseGI GGATG 2 cut(s) 498, 918
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMI GCAATG 1 cut(s) 840
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 3 cut(s) 179, 220, 835
BsgI GTGCAG 2 cut(s) 78, 342
Bsh1236I CGCG 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 806
BsiHKAI GWGCWC 2 cut(s) 433, 620
BsiSI CCGG 2 cut(s) 566, 938
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 433, 620, 905, 914
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 6 cut(s) 9, 253, 283, 288, 750, 803
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 2 cut(s) 21, 347
BspDI ATCGAT 1 cut(s) 806
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 393
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 80, 911
BspPI GGATC 3 cut(s) 248, 283, 811
BspT104I TTCGAA 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 840
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 5 cut(s) 142, 846, 905, 936, 951
BssMI GATC 6 cut(s) 9, 253, 283, 288, 750, 803
BssT1I CCWWGG 3 cut(s) 142, 846, 905
Bst2UI CCWGG 3 cut(s) 216, 794, 953
Bst4CI ACNGT 2 cut(s) 734, 885
Bst6I CTCTTC 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 93, 589
BstDEI CTNAG 2 cut(s) 686, 781
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 2 cut(s) 498, 918
BstFNI CGCG 1 cut(s) 393
BstKTI GATC 6 cut(s) 12, 256, 286, 291, 753, 806
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 6 cut(s) 9, 253, 283, 288, 750, 803
BstMWI GCNNNNNNNGC 2 cut(s) 511, 909
BstNI CCWGG 3 cut(s) 216, 794, 953
BstNSI RCATGY 2 cut(s) 591, 833
BstSCI CCNGG 4 cut(s) 214, 792, 936, 951
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 3 cut(s) 179, 220, 835
BstX2I RGATCY 2 cut(s) 9, 288
BstXI CCANNNNNNTGG 1 cut(s) 800
BstYI RGATCY 2 cut(s) 9, 288
Bsu15I ATCGAT 1 cut(s) 806
BsuI GTATCC 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 806
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 2 cut(s) 498, 918
Cac8I GCNNGC 2 cut(s) 93, 589
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 79, 441, 790
ClaI ATCGAT 1 cut(s) 806
Csp6I GTAC 2 cut(s) 260, 853
CviAII CATG 8 cut(s) 221, 334, 588, 748, 830, 847, 862, 961
CviQI GTAC 2 cut(s) 260, 853
DdeI CTNAG 2 cut(s) 686, 781
DpnI GATC 6 cut(s) 11, 255, 285, 290, 752, 805
DpnII GATC 6 cut(s) 9, 253, 283, 288, 750, 803
DrdI GACNNNNNNGTC 1 cut(s) 994
DseDI GACNNNNNNGTC 1 cut(s) 994
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 618
Eco130I CCWWGG 3 cut(s) 142, 846, 905
Eco24I GRGCYC 3 cut(s) 620, 905, 914
Eco31I GGTCTC 1 cut(s) 649
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 3 cut(s) 79, 441, 790
Eco53kI GAGCTC 1 cut(s) 618
Eco57I CTGAAG 5 cut(s) 183, 506, 579, 690, 989
EcoICRI GAGCTC 1 cut(s) 618
EcoRII CCWGG 3 cut(s) 214, 792, 951
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 3 cut(s) 142, 846, 905
EcoT38I GRGCYC 3 cut(s) 620, 905, 914
ErhI CCWWGG 3 cut(s) 142, 846, 905
FaeI CATG 8 cut(s) 224, 337, 591, 751, 833, 850, 865, 964
FaqI GGGAC 1 cut(s) 92
FatI CATG 8 cut(s) 220, 333, 587, 747, 829, 846, 861, 960
FauI CCCGC 1 cut(s) 340
FauNDI CATATG 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 168, 234, 824
FokI GGATG 2 cut(s) 505, 905
FriOI GRGCYC 3 cut(s) 620, 905, 914
Fsp4HI GCNGC 3 cut(s) 168, 234, 824
FspBI CTAG 1 cut(s) 906
GluI GCNGC 3 cut(s) 168, 234, 824
HapII CCGG 2 cut(s) 566, 938
Hin1II CATG 8 cut(s) 224, 337, 591, 751, 833, 850, 865, 964
HinfI GANTC 1 cut(s) 569
HpaII CCGG 2 cut(s) 566, 938
HphI GGTGA 2 cut(s) 475, 823
Hpy188I TCNGA 6 cut(s) 288, 574, 654, 896, 969, 1004
Hpy188III TCNNGA 6 cut(s) 110, 161, 221, 248, 566, 985
HpyAV CCTTC 2 cut(s) 273, 665
HpyCH4III ACNGT 2 cut(s) 734, 885
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 8 cut(s) 95, 195, 323, 333, 426, 591, 833, 930
HpyF10VI GCNNNNNNNGC 2 cut(s) 511, 909
HpyF3I CTNAG 2 cut(s) 686, 781
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 8 cut(s) 224, 337, 591, 751, 833, 850, 865, 964
Kpn2I TCCGGA 1 cut(s) 565
Kzo9I GATC 6 cut(s) 9, 253, 283, 288, 750, 803
LmnI GCTCC 6 cut(s) 186, 230, 511, 820, 909, 940
Lsp1109I GCAGC 3 cut(s) 179, 220, 835
LweI GCATC 1 cut(s) 939
MaeI CTAG 1 cut(s) 906
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 4 cut(s) 340, 527, 681, 811
MalI GATC 6 cut(s) 11, 255, 285, 290, 752, 805
MboI GATC 6 cut(s) 9, 253, 283, 288, 750, 803
MboII GAAGA 3 cut(s) 19, 617, 780
MflI RGATCY 2 cut(s) 9, 288
MhlI GDGCHC 4 cut(s) 433, 620, 905, 914
MluCI AATT 1 cut(s) 645
MluI ACGCGT 1 cut(s) 391
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 3 cut(s) 552, 582, 741
MnlI CCTC 6 cut(s) 222, 535, 603, 730, 781, 811
MroI TCCGGA 1 cut(s) 565
MseI TTAA 2 cut(s) 639, 648
MslI CAYNNNNRTG 2 cut(s) 338, 688
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 566, 938
MspR9I CCNGG 4 cut(s) 216, 794, 938, 953
MvaI CCWGG 3 cut(s) 216, 794, 953
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 511, 909
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 1 cut(s) 846
NdeI CATATG 1 cut(s) 129
NdeII GATC 6 cut(s) 9, 253, 283, 288, 750, 803
NlaIII CATG 8 cut(s) 224, 337, 591, 751, 833, 850, 865, 964
NlaIV GGNNCC 2 cut(s) 80, 911
NmuCI GTSAC 3 cut(s) 340, 681, 811
NspI RCATGY 2 cut(s) 591, 833
NspV TTCGAA 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 688
PaeI GCATGC 1 cut(s) 591
PagI TCATGA 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 885
PkrI GCNGC 3 cut(s) 169, 235, 825
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 648
PsiI TTATAA 2 cut(s) 456, 1009
Psp124BI GAGCTC 1 cut(s) 620
Psp6I CCWGG 3 cut(s) 214, 792, 951
PspGI CCWGG 3 cut(s) 214, 792, 951
PspN4I GGNNCC 2 cut(s) 80, 911
PspPI GGNCC 3 cut(s) 79, 441, 790
PsuI RGATCY 2 cut(s) 9, 288
PsyI GACNNNGTC 1 cut(s) 885
RsaI GTAC 2 cut(s) 261, 854
RsaNI GTAC 2 cut(s) 260, 853
RseI CAYNNNNRTG 2 cut(s) 338, 688
SacI GAGCTC 1 cut(s) 620
SaqAI TTAA 2 cut(s) 639, 648
SatI GCNGC 3 cut(s) 168, 234, 824
Sau3AI GATC 6 cut(s) 9, 253, 283, 288, 750, 803
Sau96I GGNCC 3 cut(s) 79, 441, 790
ScaI AGTACT 1 cut(s) 854
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 4 cut(s) 216, 794, 938, 953
SduI GDGCHC 4 cut(s) 433, 620, 905, 914
SfaNI GCATC 1 cut(s) 939
SfuI TTCGAA 1 cut(s) 40
SinI GGWCC 3 cut(s) 79, 441, 790
SmiMI CAYNNNNRTG 2 cut(s) 338, 688
SphI GCATGC 1 cut(s) 591
Sse9I AATT 1 cut(s) 645
SsiI CCGC 2 cut(s) 21, 347
SspMI CTAG 1 cut(s) 906
SstI GAGCTC 1 cut(s) 620
StyD4I CCNGG 4 cut(s) 214, 792, 936, 951
StyI CCWWGG 3 cut(s) 142, 846, 905
TaaI ACNGT 2 cut(s) 734, 885
TaiI ACGT 1 cut(s) 107
TaqI TCGA 3 cut(s) 40, 239, 806
TaqII GACCGA 1 cut(s) 458
TasI AATT 1 cut(s) 645
TatI WGTACW 1 cut(s) 852
Tru1I TTAA 2 cut(s) 639, 648
Tru9I TTAA 2 cut(s) 639, 648
TseFI GTSAC 3 cut(s) 340, 681, 811
TseI GCWGC 3 cut(s) 167, 233, 823
Tsp45I GTSAC 3 cut(s) 340, 681, 811
TspDTI ATGAA 1 cut(s) 850
TspGWI ACGGA 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 885
VpaK11BI GGWCC 3 cut(s) 79, 441, 790
VspI ATTAAT 1 cut(s) 648
XceI RCATGY 2 cut(s) 591, 833
XmaJI CCTAGG 1 cut(s) 905
XspI CTAG 1 cut(s) 906
ZrmI AGTACT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.