Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001208

Physical Location & Seq

Genomic Coordinates Forward (+)

30267235 .. 30269315

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1221300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCCCCTTGCTTAGTGTGGATGACCTTGCAGACCAGGTGGTCGAAGTGCTCGATTTCTTTGGGTAAGTTGAAAGAAGTGCTGTGCTTGGGTGTAACAGCTGGTGCTTATATCCTTACACTCTTTGCAATGAAGTATCAAGAACGGGTGCTTGGGTTAATTCTTGTGTCTCCTATCTGCAAAGTACCTTCATGGACTGAATGGATTTACAACAAGGTATTGTTGAACTTGCTATACTTTTATGGCATGTGTGATATAGTAAAGGAATGCCTACTGCAGCGTTACTTCAGTAAGGAGCTTAGGTCTGGCATACACGGTGGAGAGTCAGATGTTATAGAAGCTTGCCAAAGGTTATTGGATGAAAGACAAAGTTCGAATGTCTTGCGGTTCCTTCAAGCAACTAATGAGAGGCACGACCTTACCCAGGGCTTGAAGAATTTGCAGTGTAAGACTCTTATTTTTGTGGGTGAAAGAAGTCCATTCCATGCTGAATCCGTCTATATGAATGCCAAAATGAACCGAAGAAGTTGTGCTCTTGTTGAGGTTCAGGCATGCGGCTCGCTGGTAACAGAAGAGCACCCATACGCAATGATAACTCCGATTGAACTCTTCCTCAGGGGTTTTGGGTACTACAGACAACCACATTTTACTTCCTCTTCAAGCAACGACTCGAATCCCACCAGCCCCTCAAAAATCAATTCATGCATAGCGCCCGAACTTCTTTCTCCTGAGAGCCTGGGAATCAAGCTCAAACCGATCAAAACACGGGTAGCCATCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndr

Protein Analysis

262

Amino Acids

29.55

Weight (kDa)

8.72

Isoelectric Point (pI)

66.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndr	PF03096	23 - 212	3.9e-65	Ndr family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19620 AT2G19620 AT2G19620 AT5G56750 AT5G56750
fragaria_vesca	FvH4_1g07090 FvH4_1g07090 FvH4_6g03401 FvH4_6g03401
malus_domestica	MD02G1075000.v1.1 MD04G1221300.v1.1 MD15G1204100.v1.1
prunus_persica	Prupe.6G340500_v2.0.a1 Prupe.6G340500_v2.0.a1 Prupe.7G213100_v2.0.a1 Prupe.7G213100_v2.0.a1 Prupe.7G213100_v2.0.a1 Prupe.7G213100_v2.0.a1
pyrus_communis	pycom02g05910 pycom04g19570 pycom15g18090
rosa_chinensis	RchiOBHm_Chr2g0092981 RchiOBHm_Chr2g0101961 RchiOBHm_Chr3g0451891
rosa_laevigata	RLG00000016355 RLG00000017119 RLG00000025640
rosa_multiflora	Rmu_sc0000965.1_g000019 Rmu_sc0002901.1_g000006 Rmu_sc0006510.1_g000007 Rmu_sc0012270.1_g000003
rosa_roxburghii	Rroxscaffold_164G00436230 Rroxscaffold_164G00436240 Rroxscaffold_2G00148650 Rroxscaffold_6G00429060
rosa_rugosa	Rorug02G0030700 Rorug02G0030800 Rorug02G0030900 Rorug02G0031000 Rorug02G0103300 Rorug02G0636800
rosa_samantha	Rh2AG076900 Rh2AG151500 Rh2BG078300 Rh2BG156900 Rh2CG080500 Rh2CG156800 Rh2DG075600 Rh2DG157000 Rh3AG038700 Rh3BG040000 Rh3CG038500 Rh3DG039300
rosa_wichuraiana	Rw2G006930 Rw2G011820 Rw3G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AciI	CCGC	2 cut(s)	385, 555
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	2 cut(s)	186, 629
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	6 cut(s)	73, 226, 395, 433, 605, 660
AjnI	CCWGG	3 cut(s)	35, 423, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	101, 298, 341, 748
AluI	AGCT	4 cut(s)	101, 298, 341, 748
Alw21I	GWGCWC	3 cut(s)	53, 535, 579
Alw26I	GTCTC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	712
AsuHPI	GGTGA	1 cut(s)	479
AsuII	TTCGAA	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	614
Bbv12I	GWGCWC	3 cut(s)	53, 535, 579
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	782
BcgI	CGANNNNNNTGC	4 cut(s)	364, 398, 540, 574
BciT130I	CCWGG	3 cut(s)	37, 425, 737
BcoDI	GTCTC	1 cut(s)	174
BfmI	CTRYAG	2 cut(s)	275, 631
BfoI	RGCGCY	1 cut(s)	713
BisI	GCNGC	2 cut(s)	278, 556
BlsI	GCNGC	2 cut(s)	279, 557
Bme1390I	CCNGG	3 cut(s)	37, 425, 737
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	3 cut(s)	37, 425, 737
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu14I	TTCGAA	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	423, 424, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	614
Bse3DI	GCAATG	2 cut(s)	135, 594
BseBI	CCWGG	3 cut(s)	37, 425, 737
BseDI	CCNNGG	3 cut(s)	423, 424, 736
BseGI	GGATG	2 cut(s)	27, 364
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	2 cut(s)	135, 594
BseMII	CTCAG	2 cut(s)	628, 720
BseXI	GCAGC	1 cut(s)	289
BsiHKAI	GWGCWC	3 cut(s)	53, 535, 579
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	2 cut(s)	272, 511
Bsp119I	TTCGAA	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	53, 535, 579
Bsp143I	GATC	1 cut(s)	756
BspACI	CCGC	2 cut(s)	385, 555
BspCNI	CTCAG	2 cut(s)	627, 721
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	135, 594
BssECI	CCNNGG	3 cut(s)	423, 424, 736
BssMI	GATC	1 cut(s)	756
Bst2UI	CCWGG	3 cut(s)	37, 425, 737
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	3 cut(s)	567, 614, 661
BstBI	TTCGAA	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	343, 553, 560
BstDEI	CTNAG	4 cut(s)	13, 299, 614, 729
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	27, 364
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	1 cut(s)	759
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	756
BstNI	CCWGG	3 cut(s)	37, 425, 737
BstNSI	RCATGY	2 cut(s)	250, 555
BstSCI	CCNGG	3 cut(s)	35, 423, 735
BstSFI	CTRYAG	2 cut(s)	275, 631
BstV1I	GCAGC	1 cut(s)	289
Bsu36I	CCTNAGG	1 cut(s)	614
BtsCI	GGATG	2 cut(s)	27, 364
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	3 cut(s)	343, 553, 560
CfoI	GCGC	1 cut(s)	712
CsiI	ACCWGGT	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	185, 628
CviAII	CATG	5 cut(s)	192, 247, 485, 552, 702
CviJI	RGCY	9 cut(s)	101, 298, 341, 429, 558, 684, 735, 748, 773
CviKI_1	RGCY	9 cut(s)	101, 298, 341, 429, 558, 684, 735, 748, 773
CviQI	GTAC	2 cut(s)	185, 628
DdeI	CTNAG	4 cut(s)	13, 299, 614, 729
DpnI	GATC	1 cut(s)	758
DpnII	GATC	1 cut(s)	756
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	3 cut(s)	567, 614, 661
EarI	CTCTTC	3 cut(s)	567, 614, 661
Eco57I	CTGAAG	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	614
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	35, 423, 735
EcoT22I	ATGCAT	1 cut(s)	707
FaeI	CATG	5 cut(s)	195, 250, 488, 555, 705
FatI	CATG	5 cut(s)	191, 246, 484, 551, 701
Fnu4HI	GCNGC	2 cut(s)	278, 556
FokI	GGATG	2 cut(s)	34, 371
Fsp4HI	GCNGC	2 cut(s)	278, 556
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	2 cut(s)	278, 556
HaeII	RGCGCY	1 cut(s)	713
HhaI	GCGC	1 cut(s)	712
Hin1II	CATG	5 cut(s)	195, 250, 488, 555, 705
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	6 cut(s)	323, 451, 491, 668, 673, 741
HphI	GGTGA	1 cut(s)	479
Hpy188I	TCNGA	2 cut(s)	328, 600
Hpy188III	TCNNGA	2 cut(s)	140, 728
HpyAV	CCTTC	2 cut(s)	198, 401
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	6 cut(s)	31, 128, 180, 277, 442, 705
HpyF3I	CTNAG	4 cut(s)	13, 299, 614, 729
Hsp92II	CATG	5 cut(s)	195, 250, 488, 555, 705
HspAI	GCGC	1 cut(s)	710
Kzo9I	GATC	1 cut(s)	756
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	289
MabI	ACCWGGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	94, 281, 565
MalI	GATC	1 cut(s)	758
MboI	GATC	1 cut(s)	756
MboII	GAAGA	5 cut(s)	445, 534, 584, 601, 648
MhlI	GDGCHC	3 cut(s)	53, 535, 579
MluCI	AATT	3 cut(s)	159, 436, 697
MlyI	GAGTC	3 cut(s)	332, 445, 662
MnlI	CCTC	5 cut(s)	402, 535, 623, 664, 697
Mph1103I	ATGCAT	1 cut(s)	707
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	3 cut(s)	37, 425, 737
Mva1269I	GAATGC	2 cut(s)	272, 511
MvaI	CCWGG	3 cut(s)	37, 425, 737
NdeII	GATC	1 cut(s)	756
NlaIII	CATG	5 cut(s)	195, 250, 488, 555, 705
NlaIV	GGNNCC	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	707
NspI	RCATGY	2 cut(s)	250, 555
NspV	TTCGAA	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	555
PasI	CCCWGGG	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	2 cut(s)	272, 511
PfeI	GAWTC	3 cut(s)	491, 673, 741
PkrI	GCNGC	2 cut(s)	279, 557
PleI	GAGTC	3 cut(s)	331, 445, 662
PpsI	GAGTC	3 cut(s)	331, 445, 662
Psp6I	CCWGG	3 cut(s)	35, 423, 735
PspGI	CCWGG	3 cut(s)	35, 423, 735
PspN4I	GGNNCC	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PstI	CTGCAG	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	186, 629
RsaNI	GTAC	2 cut(s)	185, 628
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	278, 556
Sau3AI	GATC	1 cut(s)	756
SchI	GAGTC	3 cut(s)	332, 445, 662
ScrFI	CCNGG	3 cut(s)	37, 425, 737
SduI	GDGCHC	3 cut(s)	53, 535, 579
SexAI	ACCWGGT	1 cut(s)	35
SfcI	CTRYAG	2 cut(s)	275, 631
SfuI	TTCGAA	1 cut(s)	374
SphI	GCATGC	1 cut(s)	555
Sse9I	AATT	3 cut(s)	159, 436, 697
SsiI	CCGC	2 cut(s)	385, 555
StyD4I	CCNGG	3 cut(s)	35, 423, 735
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	5 cut(s)	44, 53, 374, 671, 777
TasI	AATT	3 cut(s)	159, 436, 697
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	3 cut(s)	491, 673, 741
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	6 cut(s)	146, 180, 375, 518, 530, 690
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	449
XagI	CCTNNNNNAGG	1 cut(s)	422
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	2 cut(s)	250, 555
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.