Prupe.6G340500_v2.0.a1

Ndr family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001208
Physical Location & Seq
Forward (+)
29432637 .. 29436066
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G340500.2

Sequence Viewer

Length: 1062 bp
ATGGGGGATTCGAGTGACTCAGTCTCCATTGACATTGATATGATACCTTTAGGAGGGAAGGAATGTGTGGTGAACACAAGCAAAGGTTCAGTCTCTGTGTTTGTTTGTGGGGATCAAGGAAAGCCTGCTTTGATAACATACCCCGACGTTGCTCTCAATTACATGTCCTGTTTCCAAGGCCTCCTCTTTTGCTCAGATGCTGCTTCTTTGCTGCTTCACAACTTTTGCATTTATCACATTGATGCACCCGGCCATGAGTTGGGAGCTGATGTGATTTCTTCAGATGTCCCCTTGCTTAGCGTGGATGACCTTGCAGACCAGGTGGTCGAAGTGCTTGATTTCTTTGGGTTGAAAGAAGTCATGTGCTTGGGTGTAACAGCTGGTGCTTATATCCTTACACTCTTTGCAATGAAGTATAAAGAACGAGTGCTTGGGTTAGTACTCGTGTCTCCAATCTGCAAAGTACCTTCGTGGACTGAATGGCTTTACAACAAGGTATTGTTGAACTTGCTATACTTCTATGGTATGTGTGATGTAGTGAAGGAATGCCTTCTGCAGCGTTACTTCAGTGAGGAGCTTAGGTCTGCCATACATGCTGCAGAATCAGATATTATACAAGCTTGCCGAAGGTTACTGGATGAAAGGCAAAGTTCGAATGTCATGCGATTCCTTCAAGCAATTAATGAGAGGCATGACCTTACAGAGGGCTTGAAGAATTTGCAGTGTAAGACACTTATTTTTGTAGGTGACAGTAGTCCATTCCATGCTGAATCTGTGTATATGAATGCCAAAATGAACAGAAGAAGCTGTGCTCTTGTTGAGGTTCAGGCATGTGGCTCACTGGTAACAGAAGAGCACCCATACGCCATGATAACTCCGATTGAGTTCTTCCTCAGGGGTTTTGGCTACTACAGACAACCACATTTTACTTCCTCATCAAGTAATGACTCCAATCCCACCAGCCCATCGAACCAATCATGCATAGCGCCGGAACTTCTTTCTCCTGAGAGTCTAGGAATCAAGCTCAAACCCATCAAAACCCGGGTAGCTATTAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

354

Amino Acids

39.1

Weight (kDa)

5.22

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 259
AclWI GGATC 1 cut(s) 120
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 2 cut(s) 715, 1056
AcuI CTGAAG 2 cut(s) 264, 550
AfaI GTAC 2 cut(s) 441, 465
AfiI CCNNNNNNNGG 3 cut(s) 53, 259, 703
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 4 cut(s) 352, 505, 674, 712
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 7 cut(s) 266, 380, 577, 620, 807, 1024, 1049
AluI AGCT 7 cut(s) 266, 380, 577, 620, 807, 1024, 1049
Alw21I GWGCWC 2 cut(s) 814, 858
Alw26I GTCTC 3 cut(s) 28, 97, 453
AlwI GGATC 1 cut(s) 120
AlwNI CAGNNNCTG 2 cut(s) 95, 200
Ama87I CYCGRG 1 cut(s) 1041
AoxI GGCC 2 cut(s) 178, 250
ApeKI GCWGC 4 cut(s) 200, 211, 556, 596
ApoI RAATTY 2 cut(s) 715, 1056
ArsI GACNNNNNNTTYG 2 cut(s) 75, 107
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 988
AsuC2I CCSGG 3 cut(s) 249, 1042, 1043
AsuHPI GGTGA 2 cut(s) 82, 758
AsuII TTCGAA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 1041
AxyI CCTNAGG 1 cut(s) 893
BauI CACGAG 1 cut(s) 443
Bbv12I GWGCWC 2 cut(s) 814, 858
BbvI GCAGC 4 cut(s) 187, 198, 568, 583
BccI CCATC 2 cut(s) 973, 1040
BcgI CGANNNNNNTGC 2 cut(s) 643, 677
BciT130I CCWGG 1 cut(s) 320
BcnI CCSGG 3 cut(s) 249, 1042, 1043
BcoDI GTCTC 3 cut(s) 28, 97, 453
BfaI CTAG 1 cut(s) 1013
BfmI CTRYAG 3 cut(s) 554, 597, 910
BfoI RGCGCY 1 cut(s) 989
BisI GCNGC 4 cut(s) 201, 212, 557, 597
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 4 cut(s) 202, 213, 558, 598
BmcAI AGTACT 1 cut(s) 441
Bme1390I CCNGG 4 cut(s) 249, 320, 1042, 1043
BmeT110I CYCGRG 1 cut(s) 1041
BmrFI CCNGG 4 cut(s) 249, 320, 1042, 1043
BmsI GCATC 2 cut(s) 187, 232
BoxI GACNNNNGTC 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 578
Bpu1102I GCTNAGC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 653
BpuMI CCSGG 3 cut(s) 249, 1042, 1043
BsaJI CCNNGG 2 cut(s) 175, 1041
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 255, 285, 566, 596
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 259, 703
Bse1I ACTGG 2 cut(s) 639, 846
Bse21I CCTNAGG 1 cut(s) 893
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 175, 1041
BseGI GGATG 2 cut(s) 310, 643
BseLI CCNNNNNNNGG 3 cut(s) 53, 259, 703
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 4 cut(s) 33, 207, 907, 996
BseNI ACTGG 2 cut(s) 639, 846
BseRI GAGGAG 2 cut(s) 173, 587
BseXI GCAGC 4 cut(s) 187, 198, 568, 583
BshFI GGCC 2 cut(s) 180, 252
BsiHKAI GWGCWC 2 cut(s) 814, 858
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 3 cut(s) 249, 989, 1042
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 53, 259, 703
BsmAI GTCTC 3 cut(s) 28, 97, 453
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 2 cut(s) 551, 790
BsnI GGCC 2 cut(s) 180, 252
BsoBI CYCGRG 1 cut(s) 1041
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 814, 858
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 296
BspANI GGCC 2 cut(s) 180, 252
BspCNI CTCAG 4 cut(s) 32, 206, 906, 997
BspMAI CTGCAG 2 cut(s) 558, 601
BspPI GGATC 1 cut(s) 120
BspQI GCTCTTC 1 cut(s) 846
BspT104I TTCGAA 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 2 cut(s) 639, 846
BssECI CCNNGG 2 cut(s) 175, 1041
BssMI GATC 1 cut(s) 112
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 752
Bst6I CTCTTC 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 126, 622
BstDEI CTNAG 6 cut(s) 19, 193, 296, 578, 893, 1005
BstENI CCTNNNNNAGG 2 cut(s) 51, 701
BstF5I GGATG 2 cut(s) 310, 643
BstH2I RGCGCY 1 cut(s) 989
BstHHI GCGC 1 cut(s) 988
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 3 cut(s) 28, 97, 453
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 3 cut(s) 166, 596, 834
BstPAI GACNNNNGTC 1 cut(s) 753
BstSCI CCNGG 4 cut(s) 247, 318, 1040, 1041
BstSFI CTRYAG 3 cut(s) 554, 597, 910
BstV1I GCAGC 4 cut(s) 187, 198, 568, 583
Bsu36I CCTNAGG 1 cut(s) 893
BsuRI GGCC 2 cut(s) 180, 252
BtsCI GGATG 2 cut(s) 310, 643
BtsI GCAGTG 1 cut(s) 728
BtsIMutI CAGTG 3 cut(s) 574, 728, 839
Cac8I GCNNGC 2 cut(s) 126, 622
CaiI CAGNNNCTG 2 cut(s) 95, 200
CfoI GCGC 1 cut(s) 988
Cfr9I CCCGGG 1 cut(s) 1041
CsiI ACCWGGT 1 cut(s) 318
Csp6I GTAC 2 cut(s) 440, 464
CviQI GTAC 2 cut(s) 440, 464
DdeI CTNAG 6 cut(s) 19, 193, 296, 578, 893, 1005
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 180
Eco57I CTGAAG 2 cut(s) 264, 550
Eco81I CCTNAGG 1 cut(s) 893
Eco88I CYCGRG 1 cut(s) 1041
EcoNI CCTNNNNNAGG 2 cut(s) 51, 701
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 983
ErhI CCWWGG 1 cut(s) 175
FaqI GGGAC 1 cut(s) 272
Fnu4HI GCNGC 4 cut(s) 201, 212, 557, 597
FokI GGATG 2 cut(s) 317, 650
Fsp4HI GCNGC 4 cut(s) 201, 212, 557, 597
FspBI CTAG 1 cut(s) 1013
GlaI GCGC 1 cut(s) 987
GluI GCNGC 4 cut(s) 201, 212, 557, 597
HaeII RGCGCY 1 cut(s) 989
HaeIII GGCC 2 cut(s) 180, 252
HapII CCGG 3 cut(s) 249, 989, 1042
HhaI GCGC 1 cut(s) 988
Hin6I GCGC 1 cut(s) 986
HinP1I GCGC 1 cut(s) 986
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 8 cut(s) 8, 17, 602, 666, 770, 947, 1009, 1017
HpaII CCGG 3 cut(s) 249, 989, 1042
HphI GGTGA 2 cut(s) 82, 758
Hpy166II GTNNAC 2 cut(s) 73, 474
Hpy188I TCNGA 4 cut(s) 196, 283, 607, 879
Hpy188III TCNNGA 1 cut(s) 1004
Hpy8I GTNNAC 2 cut(s) 73, 474
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 6 cut(s) 52, 477, 535, 560, 621, 680
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 9 cut(s) 228, 245, 314, 407, 459, 556, 599, 721, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 6 cut(s) 19, 193, 296, 578, 893, 1005
HpySE526I ACGT 1 cut(s) 147
HspAI GCGC 1 cut(s) 986
Kzo9I GATC 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 2 cut(s) 263, 574
Lsp1109I GCAGC 4 cut(s) 187, 198, 568, 583
LweI GCATC 2 cut(s) 187, 232
MabI ACCWGGT 1 cut(s) 318
MaeI CTAG 1 cut(s) 1013
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 6 cut(s) 14, 373, 560, 630, 746, 844
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 5 cut(s) 270, 724, 813, 863, 880
MhlI GDGCHC 2 cut(s) 814, 858
MluCI AATT 4 cut(s) 157, 678, 715, 1056
MlyI GAGTC 3 cut(s) 11, 941, 1018
MnlI CCTC 9 cut(s) 47, 191, 194, 565, 681, 697, 814, 902, 943
Mph1103I ATGCAT 1 cut(s) 983
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 2 cut(s) 681, 1053
MslI CAYNNNNRTG 2 cut(s) 38, 240
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 249, 989, 1042
MspR9I CCNGG 4 cut(s) 249, 320, 1042, 1043
Mva1269I GAATGC 2 cut(s) 551, 790
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 3 cut(s) 249, 1042, 1043
NdeII GATC 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 14, 746
NsiI ATGCAT 1 cut(s) 983
NspI RCATGY 3 cut(s) 166, 596, 834
NspV TTCGAA 1 cut(s) 653
PceI AGGCCT 1 cut(s) 180
PciI ACATGT 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 846
PctI GAATGC 2 cut(s) 551, 790
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 5 cut(s) 8, 602, 666, 770, 1017
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 4 cut(s) 202, 213, 558, 598
PleI GAGTC 3 cut(s) 11, 941, 1017
PpsI GAGTC 3 cut(s) 11, 941, 1017
PscI ACATGT 1 cut(s) 162
PshAI GACNNNNGTC 1 cut(s) 753
PshBI ATTAAT 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PsrI GAACNNNNNNTAC 2 cut(s) 497, 529
PstI CTGCAG 2 cut(s) 558, 601
PstNI CAGNNNCTG 2 cut(s) 95, 200
PsyI GACNNNGTC 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 2 cut(s) 441, 465
RsaNI GTAC 2 cut(s) 440, 464
RseI CAYNNNNRTG 2 cut(s) 38, 240
SapI GCTCTTC 1 cut(s) 846
SaqAI TTAA 2 cut(s) 681, 1053
SatI GCNGC 4 cut(s) 201, 212, 557, 597
Sau3AI GATC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 441
SchI GAGTC 3 cut(s) 11, 941, 1018
ScrFI CCNGG 4 cut(s) 249, 320, 1042, 1043
SduI GDGCHC 2 cut(s) 814, 858
SexAI ACCWGGT 1 cut(s) 318
SfaNI GCATC 2 cut(s) 187, 232
SfcI CTRYAG 3 cut(s) 554, 597, 910
SfuI TTCGAA 1 cut(s) 653
SmaI CCCGGG 1 cut(s) 1043
SmiMI CAYNNNNRTG 2 cut(s) 38, 240
Sse9I AATT 4 cut(s) 157, 678, 715, 1056
SseBI AGGCCT 1 cut(s) 180
SspMI CTAG 1 cut(s) 1013
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 4 cut(s) 247, 318, 1040, 1041
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 752
TaiI ACGT 1 cut(s) 150
TaqI TCGA 4 cut(s) 11, 327, 653, 968
TasI AATT 4 cut(s) 157, 678, 715, 1056
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 5 cut(s) 8, 602, 666, 770, 1017
Tru1I TTAA 2 cut(s) 681, 1053
Tru9I TTAA 2 cut(s) 681, 1053
TscAI CASTG 3 cut(s) 574, 728, 846
TseFI GTSAC 2 cut(s) 14, 746
TseI GCWGC 4 cut(s) 200, 211, 556, 596
Tsp45I GTSAC 2 cut(s) 14, 746
TspDTI ATGAA 4 cut(s) 425, 654, 797, 809
TspMI CCCGGG 1 cut(s) 1041
TspRI CASTG 3 cut(s) 574, 728, 846
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 259
VspI ATTAAT 1 cut(s) 681
XagI CCTNNNNNAGG 2 cut(s) 51, 701
XapI RAATTY 2 cut(s) 715, 1056
XceI RCATGY 3 cut(s) 166, 596, 834
XmaI CCCGGG 1 cut(s) 1041
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 1013
ZrmI AGTACT 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.