Rh2CG156800

Pollen-specific protein SF21-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001208
Physical Location & Seq
Reverse (-)
13607117 .. 13608077
961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG156800.1

Sequence Viewer

Length: 663 bp
ATGGGAGTGACAGCGGGTGCTTATATCCTTTCCTTATTTGCTACGAAATATAGGAAACGCGTTCTTGGTTTGATACTTGTATCTCCATTATGCAGAGCACCATCTTGGACCGAATGGTTTTATAATAAGGTGATATCGAATATGCTATATTTCTATGGGATGTGTGGTTTGCTAAAGGAGCGTTTGCTTCAGCGTTACTTTAGTAAGGAGGTTCGTGGTAGTGCTGAAGTTCCGGAGTCGGATATAGTTCAAGCATGCAGAAAGTTGTTGGAAGAGAGGCAGAGCTCAAATGTTTGGAGATTTCTTAAAGCAATTAATCGGAGACCTGACATAACTGAAGGCTTGAAGTCACTAAGGTGTCGCACTCTCATTTTTTCTGGGGATAGCTCTCCTTTCCACCGTGAGGCTCTCCACATGATCTCAAAGTTGGATGGAAGAAATAGTGCCTTAGTAGAGGTCCAGGCTTGTGGATCGATGGTGACAGAGGAGCAGCCACATGCAATGTTGATACCCATGGAGTACTTCTTCATGGGGTATGGTTTTTACAGACCGTGTCATTTCAGGGAGAGCCCTAGGAGCCCACTCATCCCAACTTGCATCTCCCCGGAAAGCATGGGTCTGAAGCTAAAACCAATCAAGACCCGTGTGTCGCTCGGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ndr

Protein Analysis

220

Amino Acids

25.2

Weight (kDa)

9.55

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndr PF03096 1 - 183 5e-65 Ndr family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 123, 661
AasI GACNNNNNNGTC 1 cut(s) 646
AccII CGCG 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 478
AcuI CTGAAG 4 cut(s) 173, 246, 357, 641
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 2 cut(s) 251, 346
AjnI CCWGG 1 cut(s) 459
AleI CACNNNNGTG 1 cut(s) 355
AluBI AGCT 3 cut(s) 285, 387, 625
AluI AGCT 3 cut(s) 285, 387, 625
Alw21I GWGCWC 2 cut(s) 100, 287
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 478
Aor13HI TCCGGA 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 490
AseI ATTAAT 1 cut(s) 315
AspA2I CCTAGG 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 108, 457
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 2 cut(s) 142, 490
AvaII GGWCC 2 cut(s) 108, 457
AvrII CCTAGG 1 cut(s) 572
BanII GRGCYC 3 cut(s) 287, 572, 581
Bbv12I GWGCWC 2 cut(s) 100, 287
BbvI GCAGC 1 cut(s) 502
BccI CCATC 3 cut(s) 109, 425, 469
BciT130I CCWGG 1 cut(s) 461
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 1 cut(s) 573
BisI GCNGC 1 cut(s) 491
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 1 cut(s) 492
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 2 cut(s) 461, 605
Bme18I GGWCC 2 cut(s) 108, 457
BmgT120I GGNCC 2 cut(s) 108, 457
BmiI GGNNCC 1 cut(s) 578
BmrFI CCNGG 2 cut(s) 461, 605
BmsI GCATC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 605
Bsa29I ATCGAT 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 3 cut(s) 513, 572, 603
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 473
BseDI CCNNGG 3 cut(s) 513, 572, 603
BseGI GGATG 3 cut(s) 165, 436, 585
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 60
BshVI ATCGAT 1 cut(s) 473
BsiHKAI GWGCWC 2 cut(s) 100, 287
BsiSI CCGG 2 cut(s) 233, 605
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 4 cut(s) 100, 287, 572, 581
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 2 cut(s) 417, 470
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 1 cut(s) 14
BspDI ATCGAT 1 cut(s) 473
BspEI TCCGGA 1 cut(s) 232
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 578
BspPI GGATC 1 cut(s) 478
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 507
BssECI CCNNGG 3 cut(s) 513, 572, 603
BssMI GATC 2 cut(s) 417, 470
BssT1I CCWWGG 2 cut(s) 513, 572
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 401, 552
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 353, 448
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 3 cut(s) 165, 436, 585
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 2 cut(s) 420, 473
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 2 cut(s) 417, 470
BstMWI GCNNNNNNNGC 2 cut(s) 178, 576
BstNI CCWGG 1 cut(s) 461
BstNSI RCATGY 2 cut(s) 258, 500
BstSCI CCNGG 2 cut(s) 459, 603
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 502
BstXI CCANNNNNNTGG 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 473
BsuTUI ATCGAT 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 3 cut(s) 165, 436, 585
Cac8I GCNNGC 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 108, 457
ClaI ATCGAT 1 cut(s) 473
Csp6I GTAC 1 cut(s) 520
CviAII CATG 6 cut(s) 255, 415, 497, 514, 529, 613
CviJI RGCY 9 cut(s) 285, 342, 387, 407, 464, 493, 570, 579, 625
CviKI_1 RGCY 9 cut(s) 285, 342, 387, 407, 464, 493, 570, 579, 625
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 2 cut(s) 353, 448
DpnI GATC 2 cut(s) 419, 472
DpnII GATC 2 cut(s) 417, 470
DrdI GACNNNNNNGTC 1 cut(s) 646
DseDI GACNNNNNNGTC 1 cut(s) 646
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 285
Eco130I CCWWGG 2 cut(s) 513, 572
Eco24I GRGCYC 3 cut(s) 287, 572, 581
Eco31I GGTCTC 1 cut(s) 316
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 108, 457
Eco53kI GAGCTC 1 cut(s) 285
Eco57I CTGAAG 4 cut(s) 173, 246, 357, 641
EcoICRI GAGCTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 459
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 513, 572
EcoT38I GRGCYC 3 cut(s) 287, 572, 581
ErhI CCWWGG 2 cut(s) 513, 572
FaeI CATG 6 cut(s) 258, 418, 500, 517, 532, 616
FatI CATG 6 cut(s) 254, 414, 496, 513, 528, 612
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 491
FokI GGATG 3 cut(s) 172, 443, 572
FriOI GRGCYC 3 cut(s) 287, 572, 581
Fsp4HI GCNGC 1 cut(s) 491
FspBI CTAG 1 cut(s) 573
GluI GCNGC 1 cut(s) 491
HapII CCGG 2 cut(s) 233, 605
Hin1II CATG 6 cut(s) 258, 418, 500, 517, 532, 616
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 233, 605
HphI GGTGA 2 cut(s) 142, 490
Hpy188I TCNGA 4 cut(s) 241, 321, 621, 656
Hpy188III TCNNGA 2 cut(s) 233, 637
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 401, 552
HpyCH4V TGCA 4 cut(s) 93, 258, 500, 597
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 576
HpyF3I CTNAG 2 cut(s) 353, 448
Hsp92II CATG 6 cut(s) 258, 418, 500, 517, 532, 616
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 417, 470
LmnI GCTCC 3 cut(s) 178, 487, 576
LpnPI CCDG 7 cut(s) 246, 339, 363, 446, 473, 547, 618
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 1 cut(s) 606
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 4 cut(s) 7, 194, 348, 478
MalI GATC 2 cut(s) 419, 472
MboI GATC 2 cut(s) 417, 470
MboII GAAGA 3 cut(s) 284, 447, 517
MhlI GDGCHC 4 cut(s) 100, 287, 572, 581
MluCI AATT 1 cut(s) 312
MluI ACGCGT 1 cut(s) 58
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 3 cut(s) 219, 249, 408
MnlI CCTC 5 cut(s) 202, 270, 397, 448, 478
MroI TCCGGA 1 cut(s) 232
MseI TTAA 2 cut(s) 306, 315
MslI CAYNNNNRTG 1 cut(s) 355
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 233, 605
MspR9I CCNGG 2 cut(s) 461, 605
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 178, 576
NciI CCSGG 1 cut(s) 605
NcoI CCATGG 1 cut(s) 513
NdeII GATC 2 cut(s) 417, 470
NlaIII CATG 6 cut(s) 258, 418, 500, 517, 532, 616
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 3 cut(s) 7, 348, 478
NspI RCATGY 2 cut(s) 258, 500
OliI CACNNNNGTG 1 cut(s) 355
PaeI GCATGC 1 cut(s) 258
PflFI GACNNNGTC 1 cut(s) 552
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 315
PsiI TTATAA 2 cut(s) 123, 661
Psp124BI GAGCTC 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 578
PspPI GGNCC 2 cut(s) 108, 457
PsyI GACNNNGTC 1 cut(s) 552
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 355
SacI GAGCTC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 306, 315
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 2 cut(s) 417, 470
Sau96I GGNCC 2 cut(s) 108, 457
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 461, 605
SduI GDGCHC 4 cut(s) 100, 287, 572, 581
SetI ASST 8 cut(s) 132, 213, 287, 328, 359, 389, 459, 627
SfaNI GCATC 1 cut(s) 606
SinI GGWCC 2 cut(s) 108, 457
SmiMI CAYNNNNRTG 1 cut(s) 355
SphI GCATGC 1 cut(s) 258
Sse9I AATT 1 cut(s) 312
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 459, 603
StyI CCWWGG 2 cut(s) 513, 572
TaaI ACNGT 2 cut(s) 401, 552
TaqI TCGA 2 cut(s) 137, 473
TaqII GACCGA 1 cut(s) 125
TasI AATT 1 cut(s) 312
TatI WGTACW 1 cut(s) 519
Tru1I TTAA 2 cut(s) 306, 315
Tru9I TTAA 2 cut(s) 306, 315
TseFI GTSAC 3 cut(s) 7, 348, 478
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 3 cut(s) 7, 348, 478
TspDTI ATGAA 1 cut(s) 517
Tth111I GACNNNGTC 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 108, 457
VspI ATTAAT 1 cut(s) 315
XceI RCATGY 2 cut(s) 258, 500
XmaJI CCTAGG 1 cut(s) 572
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.